RLG00000015816

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002742
Physical Location & Seq
Reverse (-)
1614739 .. 1616049
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015816

Sequence Viewer

Length: 342 bp
ATGATCCTTGACGAAAACCCCACCTTCGACGCCGGTTTGGTAGCCGGAGACGGCCGGAATCGCCGGAAATCGACAAAACTCCCGTTCGGCTACAGTAACCTTCGCTGCTCAATTCCGACCTCCTCTGATCGAGCCACCTCAAAACATCACCACAGGCATGACAAAGAGGAGGAGGCGAGCTTGTCCATGCCCGGATTCCATCGTGAGGTGGCCGGAAACGGAAGAATTTGCCGATGGAAGAAAACGGCAGAAGGGGAAGGAAAATCGGGGAAGAGGAGAGAGAAAAGCCGGTTTGTATTATTTATTAGTCGTGGTTATGGAGGTGTCCAGGAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.73

Weight (kDa)

10.07

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 52, 210
AcsI RAATTY 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 205
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 42
AoxI GGCC 2 cut(s) 52, 210
ApeKI GCWGC 1 cut(s) 105
ApoI RAATTY 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 140
BbvI GCAGC 1 cut(s) 92
BccI CCATC 2 cut(s) 207, 228
BceAI ACGGC 2 cut(s) 67, 261
BciT130I CCWGG 1 cut(s) 329
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 192, 329
BmrFI CCNGG 2 cut(s) 192, 329
BpuMI CCSGG 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 2 cut(s) 32, 288
BseBI CCWGG 1 cut(s) 329
BseLI CCNNNNNNNGG 1 cut(s) 205
BseRI GAGGAG 4 cut(s) 112, 182, 185, 289
BseX3I CGGCCG 1 cut(s) 52
BseXI GCAGC 1 cut(s) 92
Bsh1285I CGRYCG 1 cut(s) 55
BshFI GGCC 2 cut(s) 54, 212
BsiEI CGRYCG 1 cut(s) 55
BsiSI CCGG 7 cut(s) 33, 45, 55, 64, 192, 213, 289
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 42
BsmBI CGTCTC 1 cut(s) 42
BsnI GGCC 2 cut(s) 54, 212
Bsp143I GATC 2 cut(s) 3, 127
BspANI GGCC 2 cut(s) 54, 212
BsrFI RCCGGY 2 cut(s) 32, 288
BssAI RCCGGY 2 cut(s) 32, 288
BssMI GATC 2 cut(s) 3, 127
BssNI GRCGYC 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 178
BstKTI GATC 2 cut(s) 6, 130
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 2 cut(s) 3, 127
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 2 cut(s) 190, 327
BstSFI CTRYAG 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 92
BstZI CGGCCG 1 cut(s) 52
BsuRI GGCC 2 cut(s) 54, 212
Cac8I GCNNGC 1 cut(s) 178
Cfr10I RCCGGY 2 cut(s) 32, 288
CseI GACGC 1 cut(s) 38
CviAII CATG 2 cut(s) 158, 187
CviJI RGCY 7 cut(s) 44, 54, 90, 134, 180, 212, 288
CviKI_1 RGCY 7 cut(s) 44, 54, 90, 134, 180, 212, 288
DpnI GATC 2 cut(s) 5, 129
DpnII GATC 2 cut(s) 3, 127
EaeI YGGCCR 2 cut(s) 52, 210
EagI CGGCCG 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EclXI CGGCCG 1 cut(s) 52
Eco52I CGGCCG 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 327
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 2 cut(s) 161, 190
FaiI YATR 3 cut(s) 159, 188, 318
FatI CATG 2 cut(s) 157, 186
Fnu4HI GCNGC 1 cut(s) 106
Fsp4HI GCNGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 106
HaeIII GGCC 2 cut(s) 54, 212
HapII CCGG 7 cut(s) 33, 45, 55, 64, 192, 213, 289
HgaI GACGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 161, 190
HinfI GANTC 2 cut(s) 58, 195
HpaII CCGG 7 cut(s) 33, 45, 55, 64, 192, 213, 289
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 2 cut(s) 117, 127
Hpy188III TCNNGA 1 cut(s) 203
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 4 cut(s) 34, 110, 245, 251
HpyCH4III ACNGT 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 161, 190
Kzo9I GATC 2 cut(s) 3, 127
LpnPI CCDG 9 cut(s) 46, 58, 68, 77, 139, 205, 226, 302, 314
Lsp1109I GCAGC 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 5, 129
MboI GATC 2 cut(s) 3, 127
MboII GAAGA 3 cut(s) 234, 250, 283
MluCI AATT 2 cut(s) 111, 225
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 9 cut(s) 130, 133, 148, 160, 163, 166, 199, 267, 314
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 7 cut(s) 33, 45, 55, 64, 192, 213, 289
MspR9I CCNGG 2 cut(s) 192, 329
MvaI CCWGG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 60
NciI CCSGG 1 cut(s) 192
NdeII GATC 2 cut(s) 3, 127
NlaIII CATG 2 cut(s) 161, 190
PfeI GAWTC 2 cut(s) 58, 195
PfoI TCCNGGA 1 cut(s) 327
PkrI GCNGC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
RseI CAYNNNNRTG 1 cut(s) 156
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 2 cut(s) 3, 127
ScrFI CCNGG 2 cut(s) 192, 329
SetI ASST 7 cut(s) 26, 102, 122, 140, 182, 210, 325
SfcI CTRYAG 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 156
Sse9I AATT 2 cut(s) 111, 225
StyD4I CCNGG 2 cut(s) 190, 327
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 3 cut(s) 27, 71, 130
TasI AATT 2 cut(s) 111, 225
TfiI GAWTC 2 cut(s) 58, 195
TseI GCWGC 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 234
XapI RAATTY 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.