Rroxscaffold_6G00423860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002742
Physical Location & Seq
Forward (+)
45097805 .. 45100471
2667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423860.1

Sequence Viewer

Length: 291 bp
ATGCGAGATAGTCCCCCGAGTCTAAGTAGAGCAGGGAAGACAATCCCCCATAGTTCAAGTGGAGGGAGGGCCCTTTCTCTAGCTCCGATCAAGCTTCCCATGATGGTACCGAGATGGGGCAGCAATTGTCACCGAGGGTCGAGGTTGAGGTCTTTGTTGAGGAATTGTTGGACTAGGCTGGAGAGGAGGCAAAGTAATGCCGCCGCGAGGGTTCGTTTGGTGGAAGATGTTATGCTGGATGATACGCCTTTATTAAGCGCACAAAATTACCCCGCAAAAGACAATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.7

Weight (kDa)

11.06

Isoelectric Point (pI)

63.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 106
AccB1I GGYRCC 1 cut(s) 106
AccII CGCG 1 cut(s) 206
AciI CCGC 3 cut(s) 201, 204, 273
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 2 cut(s) 116, 207
AgsI TTSAA 1 cut(s) 57
AluBI AGCT 2 cut(s) 83, 94
AluI AGCT 2 cut(s) 83, 94
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 1 cut(s) 69
ApaI GGGCCC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 106
AspLEI GCGC 1 cut(s) 260
AspS9I GGNCC 2 cut(s) 69, 70
AsuHPI GGTGA 1 cut(s) 122
AvaI CYCGRG 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 106
BanII GRGCYC 1 cut(s) 73
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 132
BccI CCATC 2 cut(s) 97, 108
BfaI CTAG 2 cut(s) 80, 174
BisI GCNGC 3 cut(s) 121, 201, 204
BlsI GCNGC 3 cut(s) 122, 202, 205
BmeT110I CYCGRG 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 69, 70
BmiI GGNNCC 2 cut(s) 71, 108
BpiI GAAGAC 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 207
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 2 cut(s) 116, 207
BseRI GAGGAG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 16
BslI CCNNNNNNNGG 2 cut(s) 116, 207
BsnI GGCC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 16
Bsp120I GGGCCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 3 cut(s) 201, 204, 273
BspANI GGCC 1 cut(s) 71
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 71, 108
BspT107I GGYRCC 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 73
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 132
BstV2I GAAGAC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 244
CfoI GCGC 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 69, 70
Csp6I GTAC 1 cut(s) 107
CviAII CATG 1 cut(s) 100
CviJI RGCY 4 cut(s) 71, 83, 94, 178
CviKI_1 RGCY 4 cut(s) 71, 83, 94, 178
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 73
Eco88I CYCGRG 1 cut(s) 16
EcoO109I RGGNCCY 2 cut(s) 69, 70
EcoT38I GRGCYC 1 cut(s) 73
FaeI CATG 1 cut(s) 103
FaiI YATR 3 cut(s) 51, 101, 233
FatI CATG 1 cut(s) 99
FauI CCCGC 1 cut(s) 280
Fnu4HI GCNGC 3 cut(s) 121, 201, 204
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 3 cut(s) 121, 201, 204
FspBI CTAG 2 cut(s) 80, 174
GlaI GCGC 1 cut(s) 259
GluI GCNGC 3 cut(s) 121, 201, 204
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 1 cut(s) 71
HhaI GCGC 1 cut(s) 260
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 1 cut(s) 19
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 87
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 1 cut(s) 258
KpnI GGTACC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 3 cut(s) 18, 164, 221
Lsp1109I GCAGC 1 cut(s) 132
MaeI CTAG 2 cut(s) 80, 174
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 2 cut(s) 49, 236
MfeI CAATTG 2 cut(s) 124, 283
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 4 cut(s) 124, 163, 265, 283
MlyI GAGTC 1 cut(s) 28
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 9 cut(s) 56, 60, 128, 135, 141, 153, 177, 180, 201
MseI TTAA 1 cut(s) 254
MunI CAATTG 2 cut(s) 124, 283
MvnI CGCG 1 cut(s) 206
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 2 cut(s) 71, 108
NmuCI GTSAC 1 cut(s) 128
PkrI GCNGC 3 cut(s) 122, 202, 205
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 71, 108
PspOMI GGGCCC 1 cut(s) 69
PspPI GGNCC 2 cut(s) 69, 70
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 3 cut(s) 121, 201, 204
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 2 cut(s) 69, 70
SchI GAGTC 1 cut(s) 28
SduI GDGCHC 1 cut(s) 73
SetI ASST 4 cut(s) 85, 96, 146, 152
Sse9I AATT 4 cut(s) 124, 163, 265, 283
SsiI CCGC 3 cut(s) 201, 204, 273
SspMI CTAG 2 cut(s) 80, 174
TaqI TCGA 1 cut(s) 140
TasI AATT 4 cut(s) 124, 163, 265, 283
TauI GCSGC 2 cut(s) 203, 206
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 1 cut(s) 120
Tsp45I GTSAC 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
XspI CTAG 2 cut(s) 80, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.