Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010065.1

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Reverse (-)

48000 .. 48311

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010065.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgatcattggcaaaaaccgaaccttcgacaccggtttggtggacagagatagccggaatcgccgaaaatcgacgaaagttctaatcggctacagtgaacttcacggctcaaaattaagctcctccagccgaatcactgcaaaacaccaccacagatgtgacaaggaggaagaggcgagcttgctggtgcttggattccttcgtgggtcggccagagaaggaagaaatcggaagaggaagaatcggaccgaagaggagaaaaggatcggggaagaagagagagaaaaatgggtaggtttccaaaaatggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

12.1

Weight (kDa)

10.27

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	210
AgeI	ACCGGT	1 cut(s)	32
AleI	CACNNNNGTG	1 cut(s)	156
AluBI	AGCT	2 cut(s)	120, 180
AluI	AGCT	2 cut(s)	120, 180
AlwI	GGATC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	210
AsiGI	ACCGGT	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	246
BceAI	ACGGC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	3
BfmI	CTRYAG	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	32
Bse118I	RCCGGY	1 cut(s)	32
BseRI	GAGGAG	2 cut(s)	112, 269
BshFI	GGCC	1 cut(s)	212
BshTI	ACCGGT	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	33, 55
BsnI	GGCC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	3, 264
BspANI	GGCC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssMI	GATC	2 cut(s)	3, 264
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	4 cut(s)	165, 227, 246, 270
BstC8I	GCNNGC	2 cut(s)	178, 182
BstKTI	GATC	2 cut(s)	6, 267
BstMBI	GATC	2 cut(s)	3, 264
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 126
BstSFI	CTRYAG	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	212
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	100, 135
Cac8I	GCNNGC	2 cut(s)	178, 182
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	246
CpoI	CGGWCCG	1 cut(s)	246
CspAI	ACCGGT	1 cut(s)	32
CspI	CGGWCCG	1 cut(s)	246
CviJI	RGCY	7 cut(s)	54, 90, 108, 120, 129, 180, 212
CviKI_1	RGCY	7 cut(s)	54, 90, 108, 120, 129, 180, 212
DpnI	GATC	2 cut(s)	5, 266
DpnII	GATC	2 cut(s)	3, 264
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	4 cut(s)	165, 227, 246, 270
EarI	CTCTTC	4 cut(s)	165, 227, 246, 270
Eco47I	GGWCC	1 cut(s)	246
FbaI	TGATCA	1 cut(s)	3
GsuI	CTGGAG	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	212
HapII	CCGG	2 cut(s)	33, 55
HinfI	GANTC	4 cut(s)	58, 132, 195, 241
HpaII	CCGG	2 cut(s)	33, 55
Hpy166II	GTNNAC	2 cut(s)	43, 98
Hpy188I	TCNGA	2 cut(s)	231, 246
Hpy8I	GTNNAC	2 cut(s)	43, 98
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	3 cut(s)	34, 209, 212
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 126
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 264
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	5 cut(s)	46, 68, 139, 170, 226
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	2 cut(s)	5, 266
MboI	GATC	2 cut(s)	3, 264
MboII	GAAGA	7 cut(s)	182, 234, 244, 250, 263, 284, 287
MluCI	AATT	1 cut(s)	113
MnlI	CCTC	5 cut(s)	133, 160, 166, 228, 247
MseI	TTAA	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	156
MspI	CCGG	2 cut(s)	33, 55
MwoI	GCNNNNNNNGC	2 cut(s)	60, 126
NdeII	GATC	2 cut(s)	3, 264
NmuCI	GTSAC	1 cut(s)	158
OliI	CACNNNNGTG	1 cut(s)	156
PfeI	GAWTC	4 cut(s)	58, 132, 195, 241
PinAI	ACCGGT	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	156
Rsr2I	CGGWCCG	1 cut(s)	246
RsrII	CGGWCCG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	116
Sau3AI	GATC	2 cut(s)	3, 264
Sau96I	GGNCC	1 cut(s)	246
SetI	ASST	4 cut(s)	26, 122, 182, 298
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	156
Sse9I	AATT	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	27, 71
TaqII	GACCGA	1 cut(s)	263
TasI	AATT	1 cut(s)	113
TfiI	GAWTC	4 cut(s)	58, 132, 195, 241
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	2 cut(s)	100, 142
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
TspRI	CASTG	2 cut(s)	100, 142
VpaK11BI	GGWCC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.