Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001669.1

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Forward (+)

226379 .. 228337

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001669.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgatccttggcaaaaaccgaaccttcgaagccagtttggtggccggagaaggccggaatcgccggaaatcgagaaaactcccaaactgctacagtgaactccacggctcagttccgagctccaccagccgagccaccgcaaatcaccaccacagcgtgacaaggatgaagaggagagcttgccggtgcccggattccatcgtggggtggccggaggaggaagaaatcggaggaagaagaaattggccgaagaggaagaaagggtcaggggagaggagagagaaaaggccgccaagtaaatccaccaaagaacaggcttcaccatcacctatcgccaccaccccactcaacgcccaataccttcgttctccccaacctaacagcaatatccacttggccgagcttcccttccgcagtgaagactatggcctccccccaaacacggagaactcagagaatatacctctcgacttattcgaaaccctactcactgcatcgcaacatctagaagctctgactcgcccaaaaagctctcgtactgtcaatgttgctatcaccaccgcaggggcttatggaacgacggtgtttatgtccttgtggcaacattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

202

Amino Acids

22.6

Weight (kDa)

10.06

Isoelectric Point (pI)

78.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	186
AciI	CCGC	4 cut(s)	138, 290, 412, 561
AcoI	YGGCCR	4 cut(s)	42, 209, 245, 396
AdeI	CACNNNGTG	1 cut(s)	157
AfaI	GTAC	1 cut(s)	538
AfiI	CCNNNNNNNGG	4 cut(s)	190, 204, 442, 564
AjuI	GAANNNNNNNTTGG	2 cut(s)	226, 258
AluBI	AGCT	5 cut(s)	120, 179, 403, 512, 531
AluI	AGCT	5 cut(s)	120, 179, 403, 512, 531
Alw21I	GWGCWC	1 cut(s)	122
AoxI	GGCC	7 cut(s)	42, 52, 209, 245, 287, 396, 427
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	4 cut(s)	137, 312, 318, 547
AsuII	TTCGAA	2 cut(s)	27, 477
BaeGI	GKGCMC	1 cut(s)	191
BanI	GGYRCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	122
BccI	CCATC	2 cut(s)	206, 331
BceAI	ACGGC	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	191
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
Bme1390I	CCNGG	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	503
BpiI	GAAGAC	1 cut(s)	426
Bpu14I	TTCGAA	2 cut(s)	27, 477
BpuMI	CCSGG	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	7, 103
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 204, 442, 564
Bse118I	RCCGGY	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	7, 103
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	4 cut(s)	190, 204, 442, 564
BseMII	CTCAG	2 cut(s)	123, 465
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	3 cut(s)	187, 230, 289
BseSI	GKGCMC	1 cut(s)	191
BshFI	GGCC	7 cut(s)	44, 54, 211, 247, 289, 398, 429
BshNI	GGYRCC	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	6 cut(s)	45, 55, 64, 184, 191, 212
BslI	CCNNNNNNNGG	4 cut(s)	190, 204, 442, 564
BsnI	GGCC	7 cut(s)	44, 54, 211, 247, 289, 398, 429
Bsp119I	TTCGAA	2 cut(s)	27, 477
Bsp1286I	GDGCHC	2 cut(s)	122, 191
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	4 cut(s)	138, 290, 412, 561
BspANI	GGCC	7 cut(s)	44, 54, 211, 247, 289, 398, 429
BspCNI	CTCAG	2 cut(s)	122, 464
BspLI	GGNNCC	1 cut(s)	188
BspT104I	TTCGAA	2 cut(s)	27, 477
BspT107I	GGYRCC	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	7, 103
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	7
Bst4CI	ACNGT	3 cut(s)	95, 541, 583
Bst6I	CTCTTC	2 cut(s)	164, 245
BstBI	TTCGAA	2 cut(s)	27, 477
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	2 cut(s)	109, 451
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	171
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 126, 528
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	191
BstV2I	GAAGAC	1 cut(s)	426
BstXI	CCANNNNNNTGG	1 cut(s)	40
BsuRI	GGCC	7 cut(s)	44, 54, 211, 247, 289, 398, 429
BtgI	CCRYGG	1 cut(s)	103
BtgZI	GCGATG	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	171
BtsI	GCAGTG	2 cut(s)	421, 489
BtsIMutI	CAGTG	3 cut(s)	100, 421, 489
Cac8I	GCNNGC	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	537
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	2 cut(s)	109, 451
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DraIII	CACNNNGTG	1 cut(s)	157
EaeI	YGGCCR	4 cut(s)	42, 209, 245, 396
Eam1104I	CTCTTC	2 cut(s)	164, 245
EarI	CTCTTC	2 cut(s)	164, 245
Ecl136II	GAGCTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	120
EcoICRI	GAGCTC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	7
FaiI	YATR	4 cut(s)	426, 461, 573, 590
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	1 cut(s)	178
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	290
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	1 cut(s)	290
HaeIII	GGCC	7 cut(s)	44, 54, 211, 247, 289, 398, 429
HapII	CCGG	6 cut(s)	45, 55, 64, 184, 191, 212
HinfI	GANTC	3 cut(s)	58, 194, 517
HpaII	CCGG	6 cut(s)	45, 55, 64, 184, 191, 212
HphI	GGTGA	4 cut(s)	137, 312, 318, 547
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	4 cut(s)	117, 230, 454, 516
Hpy188III	TCNNGA	3 cut(s)	72, 467, 506
Hpy8I	GTNNAC	1 cut(s)	98
Hpy99I	CGWCG	1 cut(s)	583
HpyAV	CCTTC	4 cut(s)	34, 44, 371, 418
HpyCH4III	ACNGT	3 cut(s)	95, 541, 583
HpyCH4V	TGCA	1 cut(s)	494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 126, 528
HpyF3I	CTNAG	2 cut(s)	109, 451
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	125
LweI	GCATC	1 cut(s)	503
MaeI	CTAG	1 cut(s)	506
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	7 cut(s)	181, 233, 246, 249, 262, 268, 431
MhlI	GDGCHC	2 cut(s)	122, 191
MluCI	AATT	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	511
MnlI	CCTC	8 cut(s)	165, 208, 211, 224, 246, 267, 440, 474
MspI	CCGG	6 cut(s)	45, 55, 64, 184, 191, 212
MspR9I	CCNGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	60, 126, 528
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	1 cut(s)	188
NmeAIII	GCCGAG	2 cut(s)	155, 424
NmuCI	GTSAC	1 cut(s)	157
NspV	TTCGAA	2 cut(s)	27, 477
PcsI	WCGNNNNNNNCGW	1 cut(s)	474
PfeI	GAWTC	2 cut(s)	58, 194
PkrI	GCNGC	1 cut(s)	291
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
Psp124BI	GAGCTC	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	188
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
SacI	GAGCTC	1 cut(s)	122
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	122, 191
SfaNI	GCATC	1 cut(s)	503
SfcI	CTRYAG	1 cut(s)	91
SfuI	TTCGAA	2 cut(s)	27, 477
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	4 cut(s)	138, 290, 412, 561
SspMI	CTAG	1 cut(s)	506
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	3 cut(s)	95, 541, 583
TaqI	TCGA	4 cut(s)	27, 71, 468, 477
TasI	AATT	1 cut(s)	241
TauI	GCSGC	1 cut(s)	292
TfiI	GAWTC	2 cut(s)	58, 194
TscAI	CASTG	3 cut(s)	100, 421, 496
TseFI	GTSAC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	3 cut(s)	100, 421, 496
XbaI	TCTAGA	1 cut(s)	505
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.