Rorug07G0186000

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000388
Physical Location & Seq
Forward (+)
15663635 .. 15664490
856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0186000.1

Sequence Viewer

Length: 756 bp
ATGAGTGAGCCTTCTACGACTCCTACCGCCAGACCTACGCTGTGCCAGAGGCTTTCAACCCGGACCTCGAAGCCGCCTTCGACAACATCAATTTCAACGGTTACTCCGACTCCGGCCGCGGCTTTTATAAGGTCTACTCCGACGTTTTCGACAGGATTTACGGCAATGAGCGTGCTTTTCATGAAAAGAATGACCCGCCGTGGGGTTCTGTTCACAACCCTCCGCGCATGGGAAATCTGGACAGCCCGTCTCCCGCAGAAGAGTAAAGCTGTGGTCCGCCTAAACATGAAAGCTAGGAAGAAGGCCAAGAAGGAGTACAACAACAAGGTGCGGAGTTTGGCACAAAATGCCAAGAGGCTTGACAGGAGGGTCATGCAGATGACGGCGAAGACGGAGGAGGAGAGAAAGAGGGAGATGGAAGAGGAGAGGGAGAGGAGGAAGCGGTTAAAGAAAGAGAAGTTGGAGAAGGCTGCTAGGGAGTATGAGGAGCCGGAGTGGACCAAAGTGGTTGAGAGGAGGAGAAAATATGGTGATCCTGCGAAGGAGAAGGTTAAGAGAGAGATAGAGGAATGGGAGTGTGTTGTTTGTAGGAAGGGATTTAGGAGTGAGAAGCAGTGCAGAAATCACGAGCAGTCGAAGAAGCACCTTCGTATGGTTTCAGAGTTAATAGAGTTATTGCAATCTAACCATCGTGAAATTGTTGTTGAGTCCACTACTAGAAATCTGGCTATAGGACACCATCCAGTATTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

251

Amino Acids

29.51

Weight (kDa)

10.46

Isoelectric Point (pI)

66.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_jaz PF12171 191 - 215 2.6e-07 Zinc-finger double-stranded RNA-binding
zf-met PF12874 191 - 215 7.3e-07 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AasI GACNNNNNNGTC 1 cut(s) 368
AccI GTMKAC 1 cut(s) 134
AccII CGCG 2 cut(s) 119, 225
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 1 cut(s) 114
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 4 cut(s) 201, 202, 229, 652
AgsI TTSAA 2 cut(s) 57, 96
AhdI GACNNNNNGTC 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AluBI AGCT 2 cut(s) 269, 293
AluI AGCT 2 cut(s) 269, 293
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 527
AoxI GGCC 2 cut(s) 114, 303
ApeKI GCWGC 1 cut(s) 470
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 3 cut(s) 63, 274, 498
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 542
AvaII GGWCC 3 cut(s) 63, 274, 498
BauI CACGAG 1 cut(s) 626
BbsI GAAGAC 1 cut(s) 395
BbvI GCAGC 1 cut(s) 457
BccI CCATC 3 cut(s) 409, 696, 747
BceAI ACGGC 3 cut(s) 177, 183, 399
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 3 cut(s) 294, 474, 717
BfmI CTRYAG 1 cut(s) 729
BisI GCNGC 4 cut(s) 74, 117, 120, 471
BlsI GCNGC 4 cut(s) 75, 118, 121, 472
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 3 cut(s) 63, 274, 498
BmeRI GACNNNNNGTC 1 cut(s) 246
BmgT120I GGNCC 3 cut(s) 63, 274, 498
BmiI GGNNCC 1 cut(s) 489
BmrFI CCNGG 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 117, 199
BsaXI ACNNNNNCTCC 6 cut(s) 88, 94, 118, 124, 479, 509
Bsc4I CCNNNNNNNGG 4 cut(s) 201, 202, 229, 652
Bse1I ACTGG 1 cut(s) 743
Bse3DI GCAATG 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 117, 199
BseGI GGATG 1 cut(s) 739
BseLI CCNNNNNNNGG 4 cut(s) 201, 202, 229, 652
BseMI GCAATG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 743
BseRI GAGGAG 7 cut(s) 410, 413, 437, 448, 500, 529, 532
BseX3I CGGCCG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 457
BsgI GTGCAG 1 cut(s) 637
Bsh1236I CGCG 2 cut(s) 119, 225
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 2 cut(s) 116, 305
BsiEI CGRYCG 1 cut(s) 117
BsiSI CCGG 3 cut(s) 61, 113, 491
BslI CCNNNNNNNGG 4 cut(s) 201, 202, 229, 652
BsmAI GTCTC 1 cut(s) 254
BsmBI CGTCTC 1 cut(s) 254
BsnI GGCC 2 cut(s) 116, 305
Bsp143I GATC 1 cut(s) 532
BspANI GGCC 2 cut(s) 116, 305
BspFNI CGCG 2 cut(s) 119, 225
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 489
BspPI GGATC 1 cut(s) 527
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 1 cut(s) 743
BssECI CCNNGG 2 cut(s) 117, 199
BssMI GATC 1 cut(s) 532
BssSI CACGAG 1 cut(s) 626
Bst2BI CACGAG 1 cut(s) 626
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 2 cut(s) 254, 414
BstAPI GCANNNNNTGC 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 173
BstDSI CCRYGG 2 cut(s) 117, 199
BstF5I GGATG 1 cut(s) 739
BstFNI CGCG 2 cut(s) 119, 225
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 1 cut(s) 535
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 1 cut(s) 532
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 729
BstUI CGCG 2 cut(s) 119, 225
BstV1I GCAGC 1 cut(s) 457
BstV2I GAAGAC 1 cut(s) 395
BstZI CGGCCG 1 cut(s) 114
BsuRI GGCC 2 cut(s) 116, 305
BtgI CCRYGG 2 cut(s) 117, 199
BtsCI GGATG 1 cut(s) 739
BtsI GCAGTG 1 cut(s) 620
BtsIMutI CAGTG 1 cut(s) 620
Cac8I GCNNGC 1 cut(s) 173
CciI TCATGA 1 cut(s) 180
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 63, 274, 498
Cfr42I CCGCGG 1 cut(s) 120
Csp6I GTAC 1 cut(s) 316
CviAII CATG 4 cut(s) 181, 228, 286, 373
CviQI GTAC 1 cut(s) 316
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
DrdI GACNNNNNNGTC 1 cut(s) 368
DriI GACNNNNNGTC 1 cut(s) 246
DseDI GACNNNNNNGTC 1 cut(s) 368
EaeI YGGCCR 1 cut(s) 114
EagI CGGCCG 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 254, 414
Eam1105I GACNNNNNGTC 1 cut(s) 246
EarI CTCTTC 2 cut(s) 254, 414
EciI GGCGGA 1 cut(s) 266
EclXI CGGCCG 1 cut(s) 114
Eco47I GGWCC 3 cut(s) 63, 274, 498
Eco52I CGGCCG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 4 cut(s) 184, 231, 289, 376
FaiI YATR 9 cut(s) 128, 182, 229, 287, 374, 483, 528, 653, 731
FatI CATG 4 cut(s) 180, 227, 285, 372
FauI CCCGC 2 cut(s) 203, 261
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 4 cut(s) 74, 117, 120, 471
FokI GGATG 1 cut(s) 726
Fsp4HI GCNGC 4 cut(s) 74, 117, 120, 471
FspBI CTAG 3 cut(s) 294, 474, 717
GlaI GCGC 1 cut(s) 226
GluI GCNGC 4 cut(s) 74, 117, 120, 471
HaeIII GGCC 2 cut(s) 116, 305
HapII CCGG 3 cut(s) 61, 113, 491
HhaI GCGC 1 cut(s) 227
Hin1II CATG 4 cut(s) 184, 231, 289, 376
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 3 cut(s) 19, 109, 707
HpaII CCGG 3 cut(s) 61, 113, 491
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 4 cut(s) 135, 213, 498, 711
Hpy188I TCNGA 3 cut(s) 108, 141, 661
Hpy188III TCNNGA 4 cut(s) 181, 238, 626, 692
Hpy8I GTNNAC 4 cut(s) 135, 213, 498, 711
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 9 cut(s) 21, 87, 295, 304, 460, 535, 541, 586, 656
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 3 cut(s) 376, 618, 679
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 4 cut(s) 184, 231, 289, 376
HspAI GCGC 1 cut(s) 225
KspI CCGCGG 1 cut(s) 120
Kzo9I GATC 1 cut(s) 532
LmnI GCTCC 1 cut(s) 487
Lsp1109I GCAGC 1 cut(s) 457
MaeI CTAG 3 cut(s) 294, 474, 717
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 534
MboI GATC 1 cut(s) 532
MboII GAAGA 5 cut(s) 271, 310, 400, 431, 649
MluCI AATT 2 cut(s) 90, 696
MlyI GAGTC 3 cut(s) 13, 103, 716
MmeI TCCRAC 3 cut(s) 131, 164, 441
MseI TTAA 3 cut(s) 446, 552, 665
MslI CAYNNNNRTG 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 3 cut(s) 61, 113, 491
MspR9I CCNGG 1 cut(s) 61
MvnI CGCG 2 cut(s) 119, 225
MwoI GCNNNNNNNGC 1 cut(s) 347
NciI CCSGG 1 cut(s) 61
NdeII GATC 1 cut(s) 532
NlaIII CATG 4 cut(s) 184, 231, 289, 376
NlaIV GGNNCC 1 cut(s) 489
PagI TCATGA 1 cut(s) 180
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PkrI GCNGC 4 cut(s) 75, 118, 121, 472
PleI GAGTC 3 cut(s) 13, 103, 715
PpsI GAGTC 3 cut(s) 13, 103, 715
PsiI TTATAA 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 489
PspPI GGNCC 3 cut(s) 63, 274, 498
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 377
SacII CCGCGG 1 cut(s) 120
SaqAI TTAA 3 cut(s) 446, 552, 665
SatI GCNGC 4 cut(s) 74, 117, 120, 471
Sau3AI GATC 1 cut(s) 532
Sau96I GGNCC 3 cut(s) 63, 274, 498
SchI GAGTC 3 cut(s) 13, 103, 716
ScrFI CCNGG 1 cut(s) 61
SetI ASST 9 cut(s) 37, 68, 134, 146, 271, 295, 330, 552, 648
SfcI CTRYAG 1 cut(s) 729
Sfr303I CCGCGG 1 cut(s) 120
SgrBI CCGCGG 1 cut(s) 120
SinI GGWCC 3 cut(s) 63, 274, 498
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 2 cut(s) 90, 696
SspMI CTAG 3 cut(s) 294, 474, 717
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 1 cut(s) 146
TaqI TCGA 4 cut(s) 68, 80, 149, 635
TasI AATT 2 cut(s) 90, 696
TatI WGTACW 1 cut(s) 315
TauI GCSGC 3 cut(s) 76, 119, 122
Tru1I TTAA 3 cut(s) 446, 552, 665
Tru9I TTAA 3 cut(s) 446, 552, 665
TscAI CASTG 1 cut(s) 620
TseI GCWGC 1 cut(s) 470
TspDTI ATGAA 3 cut(s) 169, 197, 302
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 1 cut(s) 620
VpaK11BI GGWCC 3 cut(s) 63, 274, 498
XmiI GTMKAC 1 cut(s) 134
XspI CTAG 3 cut(s) 294, 474, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.