Rorug03G0261800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002742
Physical Location & Seq
Forward (+)
25247540 .. 25252036
4497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0261800.1

Sequence Viewer

Length: 1275 bp
ATGGCTTCGTCGTCCTCGGATCCTGGTCCGAAGACCGAAAGCGGAAGCGGCAGCGGCGGCGGAGCGGAGGCCTCGGAAGCAGCGGCGGCGGCTGCGGCGGTGGCGACCGATCAGCAATTGCTTTACAGAGGGCTGAAGAAAGCGAAGAAGGAGAGAGGTTGCACGGCCAAAGAGCGCATCAGCAAAATGCCTCCCTGTGCCGCTGGAAAACGCAGCTCCATTTACCGCGGAGTCACTCGGCATAGGTGGACGGGTCGTTACGAAGCTCATCTATGGGATAAAAGTACCTGGAACCAGAACCAGAATAAGAAGGGAAAGCAAGTTTACTTGGGCGCGTATGATGATGAAGAGGCTGCAGCCAGAGCTTATGATCTTGCTGCCTTGAAATATTGGGGCCCTGGCACTCTGATTAATTTCCCTGTTACTGACTACACAAGAGATCTAGAAGAGATGCAGAATGTGTCAAGGGAGGAATATCTTGCATCTCTTCGCAGGAAGAGCAGTGGCTTCTCTAGAGGAATGTCTAAATATCGCGCGCTCTCAAGCCGTTGGGAGCCATCGTTTGGTCGTATGGGTGGATCTGAATACTTCAATAGCATCCATTATGGCACAGGAGATGATCCAGCAACAGACAATGAATTTTTAGGAACGTTTTGCATTGAAAGAAAGATTGATTTAACAAGTTACATCAAGTGGTGGGGGCCTAACAAAACTCGTCAAGCGGACAGCATGATAAAATCATCTGAGGAAGCAAAACATGGTTTTGCTGGAGATAGTGGAGGTGAACTTAAAACATTGGAATGGGAATCCCAGCCTACTGAACCATACCAGATGCCACGTTTGGGTGTCTGCCACGAAGGTAAAAAGCATAATGGTGCTAGAGTCTCTGCCATGAGCATCTTGTCACGGTCACCTGCTTATAAGAGCTTACAAGAGAAAGCATCAATTAAGCAAGAAAAGAATGCAGATAATGACGAGAATGAAAACAAAAATACGATGCACAAAAAGGACCATGGCAAGGCAATTGAGAAATCCACAAGTCATGATGCTGGGGATGAGAGACTGAATGCTTCATTAGGAATGAGTGGTGGATTGTCTCTCCAGAGGAATGCATTCCCATTGACTCCGTTCTTGTCTGCGCCACTGCTGACCAACTACAACATGATTGATCCATTAGTAGACCCCATTCTTTGGACATCTCTTGCTCCTGTTCTTCCCGAGGTTACAAAGACTGAGACCAGTGCAAGTTTCAGTTTATTTCGGCCTGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

424

Amino Acids

46.85

Weight (kDa)

8.6

Isoelectric Point (pI)

52.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 75 - 132 2.7e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 921
AarI CACCTGC 1 cut(s) 922
Acc36I ACCTGC 1 cut(s) 922
AccB7I CCANNNNNTGG 2 cut(s) 563, 1191
AccBSI CCGCTC 1 cut(s) 65
AccI GTMKAC 1 cut(s) 1179
AccII CGCG 4 cut(s) 228, 335, 534, 536
AclI AACGTT 1 cut(s) 650
AclWI GGATC 5 cut(s) 14, 27, 586, 614, 1163
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 638
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 4 cut(s) 563, 842, 1018, 1191
AgsI TTSAA 3 cut(s) 385, 592, 662
AjnI CCWGG 3 cut(s) 22, 287, 397
AluBI AGCT 4 cut(s) 216, 266, 365, 927
AluI AGCT 4 cut(s) 216, 266, 365, 927
Alw26I GTCTC 4 cut(s) 889, 1054, 1101, 1229
AlwI GGATC 5 cut(s) 14, 27, 586, 614, 1163
Ama87I CYCGRG 1 cut(s) 1217
AoxI GGCC 5 cut(s) 69, 165, 394, 701, 1262
ApaI GGGCCC 1 cut(s) 398
ApeKI GCWGC 7 cut(s) 51, 80, 92, 213, 353, 356, 377
ApoI RAATTY 1 cut(s) 638
AseI ATTAAT 1 cut(s) 411
Asp700I GAANNNNTTC 1 cut(s) 1112
AspLEI GCGC 5 cut(s) 177, 335, 536, 538, 1141
AspS9I GGNCC 5 cut(s) 26, 394, 395, 701, 1009
AsuHPI GGTGA 2 cut(s) 794, 903
AvaI CYCGRG 1 cut(s) 1217
AvaII GGWCC 2 cut(s) 26, 1009
AxyI CCTNAGG 1 cut(s) 1266
BaeGI GKGCMC 1 cut(s) 398
BamHI GGATCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 7 cut(s) 63, 79, 92, 225, 340, 364, 368
BccI CCATC 1 cut(s) 565
BceAI ACGGC 2 cut(s) 180, 531
BciT130I CCWGG 3 cut(s) 24, 289, 399
BcoDI GTCTC 4 cut(s) 889, 1054, 1101, 1229
BfaI CTAG 3 cut(s) 443, 513, 879
BfmI CTRYAG 1 cut(s) 354
BfuAI ACCTGC 1 cut(s) 922
BglII AGATCT 1 cut(s) 439
Bme1390I CCNGG 3 cut(s) 24, 289, 399
Bme18I GGWCC 2 cut(s) 26, 1009
BmeT110I CYCGRG 1 cut(s) 1217
BmgT120I GGNCC 5 cut(s) 26, 394, 395, 701, 1009
BmiI GGNNCC 6 cut(s) 21, 293, 395, 396, 555, 702
BmrFI CCNGG 3 cut(s) 24, 289, 399
BmsI GCATC 9 cut(s) 186, 441, 491, 606, 822, 906, 950, 987, 1036
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 2 cut(s) 789, 1085
BpuEI CTTGAG 1 cut(s) 526
BsaI GGTCTC 1 cut(s) 1229
BsaJI CCNNGG 6 cut(s) 15, 72, 226, 397, 1012, 1218
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 4 cut(s) 563, 842, 1018, 1191
Bse1I ACTGG 1 cut(s) 1239
Bse21I CCTNAGG 1 cut(s) 1266
BseBI CCWGG 3 cut(s) 24, 289, 399
BseDI CCNNGG 6 cut(s) 15, 72, 226, 397, 1012, 1218
BseGI GGATG 2 cut(s) 597, 1060
BseLI CCNNNNNNNGG 4 cut(s) 563, 842, 1018, 1191
BseMII CTCAG 3 cut(s) 735, 1224, 1257
BseNI ACTGG 1 cut(s) 1239
BsePI GCGCGC 1 cut(s) 534
BseSI GKGCMC 1 cut(s) 398
BseXI GCAGC 7 cut(s) 63, 79, 92, 225, 340, 364, 368
BseYI CCCAGC 2 cut(s) 810, 1049
Bsh1236I CGCG 4 cut(s) 228, 335, 534, 536
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 5 cut(s) 71, 167, 396, 703, 1264
BsiEI CGRYCG 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 1217
BslI CCNNNNNNNGG 4 cut(s) 563, 842, 1018, 1191
BsmAI GTCTC 4 cut(s) 889, 1054, 1101, 1229
BsmI GAATGC 4 cut(s) 967, 1072, 1112, 1114
BsnI GGCC 5 cut(s) 71, 167, 396, 703, 1264
Bso31I GGTCTC 1 cut(s) 1229
BsoBI CYCGRG 1 cut(s) 1217
Bsp120I GGGCCC 1 cut(s) 394
Bsp1286I GDGCHC 1 cut(s) 398
Bsp143I GATC 7 cut(s) 19, 109, 370, 439, 578, 619, 1168
Bsp19I CCATGG 1 cut(s) 1012
BspANI GGCC 5 cut(s) 71, 167, 396, 703, 1264
BspCNI CTCAG 3 cut(s) 736, 1225, 1258
BspFNI CGCG 4 cut(s) 228, 335, 534, 536
BspHI TCATGA 1 cut(s) 1042
BspLI GGNNCC 6 cut(s) 21, 293, 395, 396, 555, 702
BspMAI CTGCAG 1 cut(s) 358
BspMI ACCTGC 1 cut(s) 922
BspPI GGATC 5 cut(s) 14, 27, 586, 614, 1163
BspQI GCTCTTC 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 1229
BsrBI CCGCTC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 1239
BssECI CCNNGG 6 cut(s) 15, 72, 226, 397, 1012, 1218
BssHII GCGCGC 1 cut(s) 534
BssMI GATC 7 cut(s) 19, 109, 370, 439, 578, 619, 1168
BssT1I CCWWGG 1 cut(s) 1012
Bst2UI CCWGG 3 cut(s) 24, 289, 399
Bst4CI ACNGT 1 cut(s) 909
Bst6I CTCTTC 4 cut(s) 342, 441, 491, 492
BstC8I GCNNGC 1 cut(s) 536
BstDEI CTNAG 3 cut(s) 744, 1233, 1266
BstDSI CCRYGG 2 cut(s) 226, 1012
BstEII GGTNACC 1 cut(s) 909
BstF5I GGATG 2 cut(s) 597, 1060
BstFNI CGCG 4 cut(s) 228, 335, 534, 536
BstHHI GCGC 5 cut(s) 177, 335, 536, 538, 1141
BstKTI GATC 7 cut(s) 22, 112, 373, 442, 581, 622, 1171
BstMAI GTCTC 4 cut(s) 889, 1054, 1101, 1229
BstMBI GATC 7 cut(s) 19, 109, 370, 439, 578, 619, 1168
BstMCI CGRYCG 1 cut(s) 108
BstNI CCWGG 3 cut(s) 24, 289, 399
BstPI GGTNACC 1 cut(s) 909
BstSCI CCNGG 3 cut(s) 22, 287, 397
BstSFI CTRYAG 1 cut(s) 354
BstSLI GKGCMC 1 cut(s) 398
BstUI CGCG 4 cut(s) 228, 335, 534, 536
BstV1I GCAGC 7 cut(s) 63, 79, 92, 225, 340, 364, 368
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 3 cut(s) 19, 439, 578
BstYI RGATCY 3 cut(s) 19, 439, 578
Bsu36I CCTNAGG 1 cut(s) 1266
BsuRI GGCC 5 cut(s) 71, 167, 396, 703, 1264
BtgI CCRYGG 2 cut(s) 226, 1012
BtsCI GGATG 2 cut(s) 597, 1060
BtsI GCAGTG 2 cut(s) 508, 1142
BtsIMutI CAGTG 3 cut(s) 508, 1142, 1246
BveI ACCTGC 1 cut(s) 922
Cac8I GCNNGC 1 cut(s) 536
CciI TCATGA 1 cut(s) 1042
CfoI GCGC 5 cut(s) 177, 335, 536, 538, 1141
Cfr13I GGNCC 5 cut(s) 26, 394, 395, 701, 1009
Cfr42I CCGCGG 1 cut(s) 229
Csp6I GTAC 1 cut(s) 285
CviAII CATG 6 cut(s) 730, 758, 892, 1013, 1043, 1162
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 3 cut(s) 744, 1233, 1266
DpnI GATC 7 cut(s) 21, 111, 372, 441, 580, 621, 1170
DpnII GATC 7 cut(s) 19, 109, 370, 439, 578, 619, 1168
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 4 cut(s) 342, 441, 491, 492
EarI CTCTTC 4 cut(s) 342, 441, 491, 492
EciI GGCGGA 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 1012
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 398
Eco31I GGTCTC 1 cut(s) 1229
Eco47I GGWCC 2 cut(s) 26, 1009
Eco57I CTGAAG 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 1266
Eco88I CYCGRG 1 cut(s) 1217
Eco91I GGTNACC 1 cut(s) 909
EcoO109I RGGNCCY 3 cut(s) 394, 395, 701
EcoO65I GGTNACC 1 cut(s) 909
EcoRII CCWGG 3 cut(s) 22, 287, 397
EcoT14I CCWWGG 1 cut(s) 1012
EcoT22I ATGCAT 1 cut(s) 1114
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 1012
FaeI CATG 6 cut(s) 733, 761, 895, 1016, 1046, 1165
FatI CATG 6 cut(s) 729, 757, 891, 1012, 1042, 1161
FblI GTMKAC 1 cut(s) 1179
FokI GGATG 2 cut(s) 584, 1067
FriOI GRGCYC 1 cut(s) 398
FspBI CTAG 3 cut(s) 443, 513, 879
GlaI GCGC 5 cut(s) 176, 334, 535, 537, 1140
GsaI CCCAGC 2 cut(s) 814, 1053
GsuI CTGGAG 2 cut(s) 789, 1085
HaeIII GGCC 5 cut(s) 71, 167, 396, 703, 1264
HhaI GCGC 5 cut(s) 177, 335, 536, 538, 1141
Hin1II CATG 6 cut(s) 733, 761, 895, 1016, 1046, 1165
Hin6I GCGC 5 cut(s) 175, 333, 534, 536, 1139
HinP1I GCGC 5 cut(s) 175, 333, 534, 536, 1139
HinfI GANTC 4 cut(s) 231, 806, 882, 1123
HphI GGTGA 2 cut(s) 794, 903
Hpy166II GTNNAC 4 cut(s) 249, 325, 785, 1180
Hpy188I TCNGA 6 cut(s) 19, 30, 76, 408, 583, 745
Hpy188III TCNNGA 5 cut(s) 443, 513, 1043, 1102, 1217
Hpy8I GTNNAC 4 cut(s) 249, 325, 785, 1180
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 3 cut(s) 142, 304, 851
HpyCH4III ACNGT 1 cut(s) 909
HpyCH4IV ACGT 2 cut(s) 650, 838
HpyCH4V TGCA 9 cut(s) 162, 356, 454, 482, 657, 965, 1000, 1112, 1244
HpyF3I CTNAG 3 cut(s) 744, 1233, 1266
HpySE526I ACGT 2 cut(s) 650, 838
Hsp92II CATG 6 cut(s) 733, 761, 895, 1016, 1046, 1165
HspAI GCGC 5 cut(s) 175, 333, 534, 536, 1139
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 7 cut(s) 19, 109, 370, 439, 578, 619, 1168
LguI GCTCTTC 1 cut(s) 491
LmnI GCTCC 4 cut(s) 62, 221, 553, 1210
Lsp1109I GCAGC 7 cut(s) 63, 79, 92, 225, 340, 364, 368
LweI GCATC 9 cut(s) 186, 441, 491, 606, 822, 906, 950, 987, 1036
MaeI CTAG 3 cut(s) 443, 513, 879
MaeII ACGT 2 cut(s) 650, 838
MaeIII GTNAC 7 cut(s) 232, 257, 421, 683, 903, 909, 1222
MalI GATC 7 cut(s) 21, 111, 372, 441, 580, 621, 1170
MbiI CCGCTC 1 cut(s) 65
MboI GATC 7 cut(s) 19, 109, 370, 439, 578, 619, 1168
MboII GAAGA 8 cut(s) 43, 148, 157, 359, 458, 479, 508, 1205
MfeI CAATTG 2 cut(s) 116, 1023
MflI RGATCY 3 cut(s) 19, 439, 578
MhlI GDGCHC 1 cut(s) 398
MluCI AATT 5 cut(s) 116, 412, 638, 945, 1023
MlyI GAGTC 3 cut(s) 240, 891, 1117
Mph1103I ATGCAT 1 cut(s) 1114
MroXI GAANNNNTTC 1 cut(s) 1112
MseI TTAA 4 cut(s) 411, 677, 789, 948
MslI CAYNNNNRTG 2 cut(s) 799, 873
MspA1I CMGCKG 4 cut(s) 54, 83, 203, 228
MspR9I CCNGG 3 cut(s) 24, 289, 399
MunI CAATTG 2 cut(s) 116, 1023
Mva1269I GAATGC 4 cut(s) 967, 1072, 1112, 1114
MvaI CCWGG 3 cut(s) 24, 289, 399
MvnI CGCG 4 cut(s) 228, 335, 534, 536
NcoI CCATGG 1 cut(s) 1012
NdeII GATC 7 cut(s) 19, 109, 370, 439, 578, 619, 1168
NlaIII CATG 6 cut(s) 733, 761, 895, 1016, 1046, 1165
NlaIV GGNNCC 6 cut(s) 21, 293, 395, 396, 555, 702
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 3 cut(s) 232, 903, 909
NsiI ATGCAT 1 cut(s) 1114
PagI TCATGA 1 cut(s) 1042
PaqCI CACCTGC 1 cut(s) 922
PauI GCGCGC 1 cut(s) 534
PceI AGGCCT 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 491
PctI GAATGC 4 cut(s) 967, 1072, 1112, 1114
PdmI GAANNNNTTC 1 cut(s) 1112
PfeI GAWTC 1 cut(s) 806
PflMI CCANNNNNTGG 2 cut(s) 563, 1191
PleI GAGTC 3 cut(s) 239, 890, 1117
PpsI GAGTC 3 cut(s) 239, 890, 1117
PshBI ATTAAT 1 cut(s) 411
PsiI TTATAA 1 cut(s) 921
Psp1406I AACGTT 1 cut(s) 650
Psp6I CCWGG 3 cut(s) 22, 287, 397
PspEI GGTNACC 1 cut(s) 909
PspFI CCCAGC 2 cut(s) 810, 1049
PspGI CCWGG 3 cut(s) 22, 287, 397
PspN4I GGNNCC 6 cut(s) 21, 293, 395, 396, 555, 702
PspOMI GGGCCC 1 cut(s) 394
PspPI GGNCC 5 cut(s) 26, 394, 395, 701, 1009
PstI CTGCAG 1 cut(s) 358
PsuI RGATCY 3 cut(s) 19, 439, 578
PteI GCGCGC 1 cut(s) 534
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
RseI CAYNNNNRTG 2 cut(s) 799, 873
SacII CCGCGG 1 cut(s) 229
SapI GCTCTTC 1 cut(s) 491
SaqAI TTAA 4 cut(s) 411, 677, 789, 948
Sau3AI GATC 7 cut(s) 19, 109, 370, 439, 578, 619, 1168
Sau96I GGNCC 5 cut(s) 26, 394, 395, 701, 1009
SchI GAGTC 3 cut(s) 240, 891, 1117
ScrFI CCNGG 3 cut(s) 24, 289, 399
SduI GDGCHC 1 cut(s) 398
SfaNI GCATC 9 cut(s) 186, 441, 491, 606, 822, 906, 950, 987, 1036
SfcI CTRYAG 1 cut(s) 354
Sfr303I CCGCGG 1 cut(s) 229
SgrBI CCGCGG 1 cut(s) 229
SinI GGWCC 2 cut(s) 26, 1009
SmiMI CAYNNNNRTG 2 cut(s) 799, 873
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
Sse9I AATT 5 cut(s) 116, 412, 638, 945, 1023
SseBI AGGCCT 1 cut(s) 71
SspI AATATT 1 cut(s) 389
SspMI CTAG 3 cut(s) 443, 513, 879
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 3 cut(s) 22, 287, 397
StyI CCWWGG 1 cut(s) 1012
TaaI ACNGT 1 cut(s) 909
TaiI ACGT 2 cut(s) 653, 841
TaqII GACCGA 2 cut(s) 50, 122
TasI AATT 5 cut(s) 116, 412, 638, 945, 1023
TauI GCSGC 8 cut(s) 51, 57, 60, 86, 89, 92, 98, 203
TfiI GAWTC 1 cut(s) 806
Tru1I TTAA 4 cut(s) 411, 677, 789, 948
Tru9I TTAA 4 cut(s) 411, 677, 789, 948
TscAI CASTG 3 cut(s) 508, 1149, 1246
TseFI GTSAC 3 cut(s) 232, 903, 909
TseI GCWGC 7 cut(s) 51, 80, 92, 213, 353, 356, 377
Tsp45I GTSAC 3 cut(s) 232, 903, 909
TspDTI ATGAA 4 cut(s) 360, 651, 996, 1062
TspGWI ACGGA 1 cut(s) 1116
TspRI CASTG 3 cut(s) 508, 1149, 1246
Van91I CCANNNNNTGG 2 cut(s) 563, 1191
VpaK11BI GGWCC 2 cut(s) 26, 1009
VspI ATTAAT 1 cut(s) 411
XapI RAATTY 1 cut(s) 638
XbaI TCTAGA 2 cut(s) 442, 512
XmiI GTMKAC 1 cut(s) 1179
XmnI GAANNNNTTC 1 cut(s) 1112
XspI CTAG 3 cut(s) 443, 513, 879
Zsp2I ATGCAT 1 cut(s) 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.