Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004550.1

Orthogroup ID

OG0002742

Physical Location & Seq

Genomic Coordinates Forward (+)

13983 .. 16520

Gene Structure 2538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004550.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgcttaagcatattgacaaggtcaaaccttcaagcacccccatgatcatccgtagtcttgatcttaaaaaggaccctattcgtctgaaggatgatgacgaagatgtgctagaagtagaagtgtcttacttgagtacaataggagcattattgtacttagctcaatgcacaggtccggacatctcatttgcagtgaacttgttagctaagtgcggaacgcgcagcaacccctgccggtgcaaggtggtgggccctaccttgggggtcctggccttcgccgtggcggcgatcgtggaatggcctgtgggggctgttgtctacttgttccgccacacgaagggtcgccgaatcatgggtcatccgtccactgttgtttaccccaaggtttctaattccattcccatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.75

Weight (kDa)

9.14

Isoelectric Point (pI)

19.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03341
fragaria_vesca	FvH4_5g32381
malus_domestica	MD09G1261500.v1.1
prunus_persica	Prupe.3G158900_v2.0.a1 Prupe.6G002100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0370661
rosa_laevigata	RLG00000015816 RLG00000018873
rosa_multiflora	Rmu_sc0000555.1_g000021 Rmu_sc0001669.1_g000050 Rmu_sc0001863.1_g000019 Rmu_sc0002343.1_g000054 Rmu_sc0004424.1_g000010 Rmu_sc0004550.1_g000007 Rmu_sc0005832.1_g000002 Rmu_sc0007137.1_g000013 Rmu_sc0010065.1_g000013 Rmu_sc0010969.1_g000011 Rmu_sc0039881.1_g000001 Rmu_ssc0000372.1_g000044
rosa_roxburghii	Rroxscaffold_152G00434700 Rroxscaffold_1G00026520 Rroxscaffold_3G00239240 Rroxscaffold_3G00249000 Rroxscaffold_4G00286340 Rroxscaffold_4G00318500 Rroxscaffold_6G00390230 Rroxscaffold_6G00391860 Rroxscaffold_6G00391900 Rroxscaffold_6G00423860 Rroxscaffold_7G00193330
rosa_rugosa	Rorug03G0261800
rosa_samantha	Rh1AG367900 Rh1BG331400 Rh3AG255200 Rh3CG290000 Rh7BG354000
rosa_wichuraiana	Rw1G032370 Rw3G027320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	1 cut(s)	220
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	3 cut(s)	213, 284, 328
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	2 cut(s)	136, 155
AfiI	CCNNNNNNNGG	5 cut(s)	241, 259, 260, 337, 352
AflII	CTTAAG	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	33
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	2 cut(s)	161, 206
AluI	AGCT	2 cut(s)	161, 206
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	3 cut(s)	250, 270, 299
ApaI	GGGCCC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	222
ArsI	GACNNNNNNTTYG	4 cut(s)	170, 202, 340, 372
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	5 cut(s)	73, 173, 250, 251, 265
AvaII	GGWCC	3 cut(s)	73, 173, 265
BaeGI	GKGCMC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	234
BceAI	ACGGC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	269
BclI	TGATCA	1 cut(s)	45
BfaI	CTAG	1 cut(s)	110
BfrI	CTTAAG	1 cut(s)	5
BglI	GCCNNNNNGGC	1 cut(s)	284
BisI	GCNGC	2 cut(s)	223, 285
BlsI	GCNGC	2 cut(s)	224, 286
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	3 cut(s)	73, 173, 265
BmgT120I	GGNCC	5 cut(s)	73, 173, 250, 251, 265
BmiI	GGNNCC	3 cut(s)	75, 252, 266
BmrFI	CCNGG	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	151
BsaJI	CCNNGG	3 cut(s)	258, 279, 381
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	5 cut(s)	241, 259, 260, 337, 352
Bse118I	RCCGGY	1 cut(s)	234
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	258, 279, 381
BseGI	GGATG	3 cut(s)	48, 97, 358
BseLI	CCNNNNNNNGG	5 cut(s)	241, 259, 260, 337, 352
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	220
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	3 cut(s)	252, 272, 301
BsiEI	CGRYCG	1 cut(s)	291
BsiSI	CCGG	2 cut(s)	176, 235
BslI	CCNNNNNNNGG	5 cut(s)	241, 259, 260, 337, 352
BsnI	GGCC	3 cut(s)	252, 272, 301
Bsp120I	GGGCCC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	45, 61, 288
BspACI	CCGC	3 cut(s)	213, 284, 328
BspANI	GGCC	3 cut(s)	252, 272, 301
BspEI	TCCGGA	1 cut(s)	175
BspFNI	CGCG	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	75, 252, 266
BspTI	CTTAAG	1 cut(s)	5
BsrFI	RCCGGY	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	3 cut(s)	258, 279, 381
BssMI	GATC	3 cut(s)	45, 61, 288
BssT1I	CCWWGG	2 cut(s)	258, 381
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	370
BstAFI	CTTAAG	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	157, 207
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	3 cut(s)	48, 97, 358
BstFNI	CGCG	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	3 cut(s)	48, 64, 291
BstMBI	GATC	3 cut(s)	45, 61, 288
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 231, 284
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	254
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	234
BsuRI	GGCC	3 cut(s)	252, 272, 301
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	3 cut(s)	48, 97, 358
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 366
CfoI	GCGC	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	5 cut(s)	73, 173, 250, 251, 265
Csp6I	GTAC	2 cut(s)	135, 154
CviAII	CATG	2 cut(s)	43, 352
CviJI	RGCY	6 cut(s)	161, 206, 252, 272, 301, 311
CviKI_1	RGCY	6 cut(s)	161, 206, 252, 272, 301, 311
CviQI	GTAC	2 cut(s)	135, 154
DdeI	CTNAG	2 cut(s)	157, 207
DpnI	GATC	3 cut(s)	47, 63, 290
DpnII	GATC	3 cut(s)	45, 61, 288
EciI	GGCGGA	1 cut(s)	317
Eco130I	CCWWGG	2 cut(s)	258, 381
Eco24I	GRGCYC	1 cut(s)	254
Eco47I	GGWCC	3 cut(s)	73, 173, 265
Eco57I	CTGAAG	1 cut(s)	107
EcoO109I	RGGNCCY	3 cut(s)	73, 251, 265
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	258, 381
EcoT38I	GRGCYC	1 cut(s)	254
ErhI	CCWWGG	2 cut(s)	258, 381
FaeI	CATG	2 cut(s)	46, 355
FaiI	YATR	5 cut(s)	12, 44, 353, 404, 406
FatI	CATG	2 cut(s)	42, 351
FauNDI	CATATG	1 cut(s)	404
FbaI	TGATCA	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	223, 285
FokI	GGATG	3 cut(s)	35, 104, 345
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	223, 285
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	2 cut(s)	223, 285
HaeIII	GGCC	3 cut(s)	252, 272, 301
HapII	CCGG	2 cut(s)	176, 235
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	46, 355
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	348
HpaII	CCGG	2 cut(s)	176, 235
Hpy166II	GTNNAC	4 cut(s)	196, 319, 366, 376
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	2 cut(s)	59, 176
Hpy8I	GTNNAC	4 cut(s)	196, 319, 366, 376
HpyAV	CCTTC	4 cut(s)	39, 82, 283, 331
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4V	TGCA	3 cut(s)	168, 191, 240
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 231, 284
HpyF3I	CTNAG	2 cut(s)	157, 207
Hsp92II	CATG	2 cut(s)	46, 355
HspAI	GCGC	1 cut(s)	220
Kpn2I	TCCGGA	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	45, 61, 288
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	7 cut(s)	156, 189, 244, 248, 254, 281, 315
Lsp1109I	GCAGC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	110
MalI	GATC	3 cut(s)	47, 63, 290
MboI	GATC	3 cut(s)	45, 61, 288
MboII	GAAGA	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	1 cut(s)	391
MroI	TCCGGA	1 cut(s)	175
MseI	TTAA	2 cut(s)	6, 66
MslI	CAYNNNNRTG	1 cut(s)	41
MspCI	CTTAAG	1 cut(s)	5
MspI	CCGG	2 cut(s)	176, 235
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	3 cut(s)	219, 231, 284
NdeI	CATATG	1 cut(s)	404
NdeII	GATC	3 cut(s)	45, 61, 288
NlaIII	CATG	2 cut(s)	46, 355
NlaIV	GGNNCC	3 cut(s)	75, 252, 266
PfeI	GAWTC	1 cut(s)	348
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	224, 286
Ple19I	CGATCG	1 cut(s)	291
PpuMI	RGGWCCY	2 cut(s)	73, 265
Psp5II	RGGWCCY	2 cut(s)	73, 265
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	75, 252, 266
PspOMI	GGGCCC	1 cut(s)	250
PspPI	GGNCC	5 cut(s)	73, 173, 250, 251, 265
PspPPI	RGGWCCY	2 cut(s)	73, 265
PsyI	GACNNNGTC	1 cut(s)	20
PvuI	CGATCG	1 cut(s)	291
RsaI	GTAC	2 cut(s)	136, 155
RsaNI	GTAC	2 cut(s)	135, 154
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	6, 66
SatI	GCNGC	2 cut(s)	223, 285
Sau3AI	GATC	3 cut(s)	45, 61, 288
Sau96I	GGNCC	5 cut(s)	73, 173, 250, 251, 265
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	8 cut(s)	24, 31, 163, 175, 208, 246, 260, 387
SinI	GGWCC	3 cut(s)	73, 173, 265
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	5, 130
SmoI	CTYRAG	2 cut(s)	5, 130
Sse9I	AATT	1 cut(s)	391
SsiI	CCGC	3 cut(s)	213, 284, 328
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	2 cut(s)	258, 381
TaaI	ACNGT	1 cut(s)	370
TasI	AATT	1 cut(s)	391
TatI	WGTACW	2 cut(s)	134, 153
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	348
Tru1I	TTAA	2 cut(s)	6, 66
Tru9I	TTAA	2 cut(s)	6, 66
TscAI	CASTG	2 cut(s)	198, 373
TseI	GCWGC	1 cut(s)	222
TspGWI	ACGGA	2 cut(s)	41, 351
TspRI	CASTG	2 cut(s)	198, 373
Tth111I	GACNNNGTC	1 cut(s)	20
Vha464I	CTTAAG	1 cut(s)	5
VpaK11BI	GGWCC	3 cut(s)	73, 173, 265
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.