Rw3G027320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002742
Physical Location & Seq
Forward (+)
38541742 .. 38541975
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G027320.1

Sequence Viewer

Length: 234 bp
ATGACTGGTGGTATTGGAATTCCAATATGCGTGCAGTGCGGAACGCACAGCAACCCATGCCGGTGCAAGGTGGTTGGCCCTACCTTGGGGTTCCTGGCCTTCGCCGCGGCGGCGATCGTGGAGTGGCCTGTGGGGGCTCTTGTCTACTGCTTCCGCCACATGAAGGGTCGCCGAATTATGGCTCATCCGGCCACCGTTGTTTACCCCAAAGTTACCAATTCTATTCCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.2

Weight (kDa)

9.5

Isoelectric Point (pI)

4.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 107
AciI CCGC 5 cut(s) 39, 105, 107, 110, 154
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 1 cut(s) 18
AfiI CCNNNNNNNGG 5 cut(s) 67, 85, 86, 163, 178
AjnI CCWGG 1 cut(s) 93
AoxI GGCC 4 cut(s) 76, 96, 125, 189
ApoI RAATTY 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 77
BanII GRGCYC 1 cut(s) 139
BciT130I CCWGG 1 cut(s) 95
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 3 cut(s) 105, 108, 111
BlsI GCNGC 3 cut(s) 106, 109, 112
Bme1390I CCNGG 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 84, 105
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 85, 86, 163, 178
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 10
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 84, 105
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 5 cut(s) 67, 85, 86, 163, 178
BseNI ACTGG 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 4 cut(s) 78, 98, 127, 191
BsiEI CGRYCG 1 cut(s) 117
BsiSI CCGG 2 cut(s) 61, 188
BslI CCNNNNNNNGG 5 cut(s) 67, 85, 86, 163, 178
BsnI GGCC 4 cut(s) 78, 98, 127, 191
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 5 cut(s) 39, 105, 107, 110, 154
BspANI GGCC 4 cut(s) 78, 98, 127, 191
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 60
BsrI ACTGG 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 84, 105
BssMI GATC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 107
BstKTI GATC 1 cut(s) 117
BstMBI GATC 1 cut(s) 114
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 5 cut(s) 36, 57, 104, 110, 188
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstUI CGCG 1 cut(s) 107
BsuRI GGCC 4 cut(s) 78, 98, 127, 191
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 77
Cfr42I CCGCGG 1 cut(s) 108
CviAII CATG 2 cut(s) 57, 160
CviJI RGCY 6 cut(s) 78, 98, 127, 137, 182, 191
CviKI_1 RGCY 6 cut(s) 78, 98, 127, 137, 182, 191
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 189
EciI GGCGGA 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 2 cut(s) 60, 163
FaiI YATR 4 cut(s) 28, 58, 161, 179
FatI CATG 2 cut(s) 56, 159
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 105, 108, 111
FokI GGATG 1 cut(s) 171
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 3 cut(s) 105, 108, 111
GluI GCNGC 3 cut(s) 105, 108, 111
HaeIII GGCC 4 cut(s) 78, 98, 127, 191
HapII CCGG 2 cut(s) 61, 188
Hin1II CATG 2 cut(s) 60, 163
HpaII CCGG 2 cut(s) 61, 188
Hpy166II GTNNAC 2 cut(s) 145, 202
Hpy8I GTNNAC 2 cut(s) 145, 202
HpyAV CCTTC 2 cut(s) 109, 157
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 34, 66
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 57, 104, 110, 188
Hsp92II CATG 2 cut(s) 60, 163
KspI CCGCGG 1 cut(s) 108
Kzo9I GATC 1 cut(s) 114
LpnPI CCDG 5 cut(s) 74, 80, 107, 141, 201
MaeIII GTNAC 1 cut(s) 211
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 3 cut(s) 18, 174, 217
MslI CAYNNNNRTG 1 cut(s) 61
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 2 cut(s) 61, 188
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 5 cut(s) 36, 57, 104, 110, 188
NdeII GATC 1 cut(s) 114
NlaIII CATG 2 cut(s) 60, 163
NlaIV GGNNCC 1 cut(s) 92
PkrI GCNGC 3 cut(s) 106, 109, 112
Ple19I CGATCG 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 77
PvuI CGATCG 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 61
SacII CCGCGG 1 cut(s) 108
SatI GCNGC 3 cut(s) 105, 108, 111
Sau3AI GATC 1 cut(s) 114
Sau96I GGNCC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 139
SetI ASST 2 cut(s) 72, 86
Sfr303I CCGCGG 1 cut(s) 108
SgrBI CCGCGG 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 61
Sse9I AATT 3 cut(s) 18, 174, 217
SsiI CCGC 5 cut(s) 39, 105, 107, 110, 154
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 196
TasI AATT 3 cut(s) 18, 174, 217
TauI GCSGC 3 cut(s) 107, 110, 113
TscAI CASTG 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 176
TspRI CASTG 1 cut(s) 41
XapI RAATTY 1 cut(s) 18
XmiI GTMKAC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.