Prupe.3G158900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0002742
Physical Location & Seq
Reverse (-)
17756377 .. 17758572
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G158900.1

Sequence Viewer

Length: 315 bp
ATGACTGGTGGAATTGGATGTGTGCAGTGTGGCACACGTAGCAACCCATGTAGGTGCAAGGTGGTGGGGCCTACCTTAGGGTGTTTATGCTTTCTTGGAGCTGCCATTATTGAATGGCCTATTGGGGCTTGTGTTTACTTGTTCAAGCACGTCAAGGGGAGAAGAATCATGGCTCATCCGGCCACTGTTGTTTATCCGAAGCCATGGCAAGGCCTCTTGCTCCAAGCTTCTCCATGGCCTCTCACCACTTGTTTCAACACCAATCACATTTTCTCTTCGCCCTCATTGTATTTTTCTCCATGTTTTCTCTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.33

Weight (kDa)

9.13

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 77, 209
AflIII ACRYGT 1 cut(s) 35
AgsI TTSAA 3 cut(s) 113, 145, 256
AjiI CACGTC 1 cut(s) 151
AjuI GAANNNNNNNTTGG 4 cut(s) 105, 137, 254, 286
AluBI AGCT 2 cut(s) 101, 227
AluI AGCT 2 cut(s) 101, 227
AoxI GGCC 5 cut(s) 68, 116, 180, 211, 236
ApeKI GCWGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 235
AxyI CCTNAGG 1 cut(s) 76
BbvI GCAGC 1 cut(s) 88
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 1 cut(s) 68
BmiI GGNNCC 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 209
Bse1I ACTGG 1 cut(s) 10
Bse21I CCTNAGG 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 203, 233
BseGI GGATG 2 cut(s) 23, 175
BseLI CCNNNNNNNGG 2 cut(s) 77, 209
BseNI ACTGG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 44
BshFI GGCC 5 cut(s) 70, 118, 182, 213, 238
BsiSI CCGG 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 77, 209
BsnI GGCC 5 cut(s) 70, 118, 182, 213, 238
Bsp19I CCATGG 2 cut(s) 203, 233
BspANI GGCC 5 cut(s) 70, 118, 182, 213, 238
BspLI GGNNCC 1 cut(s) 69
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 203, 233
BssT1I CCWWGG 2 cut(s) 203, 233
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 280
BstBAI YACGTR 1 cut(s) 38
BstDEI CTNAG 1 cut(s) 76
BstDSI CCRYGG 2 cut(s) 203, 233
BstENI CCTNNNNNAGG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 23, 175
BstMWI GCNNNNNNNGC 2 cut(s) 39, 179
BstV1I GCAGC 1 cut(s) 88
Bsu36I CCTNAGG 1 cut(s) 76
BsuRI GGCC 5 cut(s) 70, 118, 182, 213, 238
BtgI CCRYGG 2 cut(s) 203, 233
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 2 cut(s) 23, 175
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 2 cut(s) 32, 183
Cfr13I GGNCC 1 cut(s) 68
CviAII CATG 5 cut(s) 48, 169, 204, 234, 300
DdeI CTNAG 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
Eco130I CCWWGG 2 cut(s) 203, 233
Eco147I AGGCCT 1 cut(s) 213
Eco81I CCTNAGG 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 68
EcoT14I CCWWGG 2 cut(s) 203, 233
ErhI CCWWGG 2 cut(s) 203, 233
FaeI CATG 5 cut(s) 51, 172, 207, 237, 303
FaiI YATR 6 cut(s) 49, 88, 170, 205, 235, 301
FatI CATG 5 cut(s) 47, 168, 203, 233, 299
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 2 cut(s) 30, 162
Fsp4HI GCNGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 102
HaeIII GGCC 5 cut(s) 70, 118, 182, 213, 238
HapII CCGG 1 cut(s) 179
Hin1II CATG 5 cut(s) 51, 172, 207, 237, 303
HindIII AAGCTT 1 cut(s) 225
HinfI GANTC 1 cut(s) 165
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 198
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 2 cut(s) 37, 150
HpyCH4V TGCA 2 cut(s) 25, 57
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 179
HpyF3I CTNAG 1 cut(s) 76
HpySE526I ACGT 2 cut(s) 37, 150
Hsp92II CATG 5 cut(s) 51, 172, 207, 237, 303
LmnI GCTCC 2 cut(s) 98, 225
LpnPI CCDG 1 cut(s) 192
Lsp1109I GCAGC 1 cut(s) 88
MaeII ACGT 2 cut(s) 37, 150
MboII GAAGA 2 cut(s) 174, 267
MluCI AATT 1 cut(s) 12
MnlI CCTC 3 cut(s) 224, 249, 292
MslI CAYNNNNRTG 1 cut(s) 52
MspI CCGG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 39, 179
NcoI CCATGG 2 cut(s) 203, 233
NlaIII CATG 5 cut(s) 51, 172, 207, 237, 303
NlaIV GGNNCC 1 cut(s) 69
PceI AGGCCT 1 cut(s) 213
PfeI GAWTC 1 cut(s) 165
PkrI GCNGC 1 cut(s) 103
Ppu21I YACGTR 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 52
SatI GCNGC 1 cut(s) 102
Sau96I GGNCC 1 cut(s) 68
SetI ASST 7 cut(s) 40, 56, 63, 77, 103, 153, 229
SmiMI CAYNNNNRTG 1 cut(s) 52
Sse9I AATT 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 213
StuI AGGCCT 1 cut(s) 213
StyI CCWWGG 2 cut(s) 203, 233
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 2 cut(s) 40, 153
TasI AATT 1 cut(s) 12
TfiI GAWTC 1 cut(s) 165
TscAI CASTG 2 cut(s) 32, 190
TseI GCWGC 1 cut(s) 101
TspRI CASTG 2 cut(s) 32, 190
XagI CCTNNNNNAGG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.