Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Reverse (-)

37085420 .. 37090642

Gene Structure 5223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG354000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTGGATTGTTGATGCAGTGTCTCGAAGATTTGGCAACCAAGTACCCAGCTACCAAATTTGTGAAAATAATATCCACGATTTGGGGGATGATGAGATGGAGCTGCTGGTGCTGAAGACGTCGCCCACGGAGGTCCAATTTGTGCGCTCGACTGCACCATTGAAGCTTTGTTTTGAGAAAGATCTATACCTTCAGATTCTTCACCCCGAAGCAATCAAGAGCCAACACAAGAGTTCCCTGCAAGAAAGATTAATTAAGAATGGGGAGGACACCGTCCCGATAAGCATGGCTTTATCAGTTTTGAAATTGCAGAAGGGCAATCAAATGCCTGAAGATTACCCCAGATCTTTCAAAGAAGCAGCTGCAGAAAACAAGATAGTACTATGCCTACAGGCATACTTGGTCTTCTTTGCAGAAATTATGTGTTGCTTTTCTTTAATTATGACCTTGAAAATTCATGGTACTAGAATGCTAAATATTTTCTTATCTTGTGGGTTTATCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

168

Amino Acids

19.19

Weight (kDa)

6.08

Isoelectric Point (pI)

48.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	57, 453
AcuI	CTGAAG	3 cut(s)	134, 176, 351
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	3 cut(s)	45, 381, 463
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	4 cut(s)	163, 304, 352, 451
AluBI	AGCT	4 cut(s)	51, 103, 166, 362
AluI	AGCT	4 cut(s)	51, 103, 166, 362
Alw26I	GTCTC	1 cut(s)	27
ApeKI	GCWGC	3 cut(s)	103, 359, 362
ApoI	RAATTY	2 cut(s)	57, 453
AseI	ATTAAT	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	133
BbsI	GAAGAC	2 cut(s)	122, 397
BbvI	GCAGC	3 cut(s)	90, 349, 371
BccI	CCATC	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	465
BfmI	CTRYAG	2 cut(s)	363, 389
BglII	AGATCT	2 cut(s)	181, 344
BisI	GCNGC	3 cut(s)	104, 360, 363
BlsI	GCNGC	3 cut(s)	105, 361, 364
BmcAI	AGTACT	1 cut(s)	381
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmsI	GCATC	1 cut(s)	4
BpiI	GAAGAC	2 cut(s)	122, 397
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseXI	GCAGC	3 cut(s)	90, 349, 371
BseYI	CCCAGC	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	181, 344
BspMAI	CTGCAG	1 cut(s)	367
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	181, 344
BssNI	GRCGYC	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	119
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	2 cut(s)	184, 347
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	2 cut(s)	181, 344
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstSFI	CTRYAG	2 cut(s)	363, 389
BstV1I	GCAGC	3 cut(s)	90, 349, 371
BstV2I	GAAGAC	2 cut(s)	122, 397
BstX2I	RGATCY	2 cut(s)	181, 344
BstYI	RGATCY	2 cut(s)	181, 344
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	24
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	44, 380, 462
CviAII	CATG	2 cut(s)	286, 458
CviJI	RGCY	6 cut(s)	51, 103, 166, 222, 290, 362
CviKI_1	RGCY	6 cut(s)	51, 103, 166, 222, 290, 362
CviQI	GTAC	3 cut(s)	44, 380, 462
DpnI	GATC	2 cut(s)	183, 346
DpnII	GATC	2 cut(s)	181, 344
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	3 cut(s)	134, 176, 351
FaeI	CATG	2 cut(s)	289, 461
FaiI	YATR	8 cut(s)	187, 287, 385, 397, 422, 443, 459, 505
FalI	AAGNNNNNCTT	2 cut(s)	274, 306
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	285, 457
Fnu4HI	GCNGC	3 cut(s)	104, 360, 363
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	3 cut(s)	104, 360, 363
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	3 cut(s)	104, 360, 363
GsaI	CCCAGC	1 cut(s)	51
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	289, 461
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	1 cut(s)	196
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	3 cut(s)	24, 217, 277
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	200, 307
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	6 cut(s)	17, 155, 241, 310, 365, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpySE526I	ACGT	1 cut(s)	119
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	2 cut(s)	289, 461
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	181, 344
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	6 cut(s)	61, 92, 251, 342, 355, 377
Lsp1109I	GCAGC	3 cut(s)	90, 349, 371
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	1 cut(s)	119
MalI	GATC	2 cut(s)	183, 346
MboI	GATC	2 cut(s)	181, 344
MboII	GAAGA	5 cut(s)	39, 127, 191, 344, 397
MflI	RGATCY	2 cut(s)	181, 344
MluCI	AATT	7 cut(s)	57, 137, 252, 305, 417, 438, 453
MnlI	CCTC	2 cut(s)	124, 259
MseI	TTAA	3 cut(s)	251, 255, 437
MspA1I	CMGCKG	1 cut(s)	362
Mva1269I	GAATGC	1 cut(s)	474
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	2 cut(s)	181, 344
NlaIII	CATG	2 cut(s)	289, 461
PacI	TTAATTAA	1 cut(s)	255
PctI	GAATGC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	196
PflFI	GACNNNGTC	1 cut(s)	272
PflMI	CCANNNNNTGG	1 cut(s)	82
PkrI	GCNGC	3 cut(s)	105, 361, 364
PshBI	ATTAAT	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	2 cut(s)	181, 344
PsyI	GACNNNGTC	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	362
RsaI	GTAC	3 cut(s)	45, 381, 463
RsaNI	GTAC	3 cut(s)	44, 380, 462
SaqAI	TTAA	3 cut(s)	251, 255, 437
SatI	GCNGC	3 cut(s)	104, 360, 363
Sau3AI	GATC	2 cut(s)	181, 344
Sau96I	GGNCC	1 cut(s)	133
ScaI	AGTACT	1 cut(s)	381
SetI	ASST	8 cut(s)	53, 105, 122, 135, 168, 192, 364, 449
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	2 cut(s)	363, 389
SinI	GGWCC	1 cut(s)	133
Sse9I	AATT	7 cut(s)	57, 137, 252, 305, 417, 438, 453
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	25, 149
TasI	AATT	7 cut(s)	57, 137, 252, 305, 417, 438, 453
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	3 cut(s)	251, 255, 437
Tru9I	TTAA	3 cut(s)	251, 255, 437
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	3 cut(s)	103, 359, 362
TspDTI	ATGAA	1 cut(s)	446
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	24
Tth111I	GACNNNGTC	1 cut(s)	272
Van91I	CCANNNNNTGG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	133
VspI	ATTAAT	1 cut(s)	251
XapI	RAATTY	2 cut(s)	57, 453
XspI	CTAG	1 cut(s)	465
ZraI	GACGTC	1 cut(s)	120
ZrmI	AGTACT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.