Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Forward (+)

33399691 .. 33400791

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATCCTTGGCGAAAACCGCACCTTCGACGCCCGTTTGGTGGCCGGAGAAGGTCGGAATCGCAGGAAATCGACGAAACTTCCAAATTGCTACAGTGAGCTTCACGGCTCAAATTCGAGCTCCTCCGGCCAAGTCATCGAAAAACACCACCTGCAGTGTGACAAGGAGGAGGAGGCGAGCTTGCCGTGCCCGGATTCCGTCGTGGGGTGGCGGAGGAGGAAGAAATCGGTGGAGGAAAAATCGGGCCGAAGAGGAGGAAAGGATCGGGGGAGAGGAGACAGAAAACTTGGTAAACGCTACGAAGAGCAAGGGAAACGCTACGAAGAGGCGGGTAAACGCCTCGAAGGGCAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.43

Weight (kDa)

9.75

Isoelectric Point (pI)

66.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	159
Acc36I	ACCTGC	1 cut(s)	159
AciI	CCGC	3 cut(s)	19, 211, 329
AclWI	GGATC	1 cut(s)	270
AcoI	YGGCCR	2 cut(s)	42, 127
AcsI	RAATTY	1 cut(s)	112
AcyI	GRCGYC	1 cut(s)	30
AfiI	CCNNNNNNNGG	2 cut(s)	40, 204
AluBI	AGCT	3 cut(s)	100, 120, 180
AluI	AGCT	3 cut(s)	100, 120, 180
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	1 cut(s)	270
AoxI	GGCC	3 cut(s)	42, 127, 244
ApoI	RAATTY	1 cut(s)	112
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	122
BceAI	ACGGC	2 cut(s)	121, 169
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	270
BfmI	CTRYAG	2 cut(s)	91, 152
BfuAI	ACCTGC	1 cut(s)	159
Bme1390I	CCNGG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	191
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 204
BseDI	CCNNGG	1 cut(s)	7
BseLI	CCNNNNNNNGG	2 cut(s)	40, 204
BseRI	GAGGAG	6 cut(s)	112, 182, 185, 229, 267, 288
BseSI	GKGCMC	1 cut(s)	191
BshFI	GGCC	3 cut(s)	44, 129, 246
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	45, 126, 191
BslI	CCNNNNNNNGG	2 cut(s)	40, 204
BsmAI	GTCTC	1 cut(s)	270
BsnI	GGCC	3 cut(s)	44, 129, 246
Bsp1286I	GDGCHC	2 cut(s)	122, 191
Bsp143I	GATC	2 cut(s)	3, 262
BspACI	CCGC	3 cut(s)	19, 211, 329
BspANI	GGCC	3 cut(s)	44, 129, 246
BspMAI	CTGCAG	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	270
BspQI	GCTCTTC	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	2 cut(s)	3, 262
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	3 cut(s)	244, 297, 318
BstACI	GRCGYC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	178, 182
BstKTI	GATC	2 cut(s)	6, 265
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	2 cut(s)	3, 262
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 126, 186
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	2 cut(s)	91, 152
BstSLI	GKGCMC	1 cut(s)	191
BsuRI	GGCC	3 cut(s)	44, 129, 246
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	100, 161
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	178, 182
Cfr13I	GGNCC	1 cut(s)	244
CseI	GACGC	1 cut(s)	38
CviJI	RGCY	7 cut(s)	44, 100, 108, 120, 129, 180, 246
CviKI_1	RGCY	7 cut(s)	44, 100, 108, 120, 129, 180, 246
DpnI	GATC	2 cut(s)	5, 264
DpnII	GATC	2 cut(s)	3, 262
EaeI	YGGCCR	2 cut(s)	42, 127
Eam1104I	CTCTTC	3 cut(s)	244, 297, 318
EarI	CTCTTC	3 cut(s)	244, 297, 318
EciI	GGCGGA	1 cut(s)	226
Ecl136II	GAGCTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	7
FauI	CCCGC	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	122
HaeIII	GGCC	3 cut(s)	44, 129, 246
HapII	CCGG	3 cut(s)	45, 126, 191
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	30
HinfI	GANTC	2 cut(s)	58, 194
HpaII	CCGG	3 cut(s)	45, 126, 191
Hpy166II	GTNNAC	2 cut(s)	293, 335
Hpy188I	TCNGA	1 cut(s)	57
Hpy8I	GTNNAC	2 cut(s)	293, 335
Hpy99I	CGWCG	3 cut(s)	32, 76, 203
HpyAV	CCTTC	3 cut(s)	34, 44, 338
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 126, 186
Hsp92I	GRCGYC	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	3, 262
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	5 cut(s)	49, 58, 139, 164, 204
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	2 cut(s)	5, 264
MboI	GATC	2 cut(s)	3, 262
MboII	GAAGA	4 cut(s)	232, 261, 314, 335
MhlI	GDGCHC	2 cut(s)	122, 191
MluCI	AATT	2 cut(s)	85, 112
MmeI	TCCRAC	1 cut(s)	35
MspI	CCGG	3 cut(s)	45, 126, 191
MspR9I	CCNGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	18, 126, 186
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	2 cut(s)	3, 262
NmuCI	GTSAC	1 cut(s)	158
PaqCI	CACCTGC	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	58, 194
Psp124BI	GAGCTC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	297
Sau3AI	GATC	2 cut(s)	3, 262
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	122, 191
SetI	ASST	6 cut(s)	26, 55, 102, 122, 153, 182
SfcI	CTRYAG	2 cut(s)	91, 152
Sse9I	AATT	2 cut(s)	85, 112
SsiI	CCGC	3 cut(s)	19, 211, 329
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	5 cut(s)	27, 71, 116, 138, 342
TasI	AATT	2 cut(s)	85, 112
TfiI	GAWTC	2 cut(s)	58, 194
TscAI	CASTG	2 cut(s)	100, 161
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	2 cut(s)	100, 161
XapI	RAATTY	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.