Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Reverse (-)

10702292 .. 10704408

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTGGAGGAAACGAGACAACCCACGGGGTCAAGTAGAGGGGCTAGATAGTCCCCCGAAGCCAAGTGGAAAATGGCCCTCTCCCAAGTTCGAGCAAGTTCCCTTGATCGTGTTGAGATGGGGTAGCAACCACCACCACGGGTTGAGGTTGAGGTCTTTGTTGAGGAGTTGTTGGAGGAGGTGGAGAGGTGGCAAAGTGACATCGGTGCGACGGCTCATTTGGGGGGAAATGATCCTTGGCGAAAACCGCACCTTCGACGCCGGTTTGGTGACTCGAGACGGTCGGAATAGCCGAAAATCGACGAAACTTCCAAATTGCTACAGTGAGCTTCATGGCTCAAATCCGAGCTCCTCCGGCCGATTCATCGAAAAACACCACCGCAGGTGTGACAAGGAGGAGGAGGCGAGCCTACGGTGCCGGATTTTGTCGTGGGGTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.95

Weight (kDa)

11.01

Isoelectric Point (pI)

72.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	372
AccB1I	GGYRCC	1 cut(s)	414
AciI	CCGC	2 cut(s)	247, 379
AclWI	GGATC	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	355
AcyI	GRCGYC	1 cut(s)	258
AjuI	GAANNNNNNNTTGG	2 cut(s)	219, 251
AluBI	AGCT	2 cut(s)	328, 348
AluI	AGCT	2 cut(s)	328, 348
Alw21I	GWGCWC	1 cut(s)	350
Alw26I	GTCTC	2 cut(s)	9, 270
AlwI	GGATC	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	2 cut(s)	74, 355
ArsI	GACNNNNNNTTYG	2 cut(s)	201, 233
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	280
AvaI	CYCGRG	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	350
BccI	CCATC	1 cut(s)	111
BceAI	ACGGC	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	9, 270
BfaI	CTAG	2 cut(s)	44, 439
BfmI	CTRYAG	1 cut(s)	319
BfuAI	ACCTGC	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	3 cut(s)	23, 136, 235
Bse118I	RCCGGY	1 cut(s)	260
BseDI	CCNNGG	3 cut(s)	23, 136, 235
BseRI	GAGGAG	5 cut(s)	178, 190, 340, 410, 413
BseX3I	CGGCCG	1 cut(s)	355
Bsh1285I	CGRYCG	2 cut(s)	283, 358
BshFI	GGCC	2 cut(s)	76, 357
BshNI	GGYRCC	1 cut(s)	414
BsiEI	CGRYCG	2 cut(s)	283, 358
BsiHKAI	GWGCWC	1 cut(s)	350
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	3 cut(s)	261, 354, 418
BslFI	GGGAC	1 cut(s)	36
BsmAI	GTCTC	2 cut(s)	9, 270
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	2 cut(s)	76, 357
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	350
Bsp143I	GATC	2 cut(s)	105, 231
BspACI	CCGC	2 cut(s)	247, 379
BspANI	GGCC	2 cut(s)	76, 357
BspLI	GGNNCC	1 cut(s)	416
BspMI	ACCTGC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	3 cut(s)	23, 136, 235
BssMI	GATC	2 cut(s)	105, 231
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	235
Bst4CI	ACNGT	3 cut(s)	281, 323, 414
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	406
BstDSI	CCRYGG	2 cut(s)	23, 136
BstKTI	GATC	2 cut(s)	108, 234
BstMAI	GTCTC	2 cut(s)	9, 270
BstMBI	GATC	2 cut(s)	105, 231
BstMCI	CGRYCG	2 cut(s)	283, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 354, 414
BstSFI	CTRYAG	1 cut(s)	319
BstZI	CGGCCG	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	76, 357
BtgI	CCRYGG	2 cut(s)	23, 136
BtsIMutI	CAGTG	1 cut(s)	328
BveI	ACCTGC	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	406
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	75
CseI	GACGC	1 cut(s)	266
CviAII	CATG	1 cut(s)	332
DpnI	GATC	2 cut(s)	107, 233
DpnII	GATC	2 cut(s)	105, 231
EaeI	YGGCCR	1 cut(s)	355
EagI	CGGCCG	1 cut(s)	355
Ecl136II	GAGCTC	1 cut(s)	348
EclXI	CGGCCG	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	350
Eco52I	CGGCCG	1 cut(s)	355
Eco53kI	GAGCTC	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	235
EcoT38I	GRGCYC	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	235
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	1 cut(s)	335
FaiI	YATR	1 cut(s)	333
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	1 cut(s)	331
FriOI	GRGCYC	1 cut(s)	350
FspBI	CTAG	2 cut(s)	44, 439
HaeIII	GGCC	2 cut(s)	76, 357
HapII	CCGG	3 cut(s)	261, 354, 418
HgaI	GACGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	335
HinfI	GANTC	2 cut(s)	271, 360
HpaII	CCGG	3 cut(s)	261, 354, 418
HphI	GGTGA	1 cut(s)	280
Hpy188I	TCNGA	2 cut(s)	285, 345
Hpy188III	TCNNGA	1 cut(s)	275
Hpy99I	CGWCG	3 cut(s)	213, 260, 304
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	3 cut(s)	281, 323, 414
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 354, 414
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	335
Kzo9I	GATC	2 cut(s)	105, 231
LmnI	GCTCC	1 cut(s)	353
LpnPI	CCDG	4 cut(s)	274, 367, 367, 431
MaeI	CTAG	2 cut(s)	44, 439
MaeIII	GTNAC	3 cut(s)	196, 268, 386
MalI	GATC	2 cut(s)	107, 233
MboI	GATC	2 cut(s)	105, 231
MhlI	GDGCHC	1 cut(s)	350
MluCI	AATT	1 cut(s)	313
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	2 cut(s)	152, 263
MspI	CCGG	3 cut(s)	261, 354, 418
MwoI	GCNNNNNNNGC	3 cut(s)	246, 354, 414
NdeII	GATC	2 cut(s)	105, 231
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	1 cut(s)	416
NmuCI	GTSAC	3 cut(s)	196, 268, 386
PaeR7I	CTCGAG	1 cut(s)	273
PaqCI	CACCTGC	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	360
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Psp124BI	GAGCTC	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	416
PspPI	GGNCC	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	350
Sau3AI	GATC	2 cut(s)	105, 231
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	350
SetI	ASST	8 cut(s)	149, 155, 182, 190, 254, 330, 350, 386
SfcI	CTRYAG	1 cut(s)	319
Sfr274I	CTCGAG	1 cut(s)	273
SlaI	CTCGAG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	1 cut(s)	313
SsiI	CCGC	2 cut(s)	247, 379
SspMI	CTAG	2 cut(s)	44, 439
SstI	GAGCTC	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	3 cut(s)	281, 323, 414
TaqI	TCGA	5 cut(s)	90, 255, 274, 299, 366
TasI	AATT	1 cut(s)	313
TfiI	GAWTC	1 cut(s)	360
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	3 cut(s)	196, 268, 386
Tsp45I	GTSAC	3 cut(s)	196, 268, 386
TspDTI	ATGAA	2 cut(s)	320, 352
TspRI	CASTG	1 cut(s)	328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	69
XhoI	CTCGAG	1 cut(s)	273
XspI	CTAG	2 cut(s)	44, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.