Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Forward (+)

60241426 .. 60244725

Gene Structure 3300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG367900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGACTGGTGGTATTGGATGCGTGCAGTGCGGAACGCGCAGCAACCCCTGCCGGTGCAAGGTGGTGGGCCCTACCTTGGGGGTCCTAGCCTTCGCCGTGGCGGCGATCGTGGAATGGCCTGTGGGTGCTGTTGTCTACTTGTTCCGCCACACGAAGGGTCGCCGAATCATGGGTCATCCGTCCACTGTTGTTTACCCCAAGATCGAGCGACCAATAAGAACTCGGTCGGATGAAGATTTTTACACTCTTAATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.35

Weight (kDa)

9.62

Isoelectric Point (pI)

29.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	37
AciI	CCGC	3 cut(s)	30, 101, 145
AfiI	CCNNNNNNNGG	5 cut(s)	58, 76, 77, 154, 169
AoxI	GGCC	2 cut(s)	67, 116
ApaI	GGGCCC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	39
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	3 cut(s)	67, 68, 82
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	51
BceAI	ACGGC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	86
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	2 cut(s)	40, 102
BlsI	GCNGC	2 cut(s)	41, 103
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	3 cut(s)	67, 68, 82
BmiI	GGNNCC	2 cut(s)	69, 83
BmsI	GCATC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	75, 96
Bsc4I	CCNNNNNNNGG	5 cut(s)	58, 76, 77, 154, 169
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	75, 96
BseGI	GGATG	3 cut(s)	23, 175, 235
BseLI	CCNNNNNNNGG	5 cut(s)	58, 76, 77, 154, 169
BseNI	ACTGG	1 cut(s)	10
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	37
Bsh1285I	CGRYCG	2 cut(s)	108, 227
BshFI	GGCC	2 cut(s)	69, 118
BsiEI	CGRYCG	2 cut(s)	108, 227
BsiSI	CCGG	1 cut(s)	52
BslI	CCNNNNNNNGG	5 cut(s)	58, 76, 77, 154, 169
BsnI	GGCC	2 cut(s)	69, 118
Bsp120I	GGGCCC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	105, 201
BspACI	CCGC	3 cut(s)	30, 101, 145
BspANI	GGCC	2 cut(s)	69, 118
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	69, 83
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	75, 96
BssMI	GATC	2 cut(s)	105, 201
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	187
BstAPI	GCANNNNNTGC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	3 cut(s)	23, 175, 235
BstFNI	CGCG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	2 cut(s)	108, 204
BstMBI	GATC	2 cut(s)	105, 201
BstMCI	CGRYCG	2 cut(s)	108, 227
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 36, 48, 101
BstSLI	GKGCMC	1 cut(s)	71
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	69, 118
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	23, 175, 235
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	2 cut(s)	32, 183
Cac8I	GCNNGC	1 cut(s)	23
CfoI	GCGC	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	3 cut(s)	67, 68, 82
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	3 cut(s)	69, 89, 118
CviKI_1	RGCY	3 cut(s)	69, 89, 118
DpnI	GATC	2 cut(s)	107, 203
DpnII	GATC	2 cut(s)	105, 201
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	82
EcoO109I	RGGNCCY	2 cut(s)	68, 82
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	172
FaiI	YATR	1 cut(s)	170
FatI	CATG	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	40, 102
FokI	GGATG	3 cut(s)	30, 162, 242
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	40, 102
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	2 cut(s)	40, 102
HaeIII	GGCC	2 cut(s)	69, 118
HapII	CCGG	1 cut(s)	52
HhaI	GCGC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	136, 183, 193
Hpy188I	TCNGA	1 cut(s)	229
Hpy8I	GTNNAC	3 cut(s)	136, 183, 193
HpyAV	CCTTC	2 cut(s)	100, 148
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	25, 57
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 36, 48, 101
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	37
Kzo9I	GATC	2 cut(s)	105, 201
LpnPI	CCDG	3 cut(s)	61, 65, 132
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	1 cut(s)	8
MaeI	CTAG	1 cut(s)	86
MalI	GATC	2 cut(s)	107, 203
MboI	GATC	2 cut(s)	105, 201
MboII	GAAGA	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	207
MseI	TTAA	1 cut(s)	249
MspI	CCGG	1 cut(s)	52
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	4 cut(s)	27, 36, 48, 101
NdeII	GATC	2 cut(s)	105, 201
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	2 cut(s)	69, 83
PfeI	GAWTC	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	41, 103
Ple19I	CGATCG	1 cut(s)	108
PpuMI	RGGWCCY	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	69, 83
PspOMI	GGGCCC	1 cut(s)	67
PspPI	GGNCC	3 cut(s)	67, 68, 82
PspPPI	RGGWCCY	1 cut(s)	82
PvuI	CGATCG	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	40, 102
Sau3AI	GATC	2 cut(s)	105, 201
Sau96I	GGNCC	3 cut(s)	67, 68, 82
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	2 cut(s)	63, 77
SfaNI	GCATC	1 cut(s)	8
SinI	GGWCC	1 cut(s)	82
SsiI	CCGC	3 cut(s)	30, 101, 145
SspMI	CTAG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	204
TaqII	GACCGA	1 cut(s)	213
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	2 cut(s)	32, 190
TseI	GCWGC	1 cut(s)	39
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	2 cut(s)	32, 190
VpaK11BI	GGWCC	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.