Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000152

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Reverse (-)

206254 .. 209769

Gene Structure 3516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_152G00434700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGATCAATGGCAAAAACCGAACCTTCGACGCCAATTTGGCGGCGGAGAAGGCCGGAATCTCCGGAAATCGACAAAACTTCGTTCGGCTACGTAACCTTCGTGACTCAATTCCGAGCTCCTCCGGCCGAGCCACCGCAAAACACCACCCCCGGCGTGACAAGGAAGAGGGCGAGTCCGCCGGTGCCGGATTCCGTCATGGGGTGGTCGGAGGAGGAAGAAATCGAAGGAGAAGAATCCGGCCGAAGAAGAAGAAAATGTCGGGGGAGAGGAGAGAGAAAAAGCCGGAGAATAGTGGTTTCATTGTCATCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

104

Amino Acids

11.68

Weight (kDa)

11.82

Isoelectric Point (pI)

62.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AccIII	TCCGGA	1 cut(s)	62
AciI	CCGC	4 cut(s)	41, 44, 135, 177
AcoI	YGGCCR	2 cut(s)	124, 239
AcyI	GRCGYC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	199
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
Alw21I	GWGCWC	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	62
AoxI	GGCC	3 cut(s)	51, 124, 239
AsuC2I	CCSGG	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	151
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse118I	RCCGGY	1 cut(s)	179
BseAI	TCCGGA	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseRI	GAGGAG	3 cut(s)	109, 225, 283
BseX3I	CGGCCG	2 cut(s)	124, 239
Bsh1285I	CGRYCG	2 cut(s)	127, 242
BshFI	GGCC	3 cut(s)	53, 126, 241
BshNI	GGYRCC	1 cut(s)	182
BsiEI	CGRYCG	2 cut(s)	127, 242
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	8 cut(s)	54, 63, 123, 151, 180, 186, 238, 284
BslI	CCNNNNNNNGG	1 cut(s)	199
BsnI	GGCC	3 cut(s)	53, 126, 241
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	4 cut(s)	41, 44, 135, 177
BspANI	GGCC	3 cut(s)	53, 126, 241
BspEI	TCCGGA	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	3
BssNI	GRCGYC	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	159
BstACI	GRCGYC	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	306
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	2 cut(s)	127, 242
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 50, 123
BstSCI	CCNGG	1 cut(s)	149
BstSNI	TACGTA	1 cut(s)	92
BstZI	CGGCCG	2 cut(s)	124, 239
BsuRI	GGCC	3 cut(s)	53, 126, 241
BtsCI	GGATG	1 cut(s)	306
Cfr10I	RCCGGY	1 cut(s)	179
CseI	GACGC	1 cut(s)	38
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	7 cut(s)	53, 88, 117, 126, 131, 241, 283
CviKI_1	RGCY	7 cut(s)	53, 88, 117, 126, 131, 241, 283
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	2 cut(s)	124, 239
EagI	CGGCCG	2 cut(s)	124, 239
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EciI	GGCGGA	2 cut(s)	59, 166
Ecl136II	GAGCTC	1 cut(s)	117
EclXI	CGGCCG	2 cut(s)	124, 239
Eco105I	TACGTA	1 cut(s)	92
Eco24I	GRGCYC	1 cut(s)	119
Eco52I	CGGCCG	2 cut(s)	124, 239
Eco53kI	GAGCTC	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	1 cut(s)	200
FaiI	YATR	1 cut(s)	198
FatI	CATG	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	53, 126, 241
HapII	CCGG	8 cut(s)	54, 63, 123, 151, 180, 186, 238, 284
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	200
HinfI	GANTC	5 cut(s)	57, 104, 173, 189, 234
HpaII	CCGG	8 cut(s)	54, 63, 123, 151, 180, 186, 238, 284
Hpy188I	TCNGA	3 cut(s)	114, 209, 311
Hpy188III	TCNNGA	2 cut(s)	63, 101
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	4 cut(s)	34, 43, 107, 219
HpyCH4IV	ACGT	1 cut(s)	91
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 50, 123
HpySE526I	ACGT	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	200
Kpn2I	TCCGGA	1 cut(s)	62
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	8 cut(s)	67, 76, 136, 164, 193, 199, 251, 297
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	3 cut(s)	92, 101, 155
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	6 cut(s)	176, 228, 243, 256, 259, 262
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	2 cut(s)	34, 108
MlyI	GAGTC	2 cut(s)	98, 182
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	5 cut(s)	130, 160, 203, 206, 261
MroI	TCCGGA	1 cut(s)	62
MspI	CCGG	8 cut(s)	54, 63, 123, 151, 180, 186, 238, 284
MspR9I	CCNGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	3 cut(s)	38, 50, 123
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	184
NmeAIII	GCCGAG	1 cut(s)	152
NmuCI	GTSAC	2 cut(s)	101, 155
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PfeI	GAWTC	3 cut(s)	57, 189, 234
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	2 cut(s)	98, 181
PpsI	GAGTC	2 cut(s)	98, 181
Ppu21I	YACGTR	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	119
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	2 cut(s)	98, 182
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	4 cut(s)	26, 94, 99, 119
SgrAI	CRCCGGYG	1 cut(s)	179
SnaBI	TACGTA	1 cut(s)	92
Sse9I	AATT	2 cut(s)	34, 108
SsiI	CCGC	4 cut(s)	41, 44, 135, 177
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	149
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	3 cut(s)	27, 70, 223
TasI	AATT	2 cut(s)	34, 108
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	57, 189, 234
TseFI	GTSAC	2 cut(s)	101, 155
Tsp45I	GTSAC	2 cut(s)	101, 155
TspDTI	ATGAA	1 cut(s)	289
TspGWI	ACGGA	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.