Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Reverse (-)

27874283 .. 27875629

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG255200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAATCCTCTTGCTAGTTCATTTGTTTTTGGTGATCTTTATCACCTTAAGCCTCAGATTGGTTCATGGTTTAATGTTGACATTGATGGCAAAGATTGCTTCCAGATTCCTGATTGGGCTGGGCAAGGGTCGGGTCTTGCTAAAAATTTGATGAACTCGAATCCAGACCATGATTTCGGGGAATCGAAGTTCAAGCATGTAATTAAGCTTCCACGGATCGAATTGCGGCAGAAGGCCAAGTTGGTCCTACATGTCGTTGTTGAAGTCAGCGAAGGTGCCTCTTCCGTACTTGACTTTCCTGGTGAGAATGCCAGCGGTGGTGGCATGAATTTTGAGGATGAGGAAGCCGACGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

12.96

Weight (kDa)

4.74

Isoelectric Point (pI)

19.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	275
AciI	CCGC	2 cut(s)	226, 315
AclWI	GGATC	1 cut(s)	224
AcsI	RAATTY	2 cut(s)	145, 328
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	59
AflII	CTTAAG	1 cut(s)	47
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	193, 263
AjnI	CCWGG	1 cut(s)	298
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AloI	GAACNNNNNNTCC	2 cut(s)	173, 205
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	234
ApoI	RAATTY	2 cut(s)	145, 328
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	35, 44, 314
AvaII	GGWCC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	275
BarI	GAAGNNNNNNTAC	2 cut(s)	192, 224
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	300
BfaI	CTAG	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	47
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	300
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	343
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	119
BshFI	GGCC	1 cut(s)	236
BshNI	GGYRCC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	34, 216
BspACI	CCGC	2 cut(s)	226, 315
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	275
BspTI	CTTAAG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	2 cut(s)	34, 216
Bst2UI	CCWGG	1 cut(s)	300
Bst6I	CTCTTC	1 cut(s)	286
BstAFI	CTTAAG	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	313
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	2 cut(s)	37, 219
BstMBI	GATC	2 cut(s)	34, 216
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 321
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	2 cut(s)	200, 254
BstSCI	CCNGG	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	5 cut(s)	66, 170, 197, 251, 325
CviJI	RGCY	5 cut(s)	52, 119, 208, 236, 347
CviKI_1	RGCY	5 cut(s)	52, 119, 208, 236, 347
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	2 cut(s)	36, 218
DpnII	GATC	2 cut(s)	34, 216
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	298
FaeI	CATG	5 cut(s)	69, 173, 200, 254, 328
FaiI	YATR	5 cut(s)	67, 171, 198, 252, 326
FatI	CATG	5 cut(s)	65, 169, 196, 250, 324
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	227
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	1 cut(s)	227
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	236
Hin1II	CATG	5 cut(s)	69, 173, 200, 254, 328
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	4 cut(s)	4, 106, 160, 182
HphI	GGTGA	3 cut(s)	35, 44, 314
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	3 cut(s)	103, 110, 164
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	2 cut(s)	226, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 321
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	5 cut(s)	69, 173, 200, 254, 328
Kzo9I	GATC	2 cut(s)	34, 216
LpnPI	CCDG	7 cut(s)	105, 116, 123, 177, 285, 312, 325
MaeI	CTAG	1 cut(s)	15
MalI	GATC	2 cut(s)	36, 218
MboI	GATC	2 cut(s)	34, 216
MboII	GAAGA	1 cut(s)	273
MluCI	AATT	4 cut(s)	145, 201, 221, 328
MnlI	CCTC	5 cut(s)	18, 63, 289, 328, 334
MseI	TTAA	3 cut(s)	48, 72, 204
MspA1I	CMGCKG	1 cut(s)	315
MspCI	CTTAAG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	96, 321
NdeII	GATC	2 cut(s)	34, 216
NlaIII	CATG	5 cut(s)	69, 173, 200, 254, 328
NlaIV	GGNNCC	1 cut(s)	277
NspI	RCATGY	2 cut(s)	200, 254
PciI	ACATGT	1 cut(s)	250
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	4 cut(s)	4, 106, 160, 182
PkrI	GCNGC	1 cut(s)	228
PscI	ACATGT	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	244
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SaqAI	TTAA	3 cut(s)	48, 72, 204
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	2 cut(s)	34, 216
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	3 cut(s)	48, 210, 277
SinI	GGWCC	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	4 cut(s)	145, 201, 221, 328
SsiI	CCGC	2 cut(s)	226, 315
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	298
TaqI	TCGA	3 cut(s)	158, 185, 219
TasI	AATT	4 cut(s)	145, 201, 221, 328
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	4 cut(s)	4, 106, 160, 182
Tru1I	TTAA	3 cut(s)	48, 72, 204
Tru9I	TTAA	3 cut(s)	48, 72, 204
TspDTI	ATGAA	5 cut(s)	9, 17, 54, 167, 341
TspGWI	ACGGA	2 cut(s)	229, 274
Vha464I	CTTAAG	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	2 cut(s)	145, 328
XceI	RCATGY	2 cut(s)	200, 254
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.