Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Forward (+)

276487 .. 278936

Gene Structure 2450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G002100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGGGTTATCAAATGTGCCTTTTTGGCTTACTTCATTACGAATGTCACAAGTTCACAAAGCTCATTCTGCAGACGTTTGTGTAAAGGGGTTTGTGAAATTGTGAGGCACTCAGTCAAATTAAAGCATAAAGCCGCCGTCAAAGAGAAAAAGCGAGTGCCTAAGAAGTCCACGCTCAAAAAATCCGAAGCTTTATCTCATCAAGAGCTCAAGTCTTGGTCCCAAGGCCTCCCCGTCGTCTCCAATCGAATTCCGTACACCCAGCTCTTGATATTGAACCAGGAAGGTAAGCTCAAACATGTTATCAAGCCTCCTGGTGTTGAATTGCAAAAAAAGGTAGAGCCCGTGGTGGTGCTGCTCTTGTTGGGCTTGGGAGGGCTAACTGAAAAGTCAGATTTGCCCCTCACGAATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

139

Amino Acids

15.34

Weight (kDa)

9.99

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	249
AfaI	GTAC	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	2 cut(s)	277, 323
AjnI	CCWGG	2 cut(s)	279, 313
AluBI	AGCT	5 cut(s)	63, 191, 208, 265, 292
AluI	AGCT	5 cut(s)	63, 191, 208, 265, 292
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	244
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	355
ApoI	RAATTY	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	219
BanII	GRGCYC	2 cut(s)	210, 345
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	342
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	2 cut(s)	281, 315
BcoDI	GTCTC	1 cut(s)	244
BfmI	CTRYAG	1 cut(s)	70
BglI	GCCNNNNNGGC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	135, 356
BlsI	GCNGC	2 cut(s)	136, 357
Bme1390I	CCNGG	2 cut(s)	281, 315
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	2 cut(s)	281, 315
BpuEI	CTTGAG	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	223, 345
BseBI	CCWGG	2 cut(s)	281, 315
BseDI	CCNNGG	2 cut(s)	223, 345
BseMII	CTCAG	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	342
BseYI	CCCAGC	1 cut(s)	261
BshFI	GGCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	244
BsmBI	CGTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	210, 345
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	221
BspMAI	CTGCAG	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	223, 345
BssT1I	CCWWGG	1 cut(s)	223
Bst2UI	CCWGG	2 cut(s)	281, 315
BstDEI	CTNAG	2 cut(s)	112, 162
BstDSI	CCRYGG	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 69
BstNI	CCWGG	2 cut(s)	281, 315
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	279, 313
BstSFI	CTRYAG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	1 cut(s)	299
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	112, 162
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	223
Eco147I	AGGCCT	1 cut(s)	228
Eco24I	GRGCYC	2 cut(s)	210, 345
Eco47I	GGWCC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	279, 313
EcoT14I	CCWWGG	1 cut(s)	223
EcoT38I	GRGCYC	2 cut(s)	210, 345
ErhI	CCWWGG	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	244
FaeI	CATG	1 cut(s)	302
FaiI	YATR	3 cut(s)	129, 300, 415
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	135, 356
FriOI	GRGCYC	2 cut(s)	210, 345
Fsp4HI	GCNGC	2 cut(s)	135, 356
GluI	GCNGC	2 cut(s)	135, 356
GsaI	CCCAGC	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	302
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	1 cut(s)	409
Hpy166II	GTNNAC	3 cut(s)	56, 171, 258
Hpy188I	TCNGA	2 cut(s)	187, 394
Hpy188III	TCNNGA	3 cut(s)	203, 268, 406
Hpy8I	GTNNAC	3 cut(s)	56, 171, 258
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	2 cut(s)	72, 328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 69
HpyF3I	CTNAG	2 cut(s)	112, 162
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	1 cut(s)	302
LpnPI	CCDG	5 cut(s)	266, 275, 293, 300, 327
Lsp1109I	GCAGC	1 cut(s)	342
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	1 cut(s)	46
MhlI	GDGCHC	2 cut(s)	210, 345
MluCI	AATT	4 cut(s)	99, 119, 249, 323
MnlI	CCTC	5 cut(s)	99, 239, 321, 368, 413
MseI	TTAA	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	281, 315
MvaI	CCWGG	2 cut(s)	281, 315
MwoI	GCNNNNNNNGC	2 cut(s)	26, 69
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	228
PciI	ACATGT	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	409
PkrI	GCNGC	2 cut(s)	136, 357
PscI	ACATGT	1 cut(s)	298
Psp124BI	GAGCTC	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	279, 313
PspFI	CCCAGC	1 cut(s)	261
PspGI	CCWGG	2 cut(s)	279, 313
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	219
PstI	CTGCAG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SacI	GAGCTC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	2 cut(s)	135, 356
Sau96I	GGNCC	1 cut(s)	219
ScrFI	CCNGG	2 cut(s)	281, 315
SduI	GDGCHC	2 cut(s)	210, 345
SetI	ASST	8 cut(s)	65, 79, 193, 210, 267, 289, 294, 339
SfcI	CTRYAG	1 cut(s)	70
SinI	GGWCC	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	4 cut(s)	99, 119, 249, 323
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	1 cut(s)	135
SstI	GAGCTC	1 cut(s)	210
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	279, 313
StyI	CCWWGG	1 cut(s)	223
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	247
TasI	AATT	4 cut(s)	99, 119, 249, 323
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	249
XceI	RCATGY	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.