Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Forward (+)

38766799 .. 38767288

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018873

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGATCTTTGACGAAAACCCCACCTTCGACGCCGGTTTGGTGGCCGGAGACGGCCGGAATCGCAGGAAATCGACAAAACTCCAGTTCGGCTACAGTAACCTTCGCTGCTCAATTCCGAGCTCCTCCGATCGAGCCACCGCAAAACACCACCACAGGCATGACAAGGAGGAGGAGGCGAGCTTGTCCATGCCCGGATTCCATCGTGAGGTGGCCGGAAACGGAAGAATTTGCCGGTGGAAGGAAACGGCAGAAGGGGAAGGAAAATCGAGGAAGAGGAGAGAGAAAAGCCGTAACTTTAATCTTTCGCTCATAACTTTCGCATACGGACTCCGATTTTTACGTACCACATATGCACGAGCTCGGTTTAACGTCCTCTACAACTTTCATGAAGGACGTTTCCTCAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.82

Weight (kDa)

10.31

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	138
AcoI	YGGCCR	3 cut(s)	42, 52, 210
AcsI	RAATTY	2 cut(s)	225, 404
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	2 cut(s)	205, 238
AluBI	AGCT	3 cut(s)	120, 180, 359
AluI	AGCT	3 cut(s)	120, 180, 359
Alw21I	GWGCWC	2 cut(s)	122, 361
Alw26I	GTCTC	1 cut(s)	42
AoxI	GGCC	3 cut(s)	42, 52, 210
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	2 cut(s)	225, 404
AsuC2I	CCSGG	1 cut(s)	192
BanII	GRGCYC	2 cut(s)	122, 361
BauI	CACGAG	1 cut(s)	354
Bbv12I	GWGCWC	2 cut(s)	122, 361
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	3 cut(s)	67, 261, 273
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	409
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 238
Bse118I	RCCGGY	2 cut(s)	32, 231
Bse1I	ACTGG	1 cut(s)	82
BseLI	CCNNNNNNNGG	2 cut(s)	205, 238
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	4 cut(s)	112, 182, 185, 289
BseX3I	CGGCCG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	92
Bsh1285I	CGRYCG	2 cut(s)	55, 130
BshFI	GGCC	3 cut(s)	44, 54, 212
BsiEI	CGRYCG	2 cut(s)	55, 130
BsiHKAI	GWGCWC	2 cut(s)	122, 361
BsiSI	CCGG	6 cut(s)	33, 45, 55, 192, 213, 232
BslI	CCNNNNNNNGG	2 cut(s)	205, 238
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsnI	GGCC	3 cut(s)	44, 54, 212
Bsp1286I	GDGCHC	2 cut(s)	122, 361
Bsp143I	GATC	2 cut(s)	3, 127
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	3 cut(s)	44, 54, 212
BspHI	TCATGA	1 cut(s)	385
BsrFI	RCCGGY	2 cut(s)	32, 231
BsrI	ACTGG	1 cut(s)	82
BssAI	RCCGGY	2 cut(s)	32, 231
BssMI	GATC	2 cut(s)	3, 127
BssNI	GRCGYC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	354
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	6, 130
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	3, 127
BstMCI	CGRYCG	2 cut(s)	55, 130
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	91
BstSNI	TACGTA	1 cut(s)	341
BstV1I	GCAGC	1 cut(s)	92
BstZI	CGGCCG	1 cut(s)	52
BsuRI	GGCC	3 cut(s)	44, 54, 212
Cac8I	GCNNGC	1 cut(s)	178
CciI	TCATGA	1 cut(s)	385
Cfr10I	RCCGGY	2 cut(s)	32, 231
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	3 cut(s)	158, 187, 386
CviJI	RGCY	9 cut(s)	44, 54, 90, 120, 134, 180, 212, 288, 359
CviKI_1	RGCY	9 cut(s)	44, 54, 90, 120, 134, 180, 212, 288, 359
CviQI	GTAC	1 cut(s)	342
DpnI	GATC	2 cut(s)	5, 129
DpnII	GATC	2 cut(s)	3, 127
EaeI	YGGCCR	3 cut(s)	42, 52, 210
EagI	CGGCCG	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Ecl136II	GAGCTC	2 cut(s)	120, 359
EclXI	CGGCCG	1 cut(s)	52
Eco105I	TACGTA	1 cut(s)	341
Eco24I	GRGCYC	2 cut(s)	122, 361
Eco52I	CGGCCG	1 cut(s)	52
Eco53kI	GAGCTC	2 cut(s)	120, 359
EcoICRI	GAGCTC	2 cut(s)	120, 359
EcoT38I	GRGCYC	2 cut(s)	122, 361
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	3 cut(s)	161, 190, 389
FaiI	YATR	7 cut(s)	159, 188, 311, 322, 349, 351, 387
FatI	CATG	3 cut(s)	157, 186, 385
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	106
FriOI	GRGCYC	2 cut(s)	122, 361
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	1 cut(s)	409
GluI	GCNGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	65
HaeIII	GGCC	3 cut(s)	44, 54, 212
HapII	CCGG	6 cut(s)	33, 45, 55, 192, 213, 232
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	3 cut(s)	161, 190, 389
HinfI	GANTC	3 cut(s)	58, 195, 327
HpaII	CCGG	6 cut(s)	33, 45, 55, 192, 213, 232
Hpy188I	TCNGA	3 cut(s)	117, 127, 332
Hpy188III	TCNNGA	2 cut(s)	203, 386
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	6 cut(s)	34, 110, 232, 245, 251, 383
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	3 cut(s)	340, 369, 394
HpyCH4V	TGCA	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpySE526I	ACGT	3 cut(s)	340, 369, 394
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	161, 190, 389
Kzo9I	GATC	2 cut(s)	3, 127
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	9 cut(s)	46, 49, 58, 68, 95, 139, 205, 226, 245
Lsp1109I	GCAGC	1 cut(s)	92
MaeI	CTAG	1 cut(s)	409
MaeII	ACGT	3 cut(s)	340, 369, 394
MaeIII	GTNAC	2 cut(s)	95, 290
MalI	GATC	2 cut(s)	5, 129
MboI	GATC	2 cut(s)	3, 127
MboII	GAAGA	2 cut(s)	234, 283
MhlI	GDGCHC	2 cut(s)	122, 361
MluCI	AATT	3 cut(s)	111, 225, 404
MlyI	GAGTC	1 cut(s)	321
MnlI	CCTC	9 cut(s)	133, 160, 163, 166, 199, 261, 267, 383, 410
MseI	TTAA	2 cut(s)	297, 366
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	6 cut(s)	33, 45, 55, 192, 213, 232
MspR9I	CCNGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	60
NciI	CCSGG	1 cut(s)	192
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	2 cut(s)	3, 127
NlaIII	CATG	3 cut(s)	161, 190, 389
PagI	TCATGA	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	58, 195
PkrI	GCNGC	1 cut(s)	107
Ple19I	CGATCG	1 cut(s)	130
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
Ppu21I	YACGTR	1 cut(s)	341
Psp124BI	GAGCTC	2 cut(s)	122, 361
PvuI	CGATCG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	2 cut(s)	122, 361
SaqAI	TTAA	2 cut(s)	297, 366
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	2 cut(s)	3, 127
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	2 cut(s)	122, 361
SetI	ASST	9 cut(s)	26, 102, 122, 182, 210, 343, 361, 372, 397
SfcI	CTRYAG	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	156
SnaBI	TACGTA	1 cut(s)	341
Sse9I	AATT	3 cut(s)	111, 225, 404
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	1 cut(s)	409
SstI	GAGCTC	2 cut(s)	122, 361
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	3 cut(s)	343, 372, 397
TaqI	TCGA	4 cut(s)	27, 71, 130, 266
TasI	AATT	3 cut(s)	111, 225, 404
TfiI	GAWTC	2 cut(s)	58, 195
Tru1I	TTAA	2 cut(s)	297, 366
Tru9I	TTAA	2 cut(s)	297, 366
TseI	GCWGC	1 cut(s)	105
TspDTI	ATGAA	2 cut(s)	374, 402
TspGWI	ACGGA	2 cut(s)	234, 339
XapI	RAATTY	2 cut(s)	225, 404
XspI	CTAG	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.