Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Reverse (-)

33462874 .. 33463101

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1261500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGCTTGTGGAATTCCAATCTGCGTGCAGTGTGGGACTAGGAGCAACCCGTGCAGGTGCAAGGTGGTGGGGCCAACCCTGGGGTTTTTGGCATTTGTTGGAGCTGCCATTGTGGAGTGGCCTGTTGGGGCTCTTGTTTACTGCTTCAGGCACATGAAGGGTCGCAGAATCATGGCTCATCCGGCAACCGTTGTTTACCCATCGGTCAATAGGGCCATTCCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

76

Amino Acids

8.07

Weight (kDa)

9.61

Isoelectric Point (pI)

23.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	45
Acc36I	ACCTGC	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
AoxI	GGCC	3 cut(s)	71, 119, 213
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	71, 213
BanII	GRGCYC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	39
BfuAI	ACCTGC	1 cut(s)	45
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	71, 213
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	78, 79
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	2 cut(s)	78, 79
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	91
BsgI	GTGCAG	2 cut(s)	47, 73
BshFI	GGCC	3 cut(s)	73, 121, 215
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	73, 121, 215
Bsp1286I	GDGCHC	1 cut(s)	133
BspANI	GGCC	3 cut(s)	73, 121, 215
BspLI	GGNNCC	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	78, 79
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	51, 182
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	73, 121, 215
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	35
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	71, 213
CviAII	CATG	2 cut(s)	154, 172
CviJI	RGCY	7 cut(s)	5, 73, 104, 121, 131, 176, 215
CviKI_1	RGCY	7 cut(s)	5, 73, 104, 121, 131, 176, 215
Eco24I	GRGCYC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	133
FaeI	CATG	2 cut(s)	157, 175
FaiI	YATR	2 cut(s)	155, 173
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	153, 171
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	73, 121, 215
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	2 cut(s)	157, 175
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	139, 196
Hpy8I	GTNNAC	2 cut(s)	139, 196
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	28, 54, 60
HpyF10VI	GCNNNNNNNGC	2 cut(s)	51, 182
Hsp92II	CATG	2 cut(s)	157, 175
LmnI	GCTCC	2 cut(s)	42, 101
LpnPI	CCDG	6 cut(s)	40, 65, 92, 133, 135, 195
Lsp1109I	GCAGC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	79
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	51, 182
NlaIII	CATG	2 cut(s)	157, 175
NlaIV	GGNNCC	1 cut(s)	72
PaqCI	CACCTGC	1 cut(s)	45
PasI	CCCWGGG	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	71, 213
SatI	GCNGC	1 cut(s)	105
Sau96I	GGNCC	2 cut(s)	71, 213
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	133
SetI	ASST	3 cut(s)	59, 66, 106
Sse9I	AATT	1 cut(s)	12
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	190
TaqII	GACCGA	1 cut(s)	193
TasI	AATT	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	168
TscAI	CASTG	1 cut(s)	35
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	35
XapI	RAATTY	1 cut(s)	12
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.