Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001863.1

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Forward (+)

86812 .. 89935

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001863.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgatccttgccaaaaacctcaccctcaacggtggtttggtggccggaaaaggccggaatagccggaaatcgacgaaccctccgttcggctacagtgaacttcgcagctcaattccaagctcctccgacggagccaccgcaaaacaccaccccaggcatgacaagaaagaggacgcgagcctggcggtgcccggattccgtcgtgggtacgccggagaaggaagaattcagaggaagaagaaattggctgaagaggaagaaagggtcggggagaagagagagaaaagccgggctatcaacaacgatgtggatgacctatctcctcttagtgctttaactgctgaggttaaggatctggtactttctagtgatgatatatgtattagatatgcctctcgtcaggctaatacagtagctcataggcttgctagtcatagtttcgattctaatgttcatcatgaatggtttgtaaatgctccagacttaatactagatgccctcatatacgatcttcatcgtattcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

175

Amino Acids

19.42

Weight (kDa)

9.01

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	187
AccII	CGCG	1 cut(s)	176
AciI	CCGC	2 cut(s)	138, 185
AclWI	GGATC	1 cut(s)	360
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	2 cut(s)	209, 360
AfiI	CCNNNNNNNGG	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	152, 180
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	3 cut(s)	108, 120, 416
AluI	AGCT	3 cut(s)	108, 120, 416
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	2 cut(s)	42, 52
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	1 cut(s)	225
AsuC2I	CCSGG	2 cut(s)	192, 290
AsuHPI	GGTGA	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	187
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	117
BciT130I	CCWGG	2 cut(s)	154, 182
BcnI	CCSGG	2 cut(s)	192, 290
BfaI	CTAG	3 cut(s)	366, 429, 491
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	4 cut(s)	154, 182, 192, 290
BmiI	GGNNCC	2 cut(s)	133, 189
BmrFI	CCNGG	4 cut(s)	154, 182, 192, 290
BmsI	GCATC	1 cut(s)	484
BpmI	CTGGAG	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	342
BpuMI	CCSGG	2 cut(s)	192, 290
BsaBI	GATNNNNATC	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	2 cut(s)	154, 182
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	2 cut(s)	112, 312
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	44, 54
BshNI	GGYRCC	1 cut(s)	187
BsiSI	CCGG	6 cut(s)	45, 55, 64, 192, 213, 289
BslI	CCNNNNNNNGG	1 cut(s)	86
BsnI	GGCC	2 cut(s)	44, 54
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	3, 352, 508
BspACI	CCGC	2 cut(s)	138, 185
BspANI	GGCC	2 cut(s)	44, 54
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	133, 189
BspPI	GGATC	1 cut(s)	360
BspT107I	GGYRCC	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	3 cut(s)	3, 352, 508
Bst2UI	CCWGG	2 cut(s)	154, 182
Bst4CI	ACNGT	3 cut(s)	32, 95, 412
Bst6I	CTCTTC	2 cut(s)	246, 269
BstC8I	GCNNGC	2 cut(s)	178, 426
BstDEI	CTNAG	2 cut(s)	326, 342
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	3 cut(s)	6, 355, 511
BstMBI	GATC	3 cut(s)	3, 352, 508
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 182, 338
BstNI	CCWGG	2 cut(s)	154, 182
BstSCI	CCNGG	4 cut(s)	152, 180, 190, 288
BstSFI	CTRYAG	1 cut(s)	91
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	44, 54
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	2 cut(s)	178, 426
CciI	TCATGA	1 cut(s)	457
CseI	GACGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	208, 359
CviAII	CATG	2 cut(s)	158, 458
CviQI	GTAC	2 cut(s)	208, 359
DdeI	CTNAG	2 cut(s)	326, 342
DpnI	GATC	3 cut(s)	5, 354, 510
DpnII	GATC	3 cut(s)	3, 352, 508
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	246, 269
EarI	CTCTTC	2 cut(s)	246, 269
Eco57I	CTGAAG	1 cut(s)	270
EcoRI	GAATTC	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	152, 180
FaeI	CATG	2 cut(s)	161, 461
FaiI	YATR	9 cut(s)	159, 377, 379, 390, 420, 435, 459, 503, 505
FatI	CATG	2 cut(s)	157, 457
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	3 cut(s)	366, 429, 491
GluI	GCNGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	44, 54
HapII	CCGG	6 cut(s)	45, 55, 64, 192, 213, 289
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	161, 461
HinfI	GANTC	2 cut(s)	195, 443
HpaII	CCGG	6 cut(s)	45, 55, 64, 192, 213, 289
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	127, 231
Hpy188III	TCNNGA	2 cut(s)	458, 479
Hpy8I	GTNNAC	1 cut(s)	98
Hpy99I	CGWCG	3 cut(s)	76, 131, 204
HpyAV	CCTTC	1 cut(s)	212
HpyCH4III	ACNGT	3 cut(s)	32, 95, 412
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 182, 338
HpyF3I	CTNAG	2 cut(s)	326, 342
Hsp92II	CATG	2 cut(s)	161, 461
Kzo9I	GATC	3 cut(s)	3, 352, 508
LmnI	GCTCC	3 cut(s)	125, 131, 481
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	3 cut(s)	366, 429, 491
MalI	GATC	3 cut(s)	5, 354, 510
MboI	GATC	3 cut(s)	3, 352, 508
MboII	GAAGA	7 cut(s)	234, 247, 250, 263, 269, 286, 503
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	3 cut(s)	111, 225, 242
MmeI	TCCRAC	1 cut(s)	150
MseI	TTAA	4 cut(s)	335, 348, 485, 526
MspI	CCGG	6 cut(s)	45, 55, 64, 192, 213, 289
MspR9I	CCNGG	4 cut(s)	154, 182, 192, 290
MvaI	CCWGG	2 cut(s)	154, 182
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	3 cut(s)	60, 182, 338
NciI	CCSGG	2 cut(s)	192, 290
NdeII	GATC	3 cut(s)	3, 352, 508
NlaIII	CATG	2 cut(s)	161, 461
NlaIV	GGNNCC	2 cut(s)	133, 189
PagI	TCATGA	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	195, 443
PkrI	GCNGC	1 cut(s)	107
Psp6I	CCWGG	2 cut(s)	152, 180
PspGI	CCWGG	2 cut(s)	152, 180
PspN4I	GGNNCC	2 cut(s)	133, 189
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	2 cut(s)	209, 360
RsaNI	GTAC	2 cut(s)	208, 359
SaqAI	TTAA	4 cut(s)	335, 348, 485, 526
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	3 cut(s)	3, 352, 508
ScrFI	CCNGG	4 cut(s)	154, 182, 192, 290
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	6 cut(s)	21, 110, 122, 318, 348, 418
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	1 cut(s)	91
Sse9I	AATT	3 cut(s)	111, 225, 242
SsiI	CCGC	2 cut(s)	138, 185
SspMI	CTAG	3 cut(s)	366, 429, 491
StyD4I	CCNGG	4 cut(s)	152, 180, 190, 288
TaaI	ACNGT	3 cut(s)	32, 95, 412
TaqI	TCGA	2 cut(s)	71, 441
TasI	AATT	3 cut(s)	111, 225, 242
TfiI	GAWTC	2 cut(s)	195, 443
Tru1I	TTAA	4 cut(s)	335, 348, 485, 526
Tru9I	TTAA	4 cut(s)	335, 348, 485, 526
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	1 cut(s)	105
TspDTI	ATGAA	4 cut(s)	443, 474, 503, 512
TspGWI	ACGGA	3 cut(s)	72, 144, 188
TspRI	CASTG	1 cut(s)	100
XapI	RAATTY	1 cut(s)	225
XspI	CTAG	3 cut(s)	366, 429, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.