Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Forward (+)

29125896 .. 29126180

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGATCCATAGTAAAAACCGAACCTTCGACGGTGGTTTGGTGGCCGGGGACCGCCGGAATCGCCGGAAATCGGTGAAACTTCCATTCGGCTACGGTAAACTTCGTGGCTCAATTCCGAGCTCCTCCGGCCGAGCCACCGCAAAACACCACCCCGGGCGTGACAAGGAAGAGGGCGAGTCCGCGGTGCCGGATTTCGTCGTGGGTCTGCCGGAGAAGGGAGAATTCGGAGGAGGTAGAATCGGGCCGAAGAGGAAGAGGAGAGAGAAAAAGCCGGTAGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.28

Weight (kDa)

11.0

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	184
AccII	CGCG	1 cut(s)	182
AciI	CCGC	4 cut(s)	52, 138, 180, 182
AcoI	YGGCCR	2 cut(s)	42, 127
AcsI	RAATTY	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	70, 215
AluBI	AGCT	1 cut(s)	120
AluI	AGCT	1 cut(s)	120
Alw21I	GWGCWC	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	3 cut(s)	42, 127, 242
ApoI	RAATTY	1 cut(s)	221
AspS9I	GGNCC	2 cut(s)	49, 242
AsuC2I	CCSGG	3 cut(s)	46, 153, 154
AsuHPI	GGTGA	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	122
BcnI	CCSGG	3 cut(s)	46, 153, 154
Bme1390I	CCNGG	3 cut(s)	46, 153, 154
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	49, 242
BmiI	GGNNCC	2 cut(s)	50, 186
BmrFI	CCNGG	3 cut(s)	46, 153, 154
BpuMI	CCSGG	3 cut(s)	46, 153, 154
BsaJI	CCNNGG	4 cut(s)	45, 151, 152, 180
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 215
Bse118I	RCCGGY	1 cut(s)	271
BseDI	CCNNGG	4 cut(s)	45, 151, 152, 180
BseLI	CCNNNNNNNGG	2 cut(s)	70, 215
BseRI	GAGGAG	3 cut(s)	112, 243, 271
BseX3I	CGGCCG	1 cut(s)	127
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	3 cut(s)	44, 129, 244
BshNI	GGYRCC	1 cut(s)	184
BsiEI	CGRYCG	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	8 cut(s)	45, 55, 64, 126, 153, 188, 209, 272
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	70, 215
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	3 cut(s)	44, 129, 244
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	4 cut(s)	52, 138, 180, 182
BspANI	GGCC	3 cut(s)	44, 129, 244
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	50, 186
BspT107I	GGYRCC	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	271
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	4 cut(s)	45, 151, 152, 180
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	2 cut(s)	32, 95
Bst6I	CTCTTC	3 cut(s)	162, 242, 248
BstDSI	CCRYGG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	182
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 126
BstSCI	CCNGG	3 cut(s)	44, 151, 152
BstUI	CGCG	1 cut(s)	182
BstZI	CGGCCG	1 cut(s)	127
BsuRI	GGCC	3 cut(s)	44, 129, 244
BtgI	CCRYGG	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	49, 242
Cfr42I	CCGCGG	1 cut(s)	183
Cfr9I	CCCGGG	1 cut(s)	152
CviJI	RGCY	8 cut(s)	44, 90, 108, 120, 129, 134, 244, 271
CviKI_1	RGCY	8 cut(s)	44, 90, 108, 120, 129, 134, 244, 271
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	2 cut(s)	42, 127
EagI	CGGCCG	1 cut(s)	127
Eam1104I	CTCTTC	3 cut(s)	162, 242, 248
EarI	CTCTTC	3 cut(s)	162, 242, 248
Ecl136II	GAGCTC	1 cut(s)	120
EclXI	CGGCCG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	49
Eco52I	CGGCCG	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	120
EcoRI	GAATTC	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	122
FaiI	YATR	1 cut(s)	9
FaqI	GGGAC	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	122
HaeIII	GGCC	3 cut(s)	44, 129, 244
HapII	CCGG	8 cut(s)	45, 55, 64, 126, 153, 188, 209, 272
HinfI	GANTC	3 cut(s)	58, 176, 237
HpaII	CCGG	8 cut(s)	45, 55, 64, 126, 153, 188, 209, 272
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	117, 227
Hpy8I	GTNNAC	1 cut(s)	98
Hpy99I	CGWCG	2 cut(s)	32, 200
HpyAV	CCTTC	2 cut(s)	34, 208
HpyCH4III	ACNGT	2 cut(s)	32, 95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 126
KspI	CCGCGG	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	7 cut(s)	58, 68, 77, 139, 166, 201, 222
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	179, 259, 265
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	2 cut(s)	111, 221
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	6 cut(s)	133, 163, 221, 224, 243, 249
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	8 cut(s)	45, 55, 64, 126, 153, 188, 209, 272
MspR9I	CCNGG	3 cut(s)	46, 153, 154
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	2 cut(s)	60, 126
NciI	CCSGG	3 cut(s)	46, 153, 154
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	2 cut(s)	50, 186
NmeAIII	GCCGAG	1 cut(s)	155
NmuCI	GTSAC	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	58, 237
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	50, 186
PspPI	GGNCC	2 cut(s)	49, 242
SacI	GAGCTC	1 cut(s)	122
SacII	CCGCGG	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	2 cut(s)	49, 242
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	3 cut(s)	46, 153, 154
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	4 cut(s)	26, 122, 235, 280
Sfr303I	CCGCGG	1 cut(s)	183
SgrBI	CCGCGG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	49
SmaI	CCCGGG	1 cut(s)	154
Sse9I	AATT	2 cut(s)	111, 221
SsiI	CCGC	4 cut(s)	52, 138, 180, 182
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	3 cut(s)	44, 151, 152
TaaI	ACNGT	2 cut(s)	32, 95
TaqI	TCGA	1 cut(s)	27
TasI	AATT	2 cut(s)	111, 221
TfiI	GAWTC	2 cut(s)	58, 237
TseFI	GTSAC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	158
TspMI	CCCGGG	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	221
XmaI	CCCGGG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.