Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Forward (+)

4822276 .. 4848893

Gene Structure 26618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTTCTATTGGAGGGTAATAGACGTTTATTGGGGGGCAATACGGGTTTATTCGGGAGGCAATAAACCTCCGGCCCTATATGAGATCTCTGACAACCTCTTTGGTGACTTCCGGCGAGATAATACCAGCCCCGCTGGTTACGGTGGAAATCGGACTAGCCCCACTAGTCAAGCAACGATAAGATATGGGGAAGAGGGTGTAAAGTGTGAAATCAAGCAACTTAAGAATTCAAATTCAACCACAAGTCTTCCATCAAGGTTTAGAATTTTCGACCCAAGGATTCTACCGCCGCCGCCGGCATCGACCTCGGCTTTAGCATCTACAACTGCGACCCCTTCGCAAGATCTTCCACCGCGACTTCGGCCCACGCGGCGCCTTGGATTGGTCAAGATGCTCTTCCGCTACAACGACCTCACCATCGCCGGCGACGGCCCCGACCCCCTCTACTCCCCAACAAGCTACAGTAAGCTTCGTGGCTCAATTCCGAGTTCCTCCGGCCGAGCCACCACAAAACACCACTCCGGGCGTGACAAGGAAGAGGGGCGAGTCTGCTTGGTGCCGGATTCCGTCGTGGGTCTGCCGGAGAAGGAAGAATTCGGGGAAGAAGAAATCGGCCGAAGAGGAAGAAAGGGTCGGGGAAGAGGAAAGAGAAAAGCCGGCTCCAGGTATGAAAGTTGCTCATCTCATCAATATCTACATTCTGGATGGTTGGATCAACTTGGTTTGGAGGTTGATCCGAAGGCGCTCCGGCGGCATGTAAAGCCCATGTCGAGTAACGAGCAACCGTCGTCGAAGCTGAAGTTTCGTTGTCGCCGTAGCTTAGACGTAGAAGTGTACTTTTGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

282

Amino Acids

31.68

Weight (kDa)

9.83

Isoelectric Point (pI)

57.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	372, 556
AccII	CGCG	2 cut(s)	355, 370
AciI	CCGC	8 cut(s)	132, 287, 290, 293, 353, 370, 400, 751
AclWI	GGATC	2 cut(s)	720, 728
AcoI	YGGCCR	2 cut(s)	496, 613
AcsI	RAATTY	4 cut(s)	226, 232, 264, 593
AcuI	CTGAAG	1 cut(s)	818
AcyI	GRCGYC	1 cut(s)	373
AfaI	GTAC	1 cut(s)	836
AfiI	CCNNNNNNNGG	2 cut(s)	382, 663
AflII	CTTAAG	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	231, 237
AhlI	ACTAGT	1 cut(s)	164
AjnI	CCWGG	1 cut(s)	662
AluBI	AGCT	4 cut(s)	459, 469, 796, 819
AluI	AGCT	4 cut(s)	459, 469, 796, 819
AlwI	GGATC	2 cut(s)	720, 728
AoxI	GGCC	5 cut(s)	72, 362, 430, 496, 613
ApoI	RAATTY	4 cut(s)	226, 232, 264, 593
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AspLEI	GCGC	2 cut(s)	375, 745
AspS9I	GGNCC	3 cut(s)	73, 363, 431
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	2 cut(s)	116, 406
BanI	GGYRCC	2 cut(s)	372, 556
BbsI	GAAGAC	1 cut(s)	239
BccI	CCATC	3 cut(s)	259, 425, 699
BceAI	ACGGC	2 cut(s)	445, 798
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciT130I	CCWGG	1 cut(s)	664
BcnI	CCSGG	1 cut(s)	523
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	2 cut(s)	156, 165
BfmI	CTRYAG	1 cut(s)	460
BfoI	RGCGCY	2 cut(s)	376, 746
BfrI	CTTAAG	1 cut(s)	221
BglI	GCCNNNNNGGC	1 cut(s)	370
BglII	AGATCT	2 cut(s)	84, 343
BisI	GCNGC	4 cut(s)	290, 293, 371, 752
BlsI	GCNGC	4 cut(s)	291, 294, 372, 753
Bme1390I	CCNGG	2 cut(s)	523, 664
BmgT120I	GGNCC	3 cut(s)	73, 363, 431
BmiI	GGNNCC	4 cut(s)	374, 433, 558, 661
BmrFI	CCNGG	2 cut(s)	523, 664
BmsI	GCATC	3 cut(s)	308, 326, 381
BpiI	GAAGAC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	646
BpuMI	CCSGG	1 cut(s)	523
BsaHI	GRCGYC	1 cut(s)	373
BsaJI	CCNNGG	3 cut(s)	275, 306, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 663
Bse118I	RCCGGY	3 cut(s)	295, 422, 656
BseBI	CCWGG	1 cut(s)	664
BseDI	CCNNGG	3 cut(s)	275, 306, 376
BseGI	GGATG	1 cut(s)	710
BseLI	CCNNNNNNNGG	2 cut(s)	382, 663
BseX3I	CGGCCG	2 cut(s)	496, 613
Bsh1236I	CGCG	2 cut(s)	355, 370
Bsh1285I	CGRYCG	2 cut(s)	499, 616
BshFI	GGCC	5 cut(s)	74, 364, 432, 498, 615
BshNI	GGYRCC	2 cut(s)	372, 556
BsiEI	CGRYCG	2 cut(s)	499, 616
BslI	CCNNNNNNNGG	2 cut(s)	382, 663
BsnI	GGCC	5 cut(s)	74, 364, 432, 498, 615
Bsp143I	GATC	4 cut(s)	84, 343, 712, 733
BspACI	CCGC	8 cut(s)	132, 287, 290, 293, 353, 370, 400, 751
BspANI	GGCC	5 cut(s)	74, 364, 432, 498, 615
BspFNI	CGCG	2 cut(s)	355, 370
BspLI	GGNNCC	4 cut(s)	374, 433, 558, 661
BspPI	GGATC	2 cut(s)	720, 728
BspQI	GCTCTTC	1 cut(s)	401
BspT107I	GGYRCC	2 cut(s)	372, 556
BspTI	CTTAAG	1 cut(s)	221
BsrFI	RCCGGY	3 cut(s)	295, 422, 656
BssAI	RCCGGY	3 cut(s)	295, 422, 656
BssECI	CCNNGG	3 cut(s)	275, 306, 376
BssMI	GATC	4 cut(s)	84, 343, 712, 733
BssNI	GRCGYC	1 cut(s)	373
BssT1I	CCWWGG	2 cut(s)	275, 376
Bst2UI	CCWGG	1 cut(s)	664
Bst4CI	ACNGT	3 cut(s)	143, 464, 786
Bst6I	CTCTTC	5 cut(s)	186, 401, 531, 613, 634
BstACI	GRCGYC	1 cut(s)	373
BstAFI	CTTAAG	1 cut(s)	221
BstC8I	GCNNGC	3 cut(s)	297, 424, 658
BstDEI	CTNAG	1 cut(s)	820
BstF5I	GGATG	1 cut(s)	710
BstFNI	CGCG	2 cut(s)	355, 370
BstH2I	RGCGCY	2 cut(s)	376, 746
BstHHI	GCGC	2 cut(s)	375, 745
BstKTI	GATC	4 cut(s)	87, 346, 715, 736
BstMBI	GATC	4 cut(s)	84, 343, 712, 733
BstMCI	CGRYCG	2 cut(s)	499, 616
BstMWI	GCNNNNNNNGC	4 cut(s)	361, 370, 751, 760
BstNI	CCWGG	1 cut(s)	664
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	2 cut(s)	521, 662
BstSFI	CTRYAG	1 cut(s)	460
BstUI	CGCG	2 cut(s)	355, 370
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	2 cut(s)	84, 343
BstYI	RGATCY	2 cut(s)	84, 343
BstZI	CGGCCG	2 cut(s)	496, 613
BsuRI	GGCC	5 cut(s)	74, 364, 432, 498, 615
BtgZI	GCGATG	1 cut(s)	403
BtsCI	GGATG	1 cut(s)	710
Cac8I	GCNNGC	3 cut(s)	297, 424, 658
CfoI	GCGC	2 cut(s)	375, 745
Cfr10I	RCCGGY	3 cut(s)	295, 422, 656
Cfr13I	GGNCC	3 cut(s)	73, 363, 431
Csp6I	GTAC	1 cut(s)	835
CviAII	CATG	2 cut(s)	755, 766
CviQI	GTAC	1 cut(s)	835
DdeI	CTNAG	1 cut(s)	820
DinI	GGCGCC	1 cut(s)	374
DpnI	GATC	4 cut(s)	86, 345, 714, 735
DpnII	GATC	4 cut(s)	84, 343, 712, 733
EaeI	YGGCCR	2 cut(s)	496, 613
EagI	CGGCCG	2 cut(s)	496, 613
Eam1104I	CTCTTC	5 cut(s)	186, 401, 531, 613, 634
EarI	CTCTTC	5 cut(s)	186, 401, 531, 613, 634
EclXI	CGGCCG	2 cut(s)	496, 613
Eco130I	CCWWGG	2 cut(s)	275, 376
Eco52I	CGGCCG	2 cut(s)	496, 613
Eco57I	CTGAAG	1 cut(s)	818
EcoRI	GAATTC	2 cut(s)	226, 593
EcoRII	CCWGG	1 cut(s)	662
EcoT14I	CCWWGG	2 cut(s)	275, 376
EgeI	GGCGCC	1 cut(s)	374
EheI	GGCGCC	1 cut(s)	374
ErhI	CCWWGG	2 cut(s)	275, 376
FaeI	CATG	2 cut(s)	758, 769
FaiI	YATR	6 cut(s)	79, 81, 186, 669, 756, 767
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FatI	CATG	2 cut(s)	754, 765
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	4 cut(s)	290, 293, 371, 752
FokI	GGATG	1 cut(s)	717
Fsp4HI	GCNGC	4 cut(s)	290, 293, 371, 752
FspBI	CTAG	2 cut(s)	156, 165
GlaI	GCGC	2 cut(s)	374, 744
GluI	GCNGC	4 cut(s)	290, 293, 371, 752
GsuI	CTGGAG	1 cut(s)	646
HaeII	RGCGCY	2 cut(s)	376, 746
HaeIII	GGCC	5 cut(s)	74, 364, 432, 498, 615
HhaI	GCGC	2 cut(s)	375, 745
Hin1I	GRCGYC	1 cut(s)	373
Hin1II	CATG	2 cut(s)	758, 769
Hin6I	GCGC	2 cut(s)	373, 743
HinP1I	GCGC	2 cut(s)	373, 743
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	3 cut(s)	280, 546, 563
HphI	GGTGA	2 cut(s)	116, 406
Hpy166II	GTNNAC	1 cut(s)	835
Hpy188I	TCNGA	4 cut(s)	91, 153, 486, 738
Hpy188III	TCNNGA	3 cut(s)	54, 388, 702
Hpy8I	GTNNAC	1 cut(s)	835
Hpy99I	CGWCG	4 cut(s)	431, 572, 790, 793
HpyAV	CCTTC	3 cut(s)	345, 580, 733
HpyCH4III	ACNGT	3 cut(s)	143, 464, 786
HpyCH4IV	ACGT	2 cut(s)	24, 825
HpyF10VI	GCNNNNNNNGC	4 cut(s)	361, 370, 751, 760
HpyF3I	CTNAG	1 cut(s)	820
HpySE526I	ACGT	2 cut(s)	24, 825
Hsp92I	GRCGYC	1 cut(s)	373
Hsp92II	CATG	2 cut(s)	758, 769
HspAI	GCGC	2 cut(s)	373, 743
KasI	GGCGCC	1 cut(s)	372
KroI	GCCGGC	3 cut(s)	295, 422, 656
KroNI	GCCGGC	3 cut(s)	297, 424, 658
Kzo9I	GATC	4 cut(s)	84, 343, 712, 733
LguI	GCTCTTC	1 cut(s)	401
LmnI	GCTCC	2 cut(s)	665, 750
LweI	GCATC	3 cut(s)	308, 326, 381
MaeI	CTAG	2 cut(s)	156, 165
MaeII	ACGT	2 cut(s)	24, 825
MaeIII	GTNAC	4 cut(s)	104, 137, 527, 773
MalI	GATC	4 cut(s)	86, 345, 714, 735
MboI	GATC	4 cut(s)	84, 343, 712, 733
MflI	RGATCY	2 cut(s)	84, 343
MluCI	AATT	5 cut(s)	226, 232, 264, 480, 593
Mly113I	GGCGCC	1 cut(s)	373
MlyI	GAGTC	1 cut(s)	555
MmeI	TCCRAC	1 cut(s)	690
MreI	CGCCGGCG	1 cut(s)	422
MroNI	GCCGGC	3 cut(s)	295, 422, 656
MseI	TTAA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	134
MspCI	CTTAAG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	523, 664
MvaI	CCWGG	1 cut(s)	664
MvnI	CGCG	2 cut(s)	355, 370
MwoI	GCNNNNNNNGC	4 cut(s)	361, 370, 751, 760
NaeI	GCCGGC	3 cut(s)	297, 424, 658
NarI	GGCGCC	1 cut(s)	373
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	4 cut(s)	84, 343, 712, 733
NgoMIV	GCCGGC	3 cut(s)	295, 422, 656
NlaIII	CATG	2 cut(s)	758, 769
NlaIV	GGNNCC	4 cut(s)	374, 433, 558, 661
NmeAIII	GCCGAG	2 cut(s)	287, 524
NmuCI	GTSAC	2 cut(s)	104, 527
NspI	RCATGY	1 cut(s)	758
PciSI	GCTCTTC	1 cut(s)	401
PcsI	WCGNNNNNNNCGW	1 cut(s)	811
PdiI	GCCGGC	3 cut(s)	297, 424, 658
PfeI	GAWTC	2 cut(s)	280, 563
PkrI	GCNGC	4 cut(s)	291, 294, 372, 753
PleI	GAGTC	1 cut(s)	554
PluTI	GGCGCC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	662
PspGI	CCWGG	1 cut(s)	662
PspN4I	GGNNCC	4 cut(s)	374, 433, 558, 661
PspPI	GGNCC	3 cut(s)	73, 363, 431
PsuI	RGATCY	2 cut(s)	84, 343
RsaI	GTAC	1 cut(s)	836
RsaNI	GTAC	1 cut(s)	835
SapI	GCTCTTC	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	4 cut(s)	290, 293, 371, 752
Sau3AI	GATC	4 cut(s)	84, 343, 712, 733
Sau96I	GGNCC	3 cut(s)	73, 363, 431
SchI	GAGTC	1 cut(s)	555
ScrFI	CCNGG	2 cut(s)	523, 664
SfaNI	GCATC	3 cut(s)	308, 326, 381
SfcI	CTRYAG	1 cut(s)	460
SfoI	GGCGCC	1 cut(s)	374
SgrAI	CRCCGGYG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	5 cut(s)	226, 232, 264, 480, 593
SsiI	CCGC	8 cut(s)	132, 287, 290, 293, 353, 370, 400, 751
SspDI	GGCGCC	1 cut(s)	372
SspMI	CTAG	2 cut(s)	156, 165
StyD4I	CCNGG	2 cut(s)	521, 662
StyI	CCWWGG	2 cut(s)	275, 376
TaaI	ACNGT	3 cut(s)	143, 464, 786
TaiI	ACGT	2 cut(s)	27, 828
TaqI	TCGA	4 cut(s)	270, 302, 770, 791
TasI	AATT	5 cut(s)	226, 232, 264, 480, 593
TatI	WGTACW	1 cut(s)	834
TauI	GCSGC	4 cut(s)	292, 295, 373, 754
TfiI	GAWTC	2 cut(s)	280, 563
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseFI	GTSAC	2 cut(s)	104, 527
Tsp45I	GTSAC	2 cut(s)	104, 527
TspDTI	ATGAA	1 cut(s)	684
TspGWI	ACGGA	1 cut(s)	556
Vha464I	CTTAAG	1 cut(s)	221
XapI	RAATTY	4 cut(s)	226, 232, 264, 593
XceI	RCATGY	1 cut(s)	758
XspI	CTAG	2 cut(s)	156, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.