Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002343.1

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Reverse (-)

256477 .. 259539

Gene Structure 3063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002343.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atgatctatgtcaaaaaccgaaccttcgacgccaatttggtggctggagacggccggaatcgccggaaattgactgaaatcccgatttgctacagtaaccttcacatctccaaatcaagctcttccggccaaatcactgcaaaacaccaccacagacgtgacaaaggtgaagaggcgagccagcagatgcccggattccatcgtggggtggcgggaggaggaagaatcgggccgaagaggaagaaaaggtcgggggagaggagagagaaaagaccgtgcggaacgcacagcaacccatgccggtgcaaggtggttggccctaccttggggttcctggccttcgccgcggcggcgatcgtggagtggcctgtgggggctcttgtctactgcttccgccacatgaagggtcgccgaattatggctcatccggccaccgttgtttaccccaaagttaccaattccattcccatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.4

Weight (kDa)

10.69

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	1 cut(s)	347
AciI	CCGC	6 cut(s)	212, 279, 345, 347, 350, 394
AcoI	YGGCCR	3 cut(s)	52, 127, 429
AcyI	GRCGYC	1 cut(s)	30
AfiI	CCNNNNNNNGG	6 cut(s)	205, 307, 325, 326, 403, 418
AjiI	CACGTC	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	333
AleI	CACNNNNGTG	1 cut(s)	156
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	42
AoxI	GGCC	7 cut(s)	52, 127, 230, 316, 336, 365, 429
AspS9I	GGNCC	2 cut(s)	230, 317
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	379
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	335
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	91
BglI	GCCNNNNNGGC	1 cut(s)	350
BisI	GCNGC	3 cut(s)	345, 348, 351
BlsI	GCNGC	3 cut(s)	346, 349, 352
Bme1390I	CCNGG	2 cut(s)	192, 335
BmgBI	CACGTC	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	230, 317
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	2 cut(s)	192, 335
BmsI	GCATC	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	324, 345
Bsc4I	CCNNNNNNNGG	6 cut(s)	205, 307, 325, 326, 403, 418
Bse118I	RCCGGY	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	324, 345
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	6 cut(s)	205, 307, 325, 326, 403, 418
BseRI	GAGGAG	2 cut(s)	231, 274
BseX3I	CGGCCG	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	347
Bsh1285I	CGRYCG	2 cut(s)	55, 357
BshFI	GGCC	7 cut(s)	54, 129, 232, 318, 338, 367, 431
BsiEI	CGRYCG	2 cut(s)	55, 357
BsiSI	CCGG	6 cut(s)	55, 64, 126, 192, 301, 428
BslI	CCNNNNNNNGG	6 cut(s)	205, 307, 325, 326, 403, 418
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsnI	GGCC	7 cut(s)	54, 129, 232, 318, 338, 367, 431
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	2 cut(s)	3, 354
BspACI	CCGC	6 cut(s)	212, 279, 345, 347, 350, 394
BspANI	GGCC	7 cut(s)	54, 129, 232, 318, 338, 367, 431
BspFNI	CGCG	1 cut(s)	347
BspLI	GGNNCC	1 cut(s)	332
BspQI	GCTCTTC	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	2 cut(s)	324, 345
BssMI	GATC	2 cut(s)	3, 354
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	3 cut(s)	95, 276, 436
Bst6I	CTCTTC	3 cut(s)	127, 165, 230
BstACI	GRCGYC	1 cut(s)	30
BstAPI	GCANNNNNTGC	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	178, 182
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	1 cut(s)	347
BstKTI	GATC	2 cut(s)	6, 357
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	3, 354
BstMCI	CGRYCG	2 cut(s)	55, 357
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 126, 297, 344, 350, 428
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	190, 333
BstSFI	CTRYAG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	347
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstZI	CGGCCG	1 cut(s)	52
BsuRI	GGCC	7 cut(s)	54, 129, 232, 318, 338, 367, 431
BtgI	CCRYGG	1 cut(s)	345
BtrI	CACGTC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	178, 182
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	230, 317
Cfr42I	CCGCGG	1 cut(s)	348
CseI	GACGC	1 cut(s)	38
CviAII	CATG	2 cut(s)	297, 400
DpnI	GATC	2 cut(s)	5, 356
DpnII	GATC	2 cut(s)	3, 354
EaeI	YGGCCR	3 cut(s)	52, 127, 429
EagI	CGGCCG	1 cut(s)	52
Eam1104I	CTCTTC	3 cut(s)	127, 165, 230
EarI	CTCTTC	3 cut(s)	127, 165, 230
EciI	GGCGGA	1 cut(s)	383
EclXI	CGGCCG	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	379
Eco52I	CGGCCG	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	2 cut(s)	300, 403
FaiI	YATR	4 cut(s)	9, 298, 401, 419
FatI	CATG	2 cut(s)	296, 399
FauI	CCCGC	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	3 cut(s)	345, 348, 351
FokI	GGATG	1 cut(s)	411
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	3 cut(s)	345, 348, 351
GluI	GCNGC	3 cut(s)	345, 348, 351
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	7 cut(s)	54, 129, 232, 318, 338, 367, 431
HapII	CCGG	6 cut(s)	55, 64, 126, 192, 301, 428
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	300, 403
HinfI	GANTC	3 cut(s)	58, 195, 225
HpaII	CCGG	6 cut(s)	55, 64, 126, 192, 301, 428
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	2 cut(s)	385, 442
Hpy188III	TCNNGA	1 cut(s)	82
Hpy8I	GTNNAC	2 cut(s)	385, 442
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	4 cut(s)	34, 110, 349, 397
HpyCH4III	ACNGT	3 cut(s)	95, 276, 436
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	140, 306
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 126, 297, 344, 350, 428
HpySE526I	ACGT	1 cut(s)	157
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	300, 403
KspI	CCGCGG	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	3, 354
LguI	GCTCTTC	1 cut(s)	127
LweI	GCATC	1 cut(s)	177
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	3 cut(s)	95, 158, 451
MalI	GATC	2 cut(s)	5, 356
MboI	GATC	2 cut(s)	3, 354
MboII	GAAGA	5 cut(s)	114, 182, 234, 247, 253
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	4 cut(s)	34, 68, 414, 457
MnlI	CCTC	5 cut(s)	166, 209, 212, 231, 252
MslI	CAYNNNNRTG	2 cut(s)	156, 301
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	6 cut(s)	55, 64, 126, 192, 301, 428
MspR9I	CCNGG	2 cut(s)	192, 335
MvaI	CCWGG	1 cut(s)	335
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	6 cut(s)	60, 126, 297, 344, 350, 428
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	2 cut(s)	3, 354
NlaIII	CATG	2 cut(s)	300, 403
NlaIV	GGNNCC	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	158
OliI	CACNNNNGTG	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	58, 195, 225
PkrI	GCNGC	3 cut(s)	346, 349, 352
Ple19I	CGATCG	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	2 cut(s)	230, 317
PvuI	CGATCG	1 cut(s)	357
RseI	CAYNNNNRTG	2 cut(s)	156, 301
SacII	CCGCGG	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	127
SatI	GCNGC	3 cut(s)	345, 348, 351
Sau3AI	GATC	2 cut(s)	3, 354
Sau96I	GGNCC	2 cut(s)	230, 317
ScrFI	CCNGG	2 cut(s)	192, 335
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	8 cut(s)	26, 102, 122, 160, 169, 251, 312, 326
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	91
Sfr303I	CCGCGG	1 cut(s)	348
SgrBI	CCGCGG	1 cut(s)	348
SmiMI	CAYNNNNRTG	2 cut(s)	156, 301
Sse9I	AATT	4 cut(s)	34, 68, 414, 457
SsiI	CCGC	6 cut(s)	212, 279, 345, 347, 350, 394
StyD4I	CCNGG	2 cut(s)	190, 333
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	3 cut(s)	95, 276, 436
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	27
TasI	AATT	4 cut(s)	34, 68, 414, 457
TauI	GCSGC	3 cut(s)	347, 350, 353
TfiI	GAWTC	3 cut(s)	58, 195, 225
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.