Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010969.1

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Reverse (-)

49938 .. 51275

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010969.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggaagccagaaaactgccctacacgccgccatcgccgtccacagtggcggcgccgccgccaccaccaccagctccaatggccaccaaatttttgcagcaccacatactcaacaatccaagcatttttcacaactacaacaagttccaattttaccttgaacttcatggctcaaaatcaagctcctccggccgaatcactgcaaaacaccaccacagatgtgacaaggaggaagaggcgagcttgccggtgcccgaattctgtcgtgggtcggccggagaaggaagaaatcagaggaggaagaatcgggccgaagaagagaaaagggtcggggaagaagagagagaaaactggggtatcctagcgagtccactccggaaatatgcgtcgaagtctacactcctagacgtagatcgtcatcccacgattgatactccaaaactcattcccaaacagctcgggaatctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.64

Weight (kDa)

9.45

Isoelectric Point (pI)

67.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	52, 250
AccI	GTMKAC	1 cut(s)	395
AccIII	TCCGGA	1 cut(s)	375
AciI	CCGC	4 cut(s)	29, 50, 56, 59
AcoI	YGGCCR	3 cut(s)	81, 190, 273
AcsI	RAATTY	2 cut(s)	89, 257
AcyI	GRCGYC	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	161
AleI	CACNNNNGTG	1 cut(s)	219
AluBI	AGCT	4 cut(s)	74, 183, 243, 457
AluI	AGCT	4 cut(s)	74, 183, 243, 457
Ama87I	CYCGRG	1 cut(s)	458
Aor13HI	TCCGGA	1 cut(s)	375
AoxI	GGCC	4 cut(s)	81, 190, 273, 309
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	2 cut(s)	89, 257
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	309
AvaI	CYCGRG	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	255
BaeI	ACNNNNGTAYC	2 cut(s)	340, 373
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	52, 250
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	1 cut(s)	40
BceAI	ACGGC	1 cut(s)	22
BciVI	GTATCC	1 cut(s)	368
BfaI	CTAG	2 cut(s)	362, 404
BfoI	RGCGCY	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	368
BisI	GCNGC	5 cut(s)	29, 51, 56, 59, 98
BlsI	GCNGC	5 cut(s)	30, 52, 57, 60, 99
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	54, 252
BmrI	ACTGGG	1 cut(s)	361
BmuI	ACTGGG	1 cut(s)	361
BsaBI	GATNNNNATC	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	375
Bse118I	RCCGGY	1 cut(s)	247
Bse1I	ACTGG	1 cut(s)	356
Bse8I	GATNNNNATC	1 cut(s)	417
BseAI	TCCGGA	1 cut(s)	375
BseGI	GGATG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	2 cut(s)	175, 310
BseSI	GKGCMC	1 cut(s)	255
BseX3I	CGGCCG	2 cut(s)	190, 273
BseXI	GCAGC	1 cut(s)	109
Bsh1285I	CGRYCG	2 cut(s)	193, 276
BshFI	GGCC	4 cut(s)	83, 192, 275, 311
BshNI	GGYRCC	2 cut(s)	52, 250
BsiEI	CGRYCG	2 cut(s)	193, 276
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	4 cut(s)	189, 248, 276, 376
BsnI	GGCC	4 cut(s)	83, 192, 275, 311
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp13I	TCCGGA	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	4 cut(s)	29, 50, 56, 59
BspANI	GGCC	4 cut(s)	83, 192, 275, 311
BspEI	TCCGGA	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	54, 252
BspT107I	GGYRCC	2 cut(s)	52, 250
BsrFI	RCCGGY	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	247
BssMI	GATC	1 cut(s)	412
BssNI	GRCGYC	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	3 cut(s)	228, 312, 333
BstACI	GRCGYC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	241, 245
BstF5I	GGATG	1 cut(s)	418
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	412
BstMCI	CGRYCG	2 cut(s)	193, 276
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 34, 80, 189
BstSLI	GKGCMC	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	109
BstZI	CGGCCG	2 cut(s)	190, 273
BsuI	GTATCC	1 cut(s)	368
BsuRI	GGCC	4 cut(s)	83, 192, 275, 311
BtgZI	GCGATG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	51, 198
Cac8I	GCNNGC	2 cut(s)	241, 245
CfoI	GCGC	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	309
CseI	GACGC	1 cut(s)	375
CviAII	CATG	1 cut(s)	167
DinI	GGCGCC	1 cut(s)	54
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
EaeI	YGGCCR	3 cut(s)	81, 190, 273
EagI	CGGCCG	2 cut(s)	190, 273
Eam1104I	CTCTTC	3 cut(s)	228, 312, 333
EarI	CTCTTC	3 cut(s)	228, 312, 333
EclXI	CGGCCG	2 cut(s)	190, 273
Eco52I	CGGCCG	2 cut(s)	190, 273
Eco88I	CYCGRG	1 cut(s)	458
EcoRI	GAATTC	1 cut(s)	257
EgeI	GGCGCC	1 cut(s)	54
EheI	GGCGCC	1 cut(s)	54
FaeI	CATG	1 cut(s)	170
FaiI	YATR	3 cut(s)	107, 168, 384
FatI	CATG	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	5 cut(s)	29, 51, 56, 59, 98
FokI	GGATG	1 cut(s)	405
Fsp4HI	GCNGC	5 cut(s)	29, 51, 56, 59, 98
FspBI	CTAG	2 cut(s)	362, 404
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	5 cut(s)	29, 51, 56, 59, 98
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	4 cut(s)	83, 192, 275, 311
HapII	CCGG	4 cut(s)	189, 248, 276, 376
HgaI	GACGC	1 cut(s)	375
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	4 cut(s)	195, 304, 367, 463
HpaII	CCGG	4 cut(s)	189, 248, 276, 376
Hpy166II	GTNNAC	3 cut(s)	42, 371, 396
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	2 cut(s)	376, 460
Hpy8I	GTNNAC	3 cut(s)	42, 371, 396
Hpy99I	CGWCG	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	2 cut(s)	97, 203
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 34, 80, 189
HpySE526I	ACGT	1 cut(s)	408
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	1 cut(s)	53
KasI	GGCGCC	1 cut(s)	52
Kpn2I	TCCGGA	1 cut(s)	375
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	2 cut(s)	79, 188
LpnPI	CCDG	7 cut(s)	22, 84, 202, 261, 289, 337, 389
Lsp1109I	GCAGC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	362, 404
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	7 cut(s)	245, 297, 313, 326, 329, 347, 350
MhlI	GDGCHC	1 cut(s)	255
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	3 cut(s)	89, 149, 257
MluNI	TGGCCA	1 cut(s)	83
Mly113I	GGCGCC	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	376
MnlI	CCTC	5 cut(s)	196, 223, 229, 288, 291
Mox20I	TGGCCA	1 cut(s)	83
MroI	TCCGGA	1 cut(s)	375
MscI	TGGCCA	1 cut(s)	83
MslI	CAYNNNNRTG	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	4 cut(s)	189, 248, 276, 376
MwoI	GCNNNNNNNGC	4 cut(s)	25, 34, 80, 189
NarI	GGCGCC	1 cut(s)	53
NdeII	GATC	1 cut(s)	412
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	2 cut(s)	54, 252
NmuCI	GTSAC	1 cut(s)	221
OliI	CACNNNNGTG	1 cut(s)	219
PfeI	GAWTC	3 cut(s)	195, 304, 463
PkrI	GCNGC	5 cut(s)	30, 52, 57, 60, 99
PleI	GAGTC	1 cut(s)	375
PluTI	GGCGCC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	54, 252
PspPI	GGNCC	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	219
SatI	GCNGC	5 cut(s)	29, 51, 56, 59, 98
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	1 cut(s)	309
SchI	GAGTC	1 cut(s)	376
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	6 cut(s)	76, 159, 185, 245, 411, 459
SfoI	GGCGCC	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	219
Sse9I	AATT	3 cut(s)	89, 149, 257
SsiI	CCGC	4 cut(s)	29, 50, 56, 59
SspDI	GGCGCC	1 cut(s)	52
SspMI	CTAG	2 cut(s)	362, 404
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	389
TasI	AATT	3 cut(s)	89, 149, 257
TauI	GCSGC	4 cut(s)	31, 53, 58, 61
TfiI	GAWTC	3 cut(s)	195, 304, 463
TscAI	CASTG	2 cut(s)	51, 205
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	51, 205
XapI	RAATTY	2 cut(s)	89, 257
XmiI	GTMKAC	1 cut(s)	395
XspI	CTAG	2 cut(s)	362, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.