Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Forward (+)

34790997 .. 34796748

Gene Structure 5752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGATCTATGTCAAAAACCGAACCTTCGACGCCGGTTTGGTGGCCCGGAGACGGCGGAATCGCTCGAAATCGGCAAAACCCGCAAGTTGCTACAGTAACCTTCCCAAGAAGAAATCGAGCTCCTCCGGCCAAATCTCCCCAAAATACCACCACAGATGCGTCAAGGGGGAGGAGATGAGCTTGGGGATGGCCGGATTTCGCCGTGGGTCGGCCGGAGGAGGAGAAATCGGAGGAAGAACCGGGCCGAAGAGGAAGGAAATGTCGGGGGAGAAGAGAGAGGGAGAGTTACCGGGTTTCTTGGCCTCAACCACCGTTTCACTTGGTAACGGGTTTCGGTTTCGATGCCTCAACCATCGCTTCGGTGTCGTCAACATAAGCTTCTTTGAGGACTCCAAAATTGGAGAATTTTGGTTTGAGACCTTAGAGACCGTCGTCGTTACCGACACTTTAGAGTCCCGATTTTGGGTACTCTTTCAAGGGCCTCCATTAGAGATTGTTGTGGAGTTGCTCGGTTTAGAGGGCAGCAATTCGGGTACTCTTTCGGCACCTCCGTCAAAGTTACCGGAGTTGCTCGATTTCGCCCTTTTGGGGTGCCTTCTTTGTGCAGCCTTCGACGGCACCTCGGTCGAGGGATTTCGGAGATGGAGAAAGAGAGAGAGAAACCGGAGAAGTGGGATTTCGGATTTAGGAAGAAGATGTGGAGGGATTTCGAGAGATGGAGAAAGAGAGAAAGGAACCGAGAGATGGAGAACGATTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

28.16

Weight (kDa)

10.06

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	544, 591, 617
AciI	CCGC	2 cut(s)	55, 81
AcoI	YGGCCR	3 cut(s)	127, 189, 210
AcsI	RAATTY	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	2 cut(s)	468, 535
AfiI	CCNNNNNNNGG	6 cut(s)	51, 208, 462, 463, 588, 744
AgsI	TTSAA	1 cut(s)	476
AluBI	AGCT	3 cut(s)	120, 180, 378
AluI	AGCT	3 cut(s)	120, 180, 378
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	3 cut(s)	43, 410, 419
AoxI	GGCC	7 cut(s)	42, 127, 189, 210, 242, 300, 479
ApeKI	GCWGC	2 cut(s)	522, 605
ApoI	RAATTY	1 cut(s)	404
AspS9I	GGNCC	3 cut(s)	43, 242, 479
AsuC2I	CCSGG	3 cut(s)	46, 241, 291
BanI	GGYRCC	3 cut(s)	544, 591, 617
BanII	GRGCYC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	534, 617
BccI	CCATC	5 cut(s)	181, 360, 636, 710, 738
BceAI	ACGGC	3 cut(s)	68, 186, 631
BcgI	CGANNNNNNTGC	2 cut(s)	607, 641
BcnI	CCSGG	3 cut(s)	46, 241, 291
BcoDI	GTCTC	3 cut(s)	43, 410, 419
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	2 cut(s)	523, 606
BlsI	GCNGC	2 cut(s)	524, 607
Bme1390I	CCNGG	3 cut(s)	46, 241, 291
BmgT120I	GGNCC	3 cut(s)	43, 242, 479
BmiI	GGNNCC	4 cut(s)	546, 593, 619, 736
BmrFI	CCNGG	3 cut(s)	46, 241, 291
BmsI	GCATC	2 cut(s)	146, 332
BoxI	GACNNNNGTC	1 cut(s)	431
BpuMI	CCSGG	3 cut(s)	46, 241, 291
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	2 cut(s)	410, 419
BsaJI	CCNNGG	2 cut(s)	202, 621
BsaWI	WCCGGW	2 cut(s)	562, 663
Bsc4I	CCNNNNNNNGG	6 cut(s)	51, 208, 462, 463, 588, 744
Bse118I	RCCGGY	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	202, 621
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	6 cut(s)	51, 208, 462, 463, 588, 744
BseRI	GAGGAG	4 cut(s)	112, 185, 231, 234
BseX3I	CGGCCG	1 cut(s)	210
BseXI	GCAGC	2 cut(s)	534, 617
BsgI	GTGCAG	1 cut(s)	624
Bsh1285I	CGRYCG	2 cut(s)	213, 627
BshFI	GGCC	7 cut(s)	44, 129, 191, 212, 244, 302, 481
BshNI	GGYRCC	3 cut(s)	544, 591, 617
BsiEI	CGRYCG	2 cut(s)	213, 627
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	9 cut(s)	33, 46, 126, 192, 213, 240, 290, 563, 664
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	6 cut(s)	51, 208, 462, 463, 588, 744
BsmAI	GTCTC	3 cut(s)	43, 410, 419
BsmBI	CGTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	7 cut(s)	44, 129, 191, 212, 244, 302, 481
Bso31I	GGTCTC	2 cut(s)	410, 419
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	2 cut(s)	55, 81
BspANI	GGCC	7 cut(s)	44, 129, 191, 212, 244, 302, 481
BspLI	GGNNCC	4 cut(s)	546, 593, 619, 736
BspT107I	GGYRCC	3 cut(s)	544, 591, 617
BspTNI	GGTCTC	2 cut(s)	410, 419
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	202, 621
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	30
Bst4CI	ACNGT	3 cut(s)	95, 313, 430
Bst6I	CTCTTC	2 cut(s)	242, 266
BstACI	GRCGYC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	421
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	3 cut(s)	43, 410, 419
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	2 cut(s)	213, 627
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 126
BstPAI	GACNNNNGTC	1 cut(s)	431
BstSCI	CCNGG	3 cut(s)	44, 239, 289
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	2 cut(s)	534, 617
BstZI	CGGCCG	1 cut(s)	210
BsuRI	GGCC	7 cut(s)	44, 129, 191, 212, 244, 302, 481
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	3 cut(s)	43, 242, 479
CseI	GACGC	2 cut(s)	38, 148
Csp6I	GTAC	2 cut(s)	467, 534
CviQI	GTAC	2 cut(s)	467, 534
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	3 cut(s)	127, 189, 210
EagI	CGGCCG	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	242, 266
EarI	CTCTTC	2 cut(s)	242, 266
EciI	GGCGGA	1 cut(s)	70
Ecl136II	GAGCTC	1 cut(s)	120
EclXI	CGGCCG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	122
Eco31I	GGTCTC	2 cut(s)	410, 419
Eco52I	CGGCCG	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	122
Esp3I	CGTCTC	1 cut(s)	43
FaiI	YATR	2 cut(s)	9, 374
FaqI	GGGAC	1 cut(s)	439
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	523, 606
FokI	GGATG	1 cut(s)	199
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	523, 606
GluI	GCNGC	2 cut(s)	523, 606
HaeIII	GGCC	7 cut(s)	44, 129, 191, 212, 244, 302, 481
HapII	CCGG	9 cut(s)	33, 46, 126, 192, 213, 240, 290, 563, 664
HgaI	GACGC	2 cut(s)	38, 148
Hin1I	GRCGYC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	376
HinfI	GANTC	3 cut(s)	58, 389, 452
HpaII	CCGG	9 cut(s)	33, 46, 126, 192, 213, 240, 290, 563, 664
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	3 cut(s)	230, 639, 682
Hpy188III	TCNNGA	2 cut(s)	456, 711
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	4 cut(s)	32, 434, 437, 617
HpyAV	CCTTC	5 cut(s)	34, 110, 247, 605, 619
HpyCH4III	ACNGT	3 cut(s)	95, 313, 430
HpyCH4V	TGCA	1 cut(s)	605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 126
HpyF3I	CTNAG	1 cut(s)	421
Hsp92I	GRCGYC	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	9 cut(s)	46, 59, 139, 205, 226, 253, 303, 576, 677
Lsp1109I	GCAGC	2 cut(s)	534, 617
LweI	GCATC	2 cut(s)	146, 332
MaeIII	GTNAC	5 cut(s)	95, 285, 323, 436, 558
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	6 cut(s)	121, 246, 259, 283, 702, 705
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	3 cut(s)	396, 404, 526
MlyI	GAGTC	2 cut(s)	383, 461
MseI	TTAA	1 cut(s)	756
MspI	CCGG	9 cut(s)	33, 46, 126, 192, 213, 240, 290, 563, 664
MspR9I	CCNGG	3 cut(s)	46, 241, 291
MwoI	GCNNNNNNNGC	2 cut(s)	80, 126
NciI	CCSGG	3 cut(s)	46, 241, 291
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	4 cut(s)	546, 593, 619, 736
PcsI	WCGNNNNNNNCGW	2 cut(s)	438, 548
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	524, 607
PleI	GAGTC	2 cut(s)	383, 460
PpsI	GAGTC	2 cut(s)	383, 460
PshAI	GACNNNNGTC	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	122
PspN4I	GGNNCC	4 cut(s)	546, 593, 619, 736
PspPI	GGNCC	3 cut(s)	43, 242, 479
RsaI	GTAC	2 cut(s)	468, 535
RsaNI	GTAC	2 cut(s)	467, 534
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	756
SatI	GCNGC	2 cut(s)	523, 606
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	3 cut(s)	43, 242, 479
SchI	GAGTC	2 cut(s)	383, 461
ScrFI	CCNGG	3 cut(s)	46, 241, 291
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	8 cut(s)	26, 102, 122, 182, 380, 422, 550, 623
SfaNI	GCATC	2 cut(s)	146, 332
SfcI	CTRYAG	1 cut(s)	91
Sse9I	AATT	3 cut(s)	396, 404, 526
SsiI	CCGC	2 cut(s)	55, 81
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	3 cut(s)	44, 239, 289
TaaI	ACNGT	3 cut(s)	95, 313, 430
TaqI	TCGA	8 cut(s)	27, 65, 116, 340, 573, 612, 627, 710
TaqII	GACCGA	1 cut(s)	613
TasI	AATT	3 cut(s)	396, 404, 526
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	756
Tru9I	TTAA	1 cut(s)	756
TseI	GCWGC	2 cut(s)	522, 605
TspGWI	ACGGA	1 cut(s)	540
XapI	RAATTY	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.