Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Forward (+)

46809071 .. 46811454

Gene Structure 2384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG331400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGACTCGTGGTTTTGGATGCGTGCAGTGCGGAACGCGCAGCAACCCCTGCCGGTGCAAGGTGGTGGGCCCTACCTTGGGGCTCCTGGCCTTCGCCGCGGCGGCGATCGCGGAATGGCCTGTGGGGGCTGTTGTCTACTTGTTCCGCCACACGAAGGGTCGCCGAATCATGGGTCATCCGTCCACTGTTGTTTACCCCAAATCTTTTACGATTGGAGAGTTACTGAAATTGTTTCCTGAATTTCTCTACATTAAGATCGAGCAACCAATGAGAATCCGGTCGGACGAAGATTTTTACCCTCTTAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.58

Weight (kDa)

9.46

Isoelectric Point (pI)

29.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	3 cut(s)	37, 98, 110
AciI	CCGC	6 cut(s)	30, 96, 98, 101, 110, 145
AcsI	RAATTY	1 cut(s)	239
AfiI	CCNNNNNNNGG	5 cut(s)	58, 76, 77, 154, 169
AjnI	CCWGG	1 cut(s)	84
AoxI	GGCC	3 cut(s)	67, 87, 116
ApaI	GGGCCC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	39
ApoI	RAATTY	1 cut(s)	239
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
AsiSI	GCGATCGC	1 cut(s)	108
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	67, 68
BaeGI	GKGCMC	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	71, 84
BauI	CACGAG	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	86
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	4 cut(s)	40, 96, 99, 102
BlsI	GCNGC	4 cut(s)	41, 97, 100, 103
Bme1390I	CCNGG	1 cut(s)	86
BmgT120I	GGNCC	2 cut(s)	67, 68
BmiI	GGNNCC	2 cut(s)	69, 83
BmrFI	CCNGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	75, 96
BsaWI	WCCGGW	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 76, 77, 154, 169
Bse118I	RCCGGY	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	75, 96
BseGI	GGATG	2 cut(s)	23, 175
BseLI	CCNNNNNNNGG	5 cut(s)	58, 76, 77, 154, 169
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	44
Bsh1236I	CGCG	3 cut(s)	37, 98, 110
Bsh1285I	CGRYCG	2 cut(s)	108, 281
BshFI	GGCC	3 cut(s)	69, 89, 118
BsiEI	CGRYCG	2 cut(s)	108, 281
BsiSI	CCGG	2 cut(s)	52, 277
BslI	CCNNNNNNNGG	5 cut(s)	58, 76, 77, 154, 169
BsnI	GGCC	3 cut(s)	69, 89, 118
Bsp120I	GGGCCC	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	71, 84
Bsp143I	GATC	2 cut(s)	105, 255
BspACI	CCGC	6 cut(s)	30, 96, 98, 101, 110, 145
BspANI	GGCC	3 cut(s)	69, 89, 118
BspFNI	CGCG	3 cut(s)	37, 98, 110
BspLI	GGNNCC	2 cut(s)	69, 83
BsrFI	RCCGGY	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	75, 96
BssMI	GATC	2 cut(s)	105, 255
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	2 cut(s)	23, 175
BstFNI	CGCG	3 cut(s)	37, 98, 110
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	2 cut(s)	108, 258
BstMBI	GATC	2 cut(s)	105, 255
BstMCI	CGRYCG	2 cut(s)	108, 281
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 36, 48, 95, 101, 107
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	71
BstUI	CGCG	3 cut(s)	37, 98, 110
BstV1I	GCAGC	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	69, 89, 118
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	23, 175
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	32, 183
Cac8I	GCNNGC	1 cut(s)	23
CfoI	GCGC	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	67, 68
Cfr42I	CCGCGG	1 cut(s)	99
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	5 cut(s)	69, 82, 89, 118, 128
CviKI_1	RGCY	5 cut(s)	69, 82, 89, 118, 128
DpnI	GATC	2 cut(s)	107, 257
DpnII	GATC	2 cut(s)	105, 255
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	71, 84
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	71, 84
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	172
FaiI	YATR	1 cut(s)	170
FatI	CATG	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	40, 96, 99, 102
FokI	GGATG	2 cut(s)	30, 162
FriOI	GRGCYC	2 cut(s)	71, 84
Fsp4HI	GCNGC	4 cut(s)	40, 96, 99, 102
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	4 cut(s)	40, 96, 99, 102
HaeIII	GGCC	3 cut(s)	69, 89, 118
HapII	CCGG	2 cut(s)	52, 277
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	3 cut(s)	4, 165, 273
HpaII	CCGG	2 cut(s)	52, 277
Hpy166II	GTNNAC	3 cut(s)	136, 183, 193
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	3 cut(s)	136, 183, 193
HpyAV	CCTTC	2 cut(s)	100, 148
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	25, 57
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 36, 48, 95, 101, 107
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	37
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	105, 255
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	7 cut(s)	61, 65, 71, 98, 132, 249, 290
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	2 cut(s)	107, 257
MboI	GATC	2 cut(s)	105, 255
MboII	GAAGA	1 cut(s)	299
MhlI	GDGCHC	2 cut(s)	71, 84
MluCI	AATT	2 cut(s)	227, 239
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	1 cut(s)	309
MseI	TTAA	2 cut(s)	252, 303
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	52, 277
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	3 cut(s)	37, 98, 110
MwoI	GCNNNNNNNGC	6 cut(s)	27, 36, 48, 95, 101, 107
NdeII	GATC	2 cut(s)	105, 255
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	2 cut(s)	69, 83
PfeI	GAWTC	2 cut(s)	165, 273
PkrI	GCNGC	4 cut(s)	41, 97, 100, 103
Ple19I	CGATCG	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	69, 83
PspOMI	GGGCCC	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	67, 68
PvuI	CGATCG	1 cut(s)	108
RgaI	GCGATCGC	1 cut(s)	108
SacII	CCGCGG	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	252, 303
SatI	GCNGC	4 cut(s)	40, 96, 99, 102
Sau3AI	GATC	2 cut(s)	105, 255
Sau96I	GGNCC	2 cut(s)	67, 68
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	2 cut(s)	71, 84
SetI	ASST	2 cut(s)	63, 77
SfaAI	GCGATCGC	1 cut(s)	108
SfaNI	GCATC	1 cut(s)	8
Sfr303I	CCGCGG	1 cut(s)	99
SgfI	GCGATCGC	1 cut(s)	108
SgrBI	CCGCGG	1 cut(s)	99
Sse9I	AATT	2 cut(s)	227, 239
SsiI	CCGC	6 cut(s)	30, 96, 98, 101, 110, 145
StyD4I	CCNGG	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	258
TasI	AATT	2 cut(s)	227, 239
TauI	GCSGC	3 cut(s)	98, 101, 104
TfiI	GAWTC	2 cut(s)	165, 273
Tru1I	TTAA	2 cut(s)	252, 303
Tru9I	TTAA	2 cut(s)	252, 303
TscAI	CASTG	2 cut(s)	32, 190
TseI	GCWGC	1 cut(s)	39
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	2 cut(s)	32, 190
XapI	RAATTY	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.