MD01G1017800.v1.1

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000388
Physical Location & Seq
Reverse (-)
7778870 .. 7779754
885 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1017800.v1.1.491

Sequence Viewer

Length: 489 bp
ATGGACAGAATTAGCAGTGCGGGGCTGGAACTAGCAAATGTGCTGGTGACTTCTCCTCCCCTGCACCAGTCATGGGACGCAATTCAGAAGCAAAAGCTCCAGACAGCTGCTGATCCGAATGCACAAATGGCCTTATACATTAGTGAAACCAAGCACTCAAACACCACCATCATATCTTTTCTTACTTCACCAGTCAAGGTTCAAGATCCACAAGCGATGATTTCATCGACGACTCTCAAGGGCACAAATTTTCTTCTCTTTGAGTTTTTGTGCAGCAAAAAAACACCAAGTTACTCCATCAATGAATTGGCAATCAAATTCTTCGCCTTGAATCACACCAACCTCGATCTTCTGCAAACAAAGCTGGTAGAAAGCAGCAATTCCAACTCATCGATACTTATCACTGGACATTCTTTTGGAGGCTGTTTAGCTACCCTTTTCACCTTATGGCTGCTACAAAGCCTCAACTTGTCTTATCTATATCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

163

Amino Acids

17.9

Weight (kDa)

6.95

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 97 - 154 1.5e-07 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 20
AclWI GGATC 2 cut(s) 107, 200
AcsI RAATTY 2 cut(s) 247, 317
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 203, 331
AluBI AGCT 4 cut(s) 97, 107, 364, 431
AluI AGCT 4 cut(s) 97, 107, 364, 431
AlwI GGATC 2 cut(s) 107, 200
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 4 cut(s) 107, 273, 375, 451
ApoI RAATTY 2 cut(s) 247, 317
AsuHPI GGTGA 3 cut(s) 58, 180, 433
BaeGI GKGCMC 1 cut(s) 245
BbvI GCAGC 4 cut(s) 94, 285, 387, 438
BccI CCATC 2 cut(s) 176, 305
BfaI CTAG 1 cut(s) 32
BisI GCNGC 4 cut(s) 108, 274, 376, 452
BlsI GCNGC 4 cut(s) 109, 275, 377, 453
BpmI CTGGAG 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 221
Bsa29I ATCGAT 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 398
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 3 cut(s) 67, 191, 409
Bse8I GATNNNNATC 1 cut(s) 398
BseCI ATCGAT 1 cut(s) 392
BseJI GATNNNNATC 1 cut(s) 398
BseLI CCNNNNNNNGG 1 cut(s) 73
BseNI ACTGG 3 cut(s) 67, 191, 409
BseRI GAGGAG 1 cut(s) 45
BseSI GKGCMC 1 cut(s) 245
BseXI GCAGC 4 cut(s) 94, 285, 387, 438
BsgI GTGCAG 2 cut(s) 47, 292
BshFI GGCC 1 cut(s) 131
BshVI ATCGAT 1 cut(s) 392
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 89
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 3 cut(s) 112, 205, 346
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 131
BspDI ATCGAT 1 cut(s) 392
BspPI GGATC 2 cut(s) 107, 200
BsrI ACTGG 3 cut(s) 67, 191, 409
BssMI GATC 3 cut(s) 112, 205, 346
BstKTI GATC 3 cut(s) 115, 208, 349
BstMBI GATC 3 cut(s) 112, 205, 346
BstMWI GCNNNNNNNGC 2 cut(s) 128, 361
BstSLI GKGCMC 1 cut(s) 245
BstV1I GCAGC 4 cut(s) 94, 285, 387, 438
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
Bsu15I ATCGAT 1 cut(s) 392
BsuRI GGCC 1 cut(s) 131
BsuTUI ATCGAT 1 cut(s) 392
BtgZI GCGATG 1 cut(s) 230
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 2 cut(s) 22, 402
CaiI CAGNNNCTG 1 cut(s) 110
ClaI ATCGAT 1 cut(s) 392
CseI GACGC 1 cut(s) 86
CviAII CATG 1 cut(s) 72
CviJI RGCY 9 cut(s) 25, 97, 107, 131, 364, 423, 431, 451, 462
CviKI_1 RGCY 9 cut(s) 25, 97, 107, 131, 364, 423, 431, 451, 462
DpnI GATC 3 cut(s) 114, 207, 348
DpnII GATC 3 cut(s) 112, 205, 346
FaeI CATG 1 cut(s) 75
FaiI YATR 5 cut(s) 73, 136, 173, 448, 481
FaqI GGGAC 1 cut(s) 89
FatI CATG 1 cut(s) 71
FauI CCCGC 1 cut(s) 13
Fnu4HI GCNGC 4 cut(s) 108, 274, 376, 452
Fsp4HI GCNGC 4 cut(s) 108, 274, 376, 452
FspBI CTAG 1 cut(s) 32
GluI GCNGC 4 cut(s) 108, 274, 376, 452
GsuI CTGGAG 1 cut(s) 83
HaeIII GGCC 1 cut(s) 131
HgaI GACGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 75
HinfI GANTC 2 cut(s) 232, 331
HphI GGTGA 3 cut(s) 58, 180, 433
Hpy188I TCNGA 2 cut(s) 87, 117
Hpy188III TCNNGA 2 cut(s) 100, 203
Hpy99I CGWCG 1 cut(s) 232
HpyCH4V TGCA 4 cut(s) 64, 122, 273, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 361
Hsp92II CATG 1 cut(s) 75
Kzo9I GATC 3 cut(s) 112, 205, 346
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 8 cut(s) 11, 29, 74, 80, 113, 204, 350, 390
Lsp1109I GCAGC 4 cut(s) 94, 285, 387, 438
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 2 cut(s) 46, 290
MalI GATC 3 cut(s) 114, 207, 348
MboI GATC 3 cut(s) 112, 205, 346
MboII GAAGA 3 cut(s) 245, 313, 341
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 6 cut(s) 9, 81, 247, 305, 317, 379
MlyI GAGTC 1 cut(s) 226
MmeI TCCRAC 1 cut(s) 408
MnlI CCTC 4 cut(s) 66, 353, 413, 473
MseI TTAA 1 cut(s) 487
MspA1I CMGCKG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 128, 361
NdeII GATC 3 cut(s) 112, 205, 346
NlaIII CATG 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 46
PctI GAATGC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 4 cut(s) 109, 275, 377, 453
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 110
PsuI RGATCY 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 107
SaqAI TTAA 1 cut(s) 487
SatI GCNGC 4 cut(s) 108, 274, 376, 452
Sau3AI GATC 3 cut(s) 112, 205, 346
SchI GAGTC 1 cut(s) 226
SduI GDGCHC 1 cut(s) 245
SetI ASST 7 cut(s) 99, 109, 201, 345, 366, 433, 446
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 6 cut(s) 9, 81, 247, 305, 317, 379
SsiI CCGC 1 cut(s) 20
SspMI CTAG 1 cut(s) 32
TaqI TCGA 3 cut(s) 227, 345, 392
TasI AATT 6 cut(s) 9, 81, 247, 305, 317, 379
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 1 cut(s) 487
Tru9I TTAA 1 cut(s) 487
TscAI CASTG 2 cut(s) 22, 409
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 4 cut(s) 107, 273, 375, 451
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 213, 318
TspRI CASTG 2 cut(s) 22, 409
XapI RAATTY 2 cut(s) 247, 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.