Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000372.1

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Forward (+)

156643 .. 158603

Gene Structure 1961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000372.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgatccttggccaaaaccgaaccttcgaagccagtttggtggccggagaaggccggaatcgccggaaatcgagaaaactcccaaattgctacagtgaacttcactgctcaattccgagctccaccggccgagccaccgcaaatcaccaccacagcgtgacaaggatgaagaggcgagcttgccggtgcccggattccatcgtggggtggccggaggaggaagaaatcagaggaagaagaaattggccgaagaggaagaaagggtcgggggagaggagagagaaaagcccgcaaagaacaggcttcaccatcaccatcgccacccccccactcaacgcccaataccttagttctccccaacctaacagcaatatccccttggccgagcttcccttccgcagtgaagactatagcctccccccaaacacggagaactcagagaatatacctctcgacttattcgaaaccctactcactgcatcgcaacatctagaagctctgactcgcccaaaaagctctggtattgtcaacattgctatcaccaccgcaggggcttacggcacgacggcgtttatgtccttgtggcaacattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

197

Amino Acids

22.05

Weight (kDa)

9.77

Isoelectric Point (pI)

68.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	186
AciI	CCGC	4 cut(s)	138, 290, 397, 546
AcoI	YGGCCR	6 cut(s)	10, 42, 127, 209, 245, 381
AdeI	CACNNNGTG	1 cut(s)	157
AfiI	CCNNNNNNNGG	4 cut(s)	190, 204, 427, 549
AjuI	GAANNNNNNNTTGG	2 cut(s)	226, 258
AluBI	AGCT	5 cut(s)	120, 179, 388, 497, 516
AluI	AGCT	5 cut(s)	120, 179, 388, 497, 516
Alw21I	GWGCWC	1 cut(s)	122
AoxI	GGCC	7 cut(s)	10, 42, 52, 127, 209, 245, 381
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	4 cut(s)	137, 298, 304, 532
AsuII	TTCGAA	2 cut(s)	27, 462
BaeGI	GKGCMC	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	122
BccI	CCATC	3 cut(s)	206, 317, 323
BceAI	ACGGC	2 cut(s)	574, 582
BcnI	CCSGG	1 cut(s)	191
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	2 cut(s)	91, 409
Bme1390I	CCNGG	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	411
Bpu14I	TTCGAA	2 cut(s)	27, 462
BpuMI	CCSGG	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	7, 378
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 204, 427, 549
Bse118I	RCCGGY	2 cut(s)	125, 183
Bse1I	ACTGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	7, 378
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	4 cut(s)	190, 204, 427, 549
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	2 cut(s)	230, 289
BseSI	GKGCMC	1 cut(s)	191
BseX3I	CGGCCG	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	7 cut(s)	12, 44, 54, 129, 211, 247, 383
BshNI	GGYRCC	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	7 cut(s)	45, 55, 64, 126, 184, 191, 212
BslI	CCNNNNNNNGG	4 cut(s)	190, 204, 427, 549
BsnI	GGCC	7 cut(s)	12, 44, 54, 129, 211, 247, 383
Bsp119I	TTCGAA	2 cut(s)	27, 462
Bsp1286I	GDGCHC	2 cut(s)	122, 191
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	4 cut(s)	138, 290, 397, 546
BspANI	GGCC	7 cut(s)	12, 44, 54, 129, 211, 247, 383
BspCNI	CTCAG	1 cut(s)	449
BspLI	GGNNCC	1 cut(s)	188
BspT104I	TTCGAA	2 cut(s)	27, 462
BspT107I	GGYRCC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	531
BsrFI	RCCGGY	2 cut(s)	125, 183
BsrI	ACTGG	1 cut(s)	33
BssAI	RCCGGY	2 cut(s)	125, 183
BssECI	CCNNGG	2 cut(s)	7, 378
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	2 cut(s)	7, 378
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	2 cut(s)	164, 245
BstBI	TTCGAA	2 cut(s)	27, 462
BstC8I	GCNNGC	3 cut(s)	177, 181, 290
BstDEI	CTNAG	2 cut(s)	347, 436
BstF5I	GGATG	1 cut(s)	171
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 126, 513
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	2 cut(s)	91, 409
BstSLI	GKGCMC	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstZI	CGGCCG	1 cut(s)	127
BsuRI	GGCC	7 cut(s)	12, 44, 54, 129, 211, 247, 383
BtgZI	GCGATG	2 cut(s)	301, 465
BtsCI	GGATG	1 cut(s)	171
BtsI	GCAGTG	3 cut(s)	103, 406, 474
BtsIMutI	CAGTG	4 cut(s)	100, 103, 406, 474
Cac8I	GCNNGC	3 cut(s)	177, 181, 290
Cfr10I	RCCGGY	2 cut(s)	125, 183
DdeI	CTNAG	2 cut(s)	347, 436
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DraIII	CACNNNGTG	1 cut(s)	157
EaeI	YGGCCR	6 cut(s)	10, 42, 127, 209, 245, 381
EagI	CGGCCG	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	164, 245
EarI	CTCTTC	2 cut(s)	164, 245
Ecl136II	GAGCTC	1 cut(s)	120
EclXI	CGGCCG	1 cut(s)	127
Eco130I	CCWWGG	2 cut(s)	7, 378
Eco24I	GRGCYC	1 cut(s)	122
Eco52I	CGGCCG	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	120
EcoT14I	CCWWGG	2 cut(s)	7, 378
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	2 cut(s)	7, 378
FaiI	YATR	3 cut(s)	411, 446, 575
FauI	CCCGC	1 cut(s)	297
FokI	GGATG	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	122
FspBI	CTAG	1 cut(s)	491
HaeIII	GGCC	7 cut(s)	12, 44, 54, 129, 211, 247, 383
HapII	CCGG	7 cut(s)	45, 55, 64, 126, 184, 191, 212
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HinfI	GANTC	3 cut(s)	58, 194, 502
HpaII	CCGG	7 cut(s)	45, 55, 64, 126, 184, 191, 212
HphI	GGTGA	4 cut(s)	137, 298, 304, 532
Hpy166II	GTNNAC	2 cut(s)	98, 529
Hpy188I	TCNGA	4 cut(s)	117, 230, 439, 501
Hpy188III	TCNNGA	3 cut(s)	72, 452, 491
Hpy8I	GTNNAC	2 cut(s)	98, 529
Hpy99I	CGWCG	1 cut(s)	568
HpyAV	CCTTC	3 cut(s)	34, 44, 403
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 126, 513
HpyF3I	CTNAG	2 cut(s)	347, 436
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	125
LweI	GCATC	1 cut(s)	488
MaeI	CTAG	1 cut(s)	491
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	7 cut(s)	181, 233, 246, 249, 262, 268, 416
MhlI	GDGCHC	2 cut(s)	122, 191
MlsI	TGGCCA	1 cut(s)	12
MluCI	AATT	3 cut(s)	85, 111, 241
MluNI	TGGCCA	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	496
MnlI	CCTC	8 cut(s)	165, 208, 211, 224, 246, 267, 425, 459
Mox20I	TGGCCA	1 cut(s)	12
MscI	TGGCCA	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	12
MspI	CCGG	7 cut(s)	45, 55, 64, 126, 184, 191, 212
MspR9I	CCNGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	60, 126, 513
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	1 cut(s)	188
NmeAIII	GCCGAG	2 cut(s)	155, 409
NmuCI	GTSAC	1 cut(s)	157
NspV	TTCGAA	2 cut(s)	27, 462
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	58, 194
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
Psp124BI	GAGCTC	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	122
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	122, 191
SetI	ASST	9 cut(s)	26, 122, 181, 348, 364, 390, 451, 499, 518
SfaNI	GCATC	1 cut(s)	488
SfcI	CTRYAG	2 cut(s)	91, 409
SfuI	TTCGAA	2 cut(s)	27, 462
Sse9I	AATT	3 cut(s)	85, 111, 241
SsiI	CCGC	4 cut(s)	138, 290, 397, 546
SspMI	CTAG	1 cut(s)	491
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	2 cut(s)	7, 378
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	4 cut(s)	27, 71, 453, 462
TasI	AATT	3 cut(s)	85, 111, 241
TfiI	GAWTC	2 cut(s)	58, 194
TscAI	CASTG	4 cut(s)	100, 110, 406, 481
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	4 cut(s)	100, 110, 406, 481
XbaI	TCTAGA	1 cut(s)	490
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.