Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007137.1

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Reverse (-)

84464 .. 84817

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007137.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgatcattggcaaaaaccgaaccttcgacgccggtttggtggctggacatggccggaatcgcagaaaatcgacgaatgttccgataggctacagtaagctacacgactcaaaatcgagctccttcggccgaatcactgcaaaacgccacaacagatgtgacaaggaggaagaggcaagcttgccgttgtccggattccgtcatgggtcggctggagaaggaagaaatcggagtaggaagaatcggaccgaagaggagaatagggtcggggaagaagagagagaaaactgggtaggtttccaaaaatggcaacttatcacagtaactttctatatttatagaaagttactgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

13.51

Weight (kDa)

10.27

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	191
AcoI	YGGCCR	2 cut(s)	52, 127
AcyI	GRCGYC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	191
AluBI	AGCT	3 cut(s)	100, 120, 180
AluI	AGCT	3 cut(s)	100, 120, 180
Alw21I	GWGCWC	1 cut(s)	122
Aor13HI	TCCGGA	1 cut(s)	191
AoxI	GGCC	2 cut(s)	52, 127
AspS9I	GGNCC	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	169
BclI	TGATCA	1 cut(s)	3
BfmI	CTRYAG	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BmrI	ACTGGG	1 cut(s)	298
BmuI	ACTGGG	1 cut(s)	298
BpmI	CTGGAG	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	293
BseAI	TCCGGA	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	269
BseX3I	CGGCCG	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	54, 129
BsiEI	CGRYCG	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	33, 55, 192
BslI	CCNNNNNNNGG	1 cut(s)	191
BsnI	GGCC	2 cut(s)	54, 129
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	3
BspANI	GGCC	2 cut(s)	54, 129
BspEI	TCCGGA	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	293
BssAI	RCCGGY	1 cut(s)	32
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	30
Bst4CI	ACNGT	3 cut(s)	95, 322, 351
Bst6I	CTCTTC	3 cut(s)	165, 246, 270
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	178, 182
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 126
BstSFI	CTRYAG	1 cut(s)	91
BstZI	CGGCCG	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	54, 129
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	178, 182
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	246
CpoI	CGGWCCG	1 cut(s)	246
CseI	GACGC	1 cut(s)	38
CspI	CGGWCCG	1 cut(s)	246
CviAII	CATG	2 cut(s)	50, 203
CviJI	RGCY	8 cut(s)	44, 54, 90, 100, 120, 129, 180, 212
CviKI_1	RGCY	8 cut(s)	44, 54, 90, 100, 120, 129, 180, 212
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	2 cut(s)	52, 127
EagI	CGGCCG	1 cut(s)	127
Eam1104I	CTCTTC	3 cut(s)	165, 246, 270
EarI	CTCTTC	3 cut(s)	165, 246, 270
Ecl136II	GAGCTC	1 cut(s)	120
EclXI	CGGCCG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	246
Eco52I	CGGCCG	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	2 cut(s)	53, 206
FaiI	YATR	4 cut(s)	51, 204, 333, 339
FatI	CATG	2 cut(s)	49, 202
FbaI	TGATCA	1 cut(s)	3
FriOI	GRGCYC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	54, 129
HapII	CCGG	3 cut(s)	33, 55, 192
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	53, 206
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	5 cut(s)	58, 107, 132, 195, 241
HpaII	CCGG	3 cut(s)	33, 55, 192
Hpy188I	TCNGA	3 cut(s)	84, 231, 246
Hpy188III	TCNNGA	1 cut(s)	192
Hpy99I	CGWCG	2 cut(s)	32, 76
HpyAV	CCTTC	3 cut(s)	34, 133, 212
HpyCH4III	ACNGT	3 cut(s)	95, 322, 351
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 126
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	53, 206
Kpn2I	TCCGGA	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	6 cut(s)	30, 46, 68, 198, 205, 274
MaeIII	GTNAC	3 cut(s)	158, 322, 345
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	6 cut(s)	182, 234, 250, 263, 284, 287
MhlI	GDGCHC	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	3 cut(s)	160, 166, 247
MroI	TCCGGA	1 cut(s)	191
MspI	CCGG	3 cut(s)	33, 55, 192
MwoI	GCNNNNNNNGC	2 cut(s)	60, 126
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	53, 206
NmuCI	GTSAC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	4 cut(s)	58, 132, 195, 241
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp124BI	GAGCTC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	246
Rsr2I	CGGWCCG	1 cut(s)	246
RsrII	CGGWCCG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	122
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	5 cut(s)	26, 102, 122, 182, 298
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	246
SstI	GAGCTC	1 cut(s)	122
TaaI	ACNGT	3 cut(s)	95, 322, 351
TaqI	TCGA	3 cut(s)	27, 71, 116
TaqII	GACCGA	1 cut(s)	263
TfiI	GAWTC	4 cut(s)	58, 132, 195, 241
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.