Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039881.1

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Reverse (-)

3774 .. 4377

Gene Structure 604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039881.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgtgcctccatgcgccacctacagtagccccacgcgccggtggccaccacctccgatggccaccaaattttggctgcagcaatatcacaacagacccaacaagtttcccaactatagcacattccaattttacctttaactgctcgaaattggccgaaggtcggaatcgccggaaatcgacgaaacttccaaattgctacagtgtgcttcacggctcaaatccgagctcctccggtcgagtcatcgaaaaacaccactgcaggtgtgacaaggaggaggaagcaaacttaccggtgcccggattctgtcgtggggtggccggaggaggaagaaatcagtggaggaaaaatcgggccgaagaggaggaaatgatcgggggagaggagagagaaaactcggtaagtttccgaaagtggaaacttaccacagttgtttgcaccttttatagaaacttactatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.17

Weight (kDa)

9.3

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	295
AccB7I	CCANNNNNTGG	1 cut(s)	71
AccII	CGCG	1 cut(s)	36
AcoI	YGGCCR	4 cut(s)	43, 59, 153, 318
AcsI	RAATTY	1 cut(s)	67
AfiI	CCNNNNNNNGG	4 cut(s)	38, 71, 162, 299
AgeI	ACCGGT	1 cut(s)	292
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
Alw21I	GWGCWC	1 cut(s)	230
AoxI	GGCC	5 cut(s)	43, 59, 153, 318, 354
ApeKI	GCWGC	2 cut(s)	75, 78
ApoI	RAATTY	1 cut(s)	67
AsiGI	ACCGGT	1 cut(s)	292
AspLEI	GCGC	2 cut(s)	16, 38
AspS9I	GGNCC	1 cut(s)	354
AsuC2I	CCSGG	1 cut(s)	300
BaeGI	GKGCMC	1 cut(s)	300
BalI	TGGCCA	2 cut(s)	45, 61
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	230
BarI	GAAGNNNNNNTAC	2 cut(s)	273, 305
Bbv12I	GWGCWC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	62, 90
BccI	CCATC	1 cut(s)	51
BceAI	ACGGC	1 cut(s)	229
BcnI	CCSGG	1 cut(s)	300
BfmI	CTRYAG	5 cut(s)	21, 76, 114, 199, 259
BfuAI	ACCTGC	1 cut(s)	252
BisI	GCNGC	2 cut(s)	76, 79
BlsI	GCNGC	2 cut(s)	77, 80
Bme1390I	CCNGG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	300
BsaWI	WCCGGW	2 cut(s)	233, 292
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 71, 162, 299
Bse118I	RCCGGY	2 cut(s)	38, 292
BseLI	CCNNNNNNNGG	4 cut(s)	38, 71, 162, 299
BseRI	GAGGAG	5 cut(s)	220, 290, 339, 377, 398
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	62, 90
Bsh1236I	CGCG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	5 cut(s)	45, 61, 155, 320, 356
BshNI	GGYRCC	1 cut(s)	295
BshTI	ACCGGT	1 cut(s)	292
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	230
BsiSI	CCGG	6 cut(s)	39, 172, 234, 293, 300, 321
BslI	CCNNNNNNNGG	4 cut(s)	38, 71, 162, 299
BsnI	GGCC	5 cut(s)	45, 61, 155, 320, 356
Bsp1286I	GDGCHC	2 cut(s)	230, 300
Bsp143I	GATC	1 cut(s)	372
BspANI	GGCC	5 cut(s)	45, 61, 155, 320, 356
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	297
BspMAI	CTGCAG	2 cut(s)	80, 263
BspMI	ACCTGC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	295
BsrFI	RCCGGY	2 cut(s)	38, 292
BssAI	RCCGGY	2 cut(s)	38, 292
BssMI	GATC	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	25, 203, 430
Bst6I	CTCTTC	1 cut(s)	354
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	16, 38
BstKTI	GATC	1 cut(s)	375
BstMBI	GATC	1 cut(s)	372
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 42
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	5 cut(s)	21, 76, 114, 199, 259
BstSLI	GKGCMC	1 cut(s)	300
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	62, 90
BsuRI	GGCC	5 cut(s)	45, 61, 155, 320, 356
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	3 cut(s)	208, 256, 344
BveI	ACCTGC	1 cut(s)	252
CfoI	GCGC	2 cut(s)	16, 38
Cfr10I	RCCGGY	2 cut(s)	38, 292
Cfr13I	GGNCC	1 cut(s)	354
CspAI	ACCGGT	1 cut(s)	292
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	9 cut(s)	29, 45, 61, 75, 155, 216, 228, 320, 356
CviKI_1	RGCY	9 cut(s)	29, 45, 61, 75, 155, 216, 228, 320, 356
DpnI	GATC	1 cut(s)	374
DpnII	GATC	1 cut(s)	372
EaeI	YGGCCR	4 cut(s)	43, 59, 153, 318
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	230
Eco53kI	GAGCTC	1 cut(s)	228
EcoICRI	GAGCTC	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	230
FaeI	CATG	1 cut(s)	14
FaiI	YATR	4 cut(s)	12, 116, 447, 460
FatI	CATG	1 cut(s)	10
Fnu4HI	GCNGC	2 cut(s)	76, 79
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	2 cut(s)	76, 79
GlaI	GCGC	2 cut(s)	15, 37
GluI	GCNGC	2 cut(s)	76, 79
HaeIII	GGCC	5 cut(s)	45, 61, 155, 320, 356
HapII	CCGG	6 cut(s)	39, 172, 234, 293, 300, 321
HhaI	GCGC	2 cut(s)	16, 38
Hin1II	CATG	1 cut(s)	14
Hin6I	GCGC	2 cut(s)	14, 36
HinP1I	GCGC	2 cut(s)	14, 36
HinfI	GANTC	3 cut(s)	166, 240, 303
HpaII	CCGG	6 cut(s)	39, 172, 234, 293, 300, 321
Hpy188I	TCNGA	4 cut(s)	56, 165, 225, 410
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	3 cut(s)	25, 203, 430
HpyCH4V	TGCA	3 cut(s)	78, 261, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 42
Hsp92II	CATG	1 cut(s)	14
HspAI	GCGC	2 cut(s)	14, 36
Kzo9I	GATC	1 cut(s)	372
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	7 cut(s)	52, 185, 247, 247, 306, 313, 334
Lsp1109I	GCAGC	2 cut(s)	62, 90
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	1 cut(s)	374
MboI	GATC	1 cut(s)	372
MboII	GAAGA	2 cut(s)	342, 371
MhlI	GDGCHC	2 cut(s)	230, 300
MlsI	TGGCCA	2 cut(s)	45, 61
MluCI	AATT	4 cut(s)	67, 127, 149, 193
MluNI	TGGCCA	2 cut(s)	45, 61
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	143
Mox20I	TGGCCA	2 cut(s)	45, 61
MscI	TGGCCA	2 cut(s)	45, 61
MseI	TTAA	1 cut(s)	138
Msp20I	TGGCCA	2 cut(s)	45, 61
MspI	CCGG	6 cut(s)	39, 172, 234, 293, 300, 321
MspR9I	CCNGG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	35, 42
NciI	CCSGG	1 cut(s)	300
NdeII	GATC	1 cut(s)	372
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	266
PaqCI	CACCTGC	1 cut(s)	252
PfeI	GAWTC	2 cut(s)	166, 303
PflMI	CCANNNNNTGG	1 cut(s)	71
PinAI	ACCGGT	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	77, 80
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	354
PstI	CTGCAG	2 cut(s)	80, 263
SacI	GAGCTC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	2 cut(s)	76, 79
Sau3AI	GATC	1 cut(s)	372
Sau96I	GGNCC	1 cut(s)	354
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	2 cut(s)	230, 300
SetI	ASST	7 cut(s)	22, 54, 137, 163, 230, 266, 443
SfcI	CTRYAG	5 cut(s)	21, 76, 114, 199, 259
SgrAI	CRCCGGYG	1 cut(s)	38
Sse9I	AATT	4 cut(s)	67, 127, 149, 193
SstI	GAGCTC	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	3 cut(s)	25, 203, 430
TaqI	TCGA	4 cut(s)	146, 179, 238, 246
TasI	AATT	4 cut(s)	67, 127, 149, 193
TfiI	GAWTC	2 cut(s)	166, 303
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	3 cut(s)	208, 263, 344
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	2 cut(s)	75, 78
Tsp45I	GTSAC	1 cut(s)	266
TspRI	CASTG	3 cut(s)	208, 263, 344
Van91I	CCANNNNNTGG	1 cut(s)	71
XapI	RAATTY	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.