Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005832.1

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Forward (+)

13290 .. 18224

Gene Structure 4935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005832.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgatctatgtcaaaaaccgaaccttcgatgccggtttggtggccggagacggtcggaatcgccggaaatcgccaaaactcccaaactgctacagtgaacttcacggcttaattccgagctctaccggtcgagccaccgcaaaacaccagcacaggcgtgacaagaaggaggaggcgagcttgccggtcccggattcagtcgtggggtggccggaggaggaagaaatcggaaggagaagaaatcgggccgaagaggagaaagggtcgggggagaggagagagaaaagctggataagtttccaaaaatggcaacgtaccacactttgcaagcatgaggaggactcgcaggctgatgatggagatacaacttttactttatttgcatctctacttgactctgctcttcaaggtatgtgtgtcttggctggctatgatttccttccatctgttcctggaattgggattggtaaagcttatgccttggctttatcaattttgaaattgcagaagggtaatcaaatgcctgaagattatcccagatctttcaaagaagcagctgcagaaaacaagatagtactacgcctacatgcatacttggtcttctttgcagaaattatgtcttgctttctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03430 map03430

Pfam Domains

Protein Families

XPG_I XPG_N

Protein Analysis

210

Amino Acids

23.64

Weight (kDa)

8.3

Isoelectric Point (pI)

64.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	138
AcoI	YGGCCR	2 cut(s)	42, 209
AcuI	CTGAAG	1 cut(s)	546
AfaI	GTAC	2 cut(s)	316, 576
AfiI	CCNNNNNNNGG	1 cut(s)	458
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	407, 499, 547
AjnI	CCWGG	1 cut(s)	451
AleI	CACNNNNGTG	1 cut(s)	156
AluBI	AGCT	5 cut(s)	120, 180, 288, 473, 557
AluI	AGCT	5 cut(s)	120, 180, 288, 473, 557
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	1 cut(s)	42
AoxI	GGCC	3 cut(s)	42, 209, 246
ApeKI	GCWGC	2 cut(s)	554, 557
AsiGI	ACCGGT	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	187, 246
AsuC2I	CCSGG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	592
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	544, 566
BccI	CCATC	2 cut(s)	350, 451
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	453
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	91, 558
BglII	AGATCT	1 cut(s)	539
BisI	GCNGC	2 cut(s)	555, 558
BlsI	GCNGC	2 cut(s)	556, 559
BmcAI	AGTACT	1 cut(s)	576
Bme1390I	CCNGG	2 cut(s)	191, 453
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	187, 246
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	2 cut(s)	191, 453
BmsI	GCATC	2 cut(s)	19, 392
BpiI	GAAGAC	1 cut(s)	592
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
BpuMI	CCSGG	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	480
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse118I	RCCGGY	3 cut(s)	32, 125, 184
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseRI	GAGGAG	5 cut(s)	185, 230, 269, 289, 350
BseXI	GCAGC	2 cut(s)	544, 566
Bsh1285I	CGRYCG	2 cut(s)	55, 130
BshFI	GGCC	3 cut(s)	44, 211, 248
BshTI	ACCGGT	1 cut(s)	125
BsiEI	CGRYCG	2 cut(s)	55, 130
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	7 cut(s)	33, 45, 64, 126, 185, 191, 212
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	3 cut(s)	44, 211, 248
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	3, 539
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	3 cut(s)	44, 211, 248
BspLI	GGNNCC	1 cut(s)	189
BspMAI	CTGCAG	1 cut(s)	562
BspQI	GCTCTTC	1 cut(s)	408
BsrFI	RCCGGY	3 cut(s)	32, 125, 184
BssAI	RCCGGY	3 cut(s)	32, 125, 184
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	2 cut(s)	3, 539
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	2 cut(s)	53, 95
Bst6I	CTCTTC	2 cut(s)	246, 408
BstC8I	GCNNGC	5 cut(s)	178, 182, 329, 348, 427
BstKTI	GATC	2 cut(s)	6, 542
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	3, 539
BstMCI	CGRYCG	2 cut(s)	55, 130
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	2 cut(s)	189, 451
BstSFI	CTRYAG	2 cut(s)	91, 558
BstV1I	GCAGC	2 cut(s)	544, 566
BstV2I	GAAGAC	1 cut(s)	592
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BsuRI	GGCC	3 cut(s)	44, 211, 248
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	5 cut(s)	178, 182, 329, 348, 427
Cfr10I	RCCGGY	3 cut(s)	32, 125, 184
Cfr13I	GGNCC	2 cut(s)	187, 246
Csp6I	GTAC	2 cut(s)	315, 575
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	2 cut(s)	332, 587
CviQI	GTAC	2 cut(s)	315, 575
DpnI	GATC	2 cut(s)	5, 541
DpnII	GATC	2 cut(s)	3, 539
EaeI	YGGCCR	2 cut(s)	42, 209
Eam1104I	CTCTTC	2 cut(s)	246, 408
EarI	CTCTTC	2 cut(s)	246, 408
Ecl136II	GAGCTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	546
EcoICRI	GAGCTC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	2 cut(s)	335, 590
FaiI	YATR	8 cut(s)	9, 333, 413, 432, 477, 588, 592, 617
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	331, 586
Fnu4HI	GCNGC	2 cut(s)	555, 558
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	555, 558
GluI	GCNGC	2 cut(s)	555, 558
HaeIII	GGCC	3 cut(s)	44, 211, 248
HapII	CCGG	7 cut(s)	33, 45, 64, 126, 185, 191, 212
Hin1II	CATG	2 cut(s)	335, 590
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	4 cut(s)	58, 194, 341, 395
HpaII	CCGG	7 cut(s)	33, 45, 64, 126, 185, 191, 212
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	3 cut(s)	57, 117, 230
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	5 cut(s)	34, 160, 225, 449, 502
HpyCH4III	ACNGT	2 cut(s)	53, 95
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	6 cut(s)	327, 383, 505, 560, 590, 608
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	2 cut(s)	335, 590
Kzo9I	GATC	2 cut(s)	3, 539
LguI	GCTCTTC	1 cut(s)	408
Lsp1109I	GCAGC	2 cut(s)	544, 566
LweI	GCATC	2 cut(s)	19, 392
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	2 cut(s)	5, 541
MboI	GATC	2 cut(s)	3, 539
MboII	GAAGA	6 cut(s)	233, 249, 263, 395, 539, 592
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	5 cut(s)	111, 456, 492, 500, 612
MlyI	GAGTC	2 cut(s)	335, 389
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	8 cut(s)	163, 166, 208, 211, 247, 267, 328, 331
Mph1103I	ATGCAT	1 cut(s)	592
MseI	TTAA	2 cut(s)	110, 631
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	7 cut(s)	33, 45, 64, 126, 185, 191, 212
MspR9I	CCNGG	2 cut(s)	191, 453
MvaI	CCWGG	1 cut(s)	453
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	2 cut(s)	3, 539
NlaIII	CATG	2 cut(s)	335, 590
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	592
NspI	RCATGY	1 cut(s)	590
OliI	CACNNNNGTG	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	58, 194
PfoI	TCCNGGA	2 cut(s)	189, 451
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	556, 559
PleI	GAGTC	2 cut(s)	335, 389
PpsI	GAGTC	2 cut(s)	335, 389
Psp124BI	GAGCTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	2 cut(s)	187, 246
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	2 cut(s)	316, 576
RsaNI	GTAC	2 cut(s)	315, 575
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	110, 631
SatI	GCNGC	2 cut(s)	555, 558
Sau3AI	GATC	2 cut(s)	3, 539
Sau96I	GGNCC	2 cut(s)	187, 246
ScaI	AGTACT	1 cut(s)	576
SchI	GAGTC	2 cut(s)	335, 389
ScrFI	CCNGG	2 cut(s)	191, 453
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	8 cut(s)	26, 122, 182, 290, 316, 412, 475, 559
SfaNI	GCATC	2 cut(s)	19, 392
SfcI	CTRYAG	2 cut(s)	91, 558
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	156
Sse9I	AATT	5 cut(s)	111, 456, 492, 500, 612
SsiI	CCGC	1 cut(s)	138
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	189, 451
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	53, 95
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	2 cut(s)	27, 130
TasI	AATT	5 cut(s)	111, 456, 492, 500, 612
TatI	WGTACW	1 cut(s)	574
TfiI	GAWTC	2 cut(s)	58, 194
Tru1I	TTAA	2 cut(s)	110, 631
Tru9I	TTAA	2 cut(s)	110, 631
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	554, 557
Tsp45I	GTSAC	1 cut(s)	158
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	187
XceI	RCATGY	1 cut(s)	590
ZrmI	AGTACT	1 cut(s)	576
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.