Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000555.1

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Forward (+)

81125 .. 83638

Gene Structure 2514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000555.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgatcattggcgaaaaccgcaccttcgacgccggtttggtggccggagacggtcggaatctccggaaatcgacaaaacttccaaattgctacagtgagcttcacggcttaaatccgagctcctccagtcgagtcatcgaaaaacgccaccgcaggtgtgacaaggaggaggatgcgagcttgccggtacccggattccgtcatggggtggccggaggaggaagaaatcggtggaggaaaaatcgggctgaagaggaggaaatgatcggggaagaggagagagaaaacttggagctcaactcctggtcccaaggactactcgtcatctcgaaccacatcccctacactcagcttctcaaattgaacagagaatcgaagctcaagcatgtaattaagcttccacggatcgaattgcggcagaaggccaagttggtcctacatgtcgttgttgaagtcagcggaggtgcctcttccatacttgagtttcctggagagaatgtcgacggtggtggcatgaatttagaggatgaggaagccgatgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

181

Amino Acids

20.29

Weight (kDa)

6.12

Isoelectric Point (pI)

59.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	144
Acc36I	ACCTGC	1 cut(s)	144
Acc65I	GGTACC	1 cut(s)	187
AccB1I	GGYRCC	2 cut(s)	187, 464
AccI	GTMKAC	1 cut(s)	501
AccIII	TCCGGA	1 cut(s)	63
AciI	CCGC	4 cut(s)	19, 151, 415, 459
AclWI	GGATC	1 cut(s)	413
AcoI	YGGCCR	2 cut(s)	42, 210
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	1 cut(s)	270
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	191, 205
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	2 cut(s)	364, 452
AhdI	GACNNNNNGTC	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	302, 487
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AluBI	AGCT	7 cut(s)	100, 120, 180, 295, 352, 379, 397
AluI	AGCT	7 cut(s)	100, 120, 180, 295, 352, 379, 397
Alw21I	GWGCWC	2 cut(s)	122, 297
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	413
Aor13HI	TCCGGA	1 cut(s)	63
AoxI	GGCC	3 cut(s)	42, 210, 423
ApoI	RAATTY	1 cut(s)	517
Asp718I	GGTACC	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	306, 433
AsuC2I	CCSGG	1 cut(s)	192
AvaII	GGWCC	2 cut(s)	306, 433
BanI	GGYRCC	2 cut(s)	187, 464
BanII	GRGCYC	2 cut(s)	122, 297
BarI	GAAGNNNNNNTAC	2 cut(s)	381, 413
Bbv12I	GWGCWC	2 cut(s)	122, 297
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	2 cut(s)	304, 489
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	144
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	3 cut(s)	192, 304, 489
Bme18I	GGWCC	2 cut(s)	306, 433
BmeRI	GACNNNNNGTC	1 cut(s)	320
BmgT120I	GGNCC	2 cut(s)	306, 433
BmiI	GGNNCC	3 cut(s)	189, 308, 466
BmrFI	CCNGG	3 cut(s)	192, 304, 489
BmsI	GCATC	1 cut(s)	163
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpmI	CTGGAG	2 cut(s)	109, 510
BpuEI	CTTGAG	2 cut(s)	365, 500
BpuMI	CCSGG	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	310, 401
BsaWI	WCCGGW	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 205
Bse118I	RCCGGY	2 cut(s)	32, 184
Bse1I	ACTGG	1 cut(s)	126
BseAI	TCCGGA	1 cut(s)	63
BseBI	CCWGG	2 cut(s)	304, 489
BseDI	CCNNGG	2 cut(s)	310, 401
BseGI	GGATG	3 cut(s)	178, 336, 532
BseLI	CCNNNNNNNGG	2 cut(s)	191, 205
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	5 cut(s)	112, 182, 231, 269, 290
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	3 cut(s)	44, 212, 425
BshNI	GGYRCC	2 cut(s)	187, 464
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	122, 297
BsiSI	CCGG	6 cut(s)	33, 45, 64, 185, 192, 213
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	191, 205
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	3 cut(s)	44, 212, 425
Bsp1286I	GDGCHC	2 cut(s)	122, 297
Bsp13I	TCCGGA	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	3, 264, 405
BspACI	CCGC	4 cut(s)	19, 151, 415, 459
BspANI	GGCC	3 cut(s)	44, 212, 425
BspCNI	CTCAG	1 cut(s)	361
BspEI	TCCGGA	1 cut(s)	63
BspLI	GGNNCC	3 cut(s)	189, 308, 466
BspMI	ACCTGC	1 cut(s)	144
BspPI	GGATC	1 cut(s)	413
BspT107I	GGYRCC	2 cut(s)	187, 464
BsrFI	RCCGGY	2 cut(s)	32, 184
BsrI	ACTGG	1 cut(s)	126
BssAI	RCCGGY	2 cut(s)	32, 184
BssECI	CCNNGG	2 cut(s)	310, 401
BssMI	GATC	3 cut(s)	3, 264, 405
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	310
Bst2UI	CCWGG	2 cut(s)	304, 489
Bst4CI	ACNGT	3 cut(s)	53, 95, 506
Bst6I	CTCTTC	3 cut(s)	246, 267, 475
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	178, 182
BstDEI	CTNAG	1 cut(s)	348
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	3 cut(s)	178, 336, 532
BstKTI	GATC	3 cut(s)	6, 267, 408
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	3 cut(s)	3, 264, 405
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNI	CCWGG	2 cut(s)	304, 489
BstNSI	RCATGY	2 cut(s)	389, 443
BstSCI	CCNGG	3 cut(s)	190, 302, 487
BstSFI	CTRYAG	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	44, 212, 425
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	3 cut(s)	178, 336, 532
BtsIMutI	CAGTG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	178, 182
Cfr10I	RCCGGY	2 cut(s)	32, 184
Cfr13I	GGNCC	2 cut(s)	306, 433
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	4 cut(s)	203, 386, 440, 514
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	3 cut(s)	5, 266, 407
DpnII	GATC	3 cut(s)	3, 264, 405
DriI	GACNNNNNGTC	1 cut(s)	320
EaeI	YGGCCR	2 cut(s)	42, 210
Eam1104I	CTCTTC	3 cut(s)	246, 267, 475
Eam1105I	GACNNNNNGTC	1 cut(s)	320
EarI	CTCTTC	3 cut(s)	246, 267, 475
Ecl136II	GAGCTC	2 cut(s)	120, 295
Eco130I	CCWWGG	1 cut(s)	310
Eco24I	GRGCYC	2 cut(s)	122, 297
Eco47I	GGWCC	2 cut(s)	306, 433
Eco53kI	GAGCTC	2 cut(s)	120, 295
Eco57I	CTGAAG	1 cut(s)	270
EcoICRI	GAGCTC	2 cut(s)	120, 295
EcoRII	CCWGG	2 cut(s)	302, 487
EcoT14I	CCWWGG	1 cut(s)	310
EcoT38I	GRGCYC	2 cut(s)	122, 297
ErhI	CCWWGG	1 cut(s)	310
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	4 cut(s)	206, 389, 443, 517
FaiI	YATR	5 cut(s)	204, 387, 441, 476, 515
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	4 cut(s)	202, 385, 439, 513
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	3 cut(s)	185, 323, 539
FriOI	GRGCYC	2 cut(s)	122, 297
Fsp4HI	GCNGC	1 cut(s)	416
GluI	GCNGC	1 cut(s)	416
GsuI	CTGGAG	2 cut(s)	109, 510
HaeIII	GGCC	3 cut(s)	44, 212, 425
HapII	CCGG	6 cut(s)	33, 45, 64, 185, 192, 213
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	4 cut(s)	206, 389, 443, 517
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	4 cut(s)	58, 132, 195, 371
HpaII	CCGG	6 cut(s)	33, 45, 64, 185, 192, 213
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	2 cut(s)	57, 117
Hpy188III	TCNNGA	2 cut(s)	64, 328
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	2 cut(s)	32, 506
HpyAV	CCTTC	2 cut(s)	34, 415
HpyCH4III	ACNGT	3 cut(s)	53, 95, 506
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	348
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	206, 389, 443, 517
Kpn2I	TCCGGA	1 cut(s)	63
KpnI	GGTACC	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 264, 405
LmnI	GCTCC	2 cut(s)	125, 292
LweI	GCATC	1 cut(s)	163
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	3 cut(s)	5, 266, 407
MboI	GATC	3 cut(s)	3, 264, 405
MboII	GAAGA	4 cut(s)	234, 263, 284, 462
MhlI	GDGCHC	2 cut(s)	122, 297
MluCI	AATT	5 cut(s)	85, 359, 390, 410, 517
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	1 cut(s)	35
MroI	TCCGGA	1 cut(s)	63
MseI	TTAA	2 cut(s)	110, 393
MspA1I	CMGCKG	1 cut(s)	459
MspI	CCGG	6 cut(s)	33, 45, 64, 185, 192, 213
MspR9I	CCNGG	3 cut(s)	192, 304, 489
MvaI	CCWGG	2 cut(s)	304, 489
MwoI	GCNNNNNNNGC	1 cut(s)	18
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	3 cut(s)	3, 264, 405
NlaIII	CATG	4 cut(s)	206, 389, 443, 517
NlaIV	GGNNCC	3 cut(s)	189, 308, 466
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	2 cut(s)	389, 443
PaqCI	CACCTGC	1 cut(s)	144
PciI	ACATGT	1 cut(s)	439
PfeI	GAWTC	3 cut(s)	58, 195, 371
PfoI	TCCNGGA	1 cut(s)	487
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PscI	ACATGT	1 cut(s)	439
Psp124BI	GAGCTC	2 cut(s)	122, 297
Psp6I	CCWGG	2 cut(s)	302, 487
PspGI	CCWGG	2 cut(s)	302, 487
PspN4I	GGNNCC	3 cut(s)	189, 308, 466
PspPI	GGNCC	2 cut(s)	306, 433
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SacI	GAGCTC	2 cut(s)	122, 297
SalI	GTCGAC	1 cut(s)	500
SaqAI	TTAA	2 cut(s)	110, 393
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	3 cut(s)	3, 264, 405
Sau96I	GGNCC	2 cut(s)	306, 433
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	3 cut(s)	192, 304, 489
SduI	GDGCHC	2 cut(s)	122, 297
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	2 cut(s)	306, 433
SmlI	CTYRAG	2 cut(s)	380, 479
SmoI	CTYRAG	2 cut(s)	380, 479
Sse9I	AATT	5 cut(s)	85, 359, 390, 410, 517
SsiI	CCGC	4 cut(s)	19, 151, 415, 459
SstI	GAGCTC	2 cut(s)	122, 297
StyD4I	CCNGG	3 cut(s)	190, 302, 487
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	3 cut(s)	53, 95, 506
TaqI	TCGA	8 cut(s)	27, 71, 130, 138, 329, 374, 408, 501
TasI	AATT	5 cut(s)	85, 359, 390, 410, 517
TauI	GCSGC	1 cut(s)	418
TfiI	GAWTC	3 cut(s)	58, 195, 371
Tru1I	TTAA	2 cut(s)	110, 393
Tru9I	TTAA	2 cut(s)	110, 393
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	530
TspGWI	ACGGA	2 cut(s)	188, 418
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	2 cut(s)	306, 433
XapI	RAATTY	1 cut(s)	517
XceI	RCATGY	2 cut(s)	389, 443
XmiI	GTMKAC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.