Rroxscaffold_2G00081280

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000388
Physical Location & Seq
Forward (+)
4279527 .. 4289012
9486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081280.1

Sequence Viewer

Length: 1155 bp
ATGCTCTTCACCTTTTGGTTGTTAAAAAGCCTGGACTCATCAAAAAGCAAACGCCTTCTTTGCATCACTTTCGGTGCACCCCTCCTCGGGGATGAACAACTCCGACAATGTGTATCAAAAATCCCCACATTGAATTATTGCTTCTTGCATGTTGTATCTAACAAAGATCCTACACCTAAATTGTTTCAACCTCCAGGTGTGAGTGGTGTTTATAAGCCATTTGGAACATTCCTACTATGCTCTGATTCAGGTTGTGCTTGCTTTGAGGACCCAGATTTCATTTTGGGACAGTTGGTGGCATCCGACTCTCAAAGTCCTCAAAATCAAGGTCCTGATTATGGACAAATTTTGGAAGATTTCAAGCTTAGGGCACTTTGTAACAACAGTTTCAAGTTTGAAGGCGATCCACTTCAAGCTAGCATTAAAACACAACTGCTAGCAATTGGTGTTCTCCTTCCACAGCAAGAACCTAGTACGGAGATCAAAATTCTGATTGGACAGATGAAATCAAAACATGAAAGGAAAGTACTAACTCAAAAGAAGAAGGTTTCAGATTCAGACAAGAAATTGAATGACATGAAAAAGAATATGGCCAAACTGGAGTGGTACAAGAAAGATTCCAAACAGAAGCACATTGGATACTATGACATGTACAAAAAGCAGGGGAATCCATGTGATATTAATGTTAATGAGTATAAGAAGAAGATGCTGAATTACTGGGAGGACTCTGTCATAGAAGTAGAAGATGCGCCCCAGATAGAAGGAGCTCATTTTCGAGTTCGTTGGCTCTACGGAGGCACAAACTACAGAAGGATGATCGAGCCACTTCACATTGCAGAATACTACAGGGATGGTAAGAAAAATTATATAAATGGTGGTGAAAGGCCTAAACAGTTCATTCTGTTGGAGCAATGGCTCAAGCAGAAGCAAGAGGAAGAGAAGAAGAAAAAGCAAGAACAAGAGCAGGAGCCGAAGCAAGAGAAAGAGAAGCCTAAAGCTAGCCCAAGCAATAAGAAAAGAGAGATGGTGTCTGCTAGCTTAACTGAGGATTCTTGTTTTTGGGCACATGTTGAGGAGGCCATTATCTTATGCAATCTGTTGAAGAATGGAGGATCAACTACTGATGCAGAGAAAGTAGAATACGAGGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

384

Amino Acids

44.25

Weight (kDa)

8.47

Isoelectric Point (pI)

54.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDS1_EP PF18117 198 - 375 6.3e-46 Enhanced disease susceptibility 1 protein EP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AclWI GGATC 3 cut(s) 161, 398, 1120
AcoI YGGCCR 1 cut(s) 591
AcsI RAATTY 2 cut(s) 345, 486
AfaI GTAC 4 cut(s) 475, 528, 608, 653
AfiI CCNNNNNNNGG 4 cut(s) 86, 87, 88, 338
AflIII ACRYGT 2 cut(s) 648, 1066
AgsI TTSAA 8 cut(s) 133, 188, 361, 391, 398, 413, 571, 1102
AjnI CCWGG 2 cut(s) 30, 193
AluBI AGCT 5 cut(s) 364, 416, 767, 998, 1038
AluI AGCT 5 cut(s) 364, 416, 767, 998, 1038
Alw21I GWGCWC 2 cut(s) 79, 769
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 3 cut(s) 161, 398, 1120
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 3 cut(s) 591, 884, 1077
ApaLI GTGCAC 1 cut(s) 75
ApoI RAATTY 2 cut(s) 345, 486
ArsI GACNNNNNNTTYG 2 cut(s) 313, 345
AseI ATTAAT 1 cut(s) 681
AspLEI GCGC 1 cut(s) 751
AspS9I GGNCC 2 cut(s) 268, 329
AsuHPI GGTGA 1 cut(s) 890
AsuNHI GCTAGC 4 cut(s) 416, 436, 998, 1034
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 2 cut(s) 268, 329
BaeGI GKGCMC 3 cut(s) 79, 373, 1066
BalI TGGCCA 1 cut(s) 593
BanII GRGCYC 1 cut(s) 769
Bbv12I GWGCWC 2 cut(s) 79, 769
BccI CCATC 2 cut(s) 845, 1018
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciT130I CCWGG 2 cut(s) 32, 195
BciVI GTATCC 1 cut(s) 632
BfaI CTAG 5 cut(s) 417, 437, 471, 999, 1035
BfmI CTRYAG 2 cut(s) 805, 844
BfuI GTATCC 1 cut(s) 632
BmcAI AGTACT 1 cut(s) 528
Bme1390I CCNGG 2 cut(s) 32, 195
Bme18I GGWCC 2 cut(s) 268, 329
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 2 cut(s) 268, 329
BmiI GGNNCC 2 cut(s) 270, 969
BmrFI CCNGG 2 cut(s) 32, 195
BmrI ACTGGG 1 cut(s) 727
BmsI GCATC 5 cut(s) 72, 308, 696, 736, 1114
BmtI GCTAGC 4 cut(s) 420, 440, 1002, 1038
BmuI ACTGGG 1 cut(s) 727
BpmI CTGGAG 2 cut(s) 177, 620
Bpu10I CCTNAGC 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 902
BsaJI CCNNGG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 87, 88, 338
Bse1I ACTGG 2 cut(s) 603, 722
Bse3DI GCAATG 2 cut(s) 831, 917
BseBI CCWGG 2 cut(s) 32, 195
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 4 cut(s) 97, 299, 819, 856
BseLI CCNNNNNNNGG 4 cut(s) 86, 87, 88, 338
BseMI GCAATG 2 cut(s) 831, 917
BseMII CTCAG 1 cut(s) 1035
BseNI ACTGG 2 cut(s) 603, 722
BseRI GAGGAG 2 cut(s) 74, 1088
BseSI GKGCMC 3 cut(s) 79, 373, 1066
BshFI GGCC 3 cut(s) 593, 886, 1079
BsiHKAI GWGCWC 2 cut(s) 79, 769
BsiHKCI CYCGRG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 4 cut(s) 86, 87, 88, 338
BsmFI GGGAC 1 cut(s) 300
BsnI GGCC 3 cut(s) 593, 886, 1079
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 4 cut(s) 79, 373, 769, 1066
Bsp1407I TGTACA 1 cut(s) 651
Bsp143I GATC 5 cut(s) 166, 403, 480, 816, 1112
BspANI GGCC 3 cut(s) 593, 886, 1079
BspCNI CTCAG 1 cut(s) 1036
BspLI GGNNCC 2 cut(s) 270, 969
BspOI GCTAGC 4 cut(s) 420, 440, 1002, 1038
BspPI GGATC 3 cut(s) 161, 398, 1120
BspQI GCTCTTC 1 cut(s) 11
BsrDI GCAATG 2 cut(s) 831, 917
BsrGI TGTACA 1 cut(s) 651
BsrI ACTGG 2 cut(s) 603, 722
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 5 cut(s) 166, 403, 480, 816, 1112
Bst2UI CCWGG 2 cut(s) 32, 195
Bst4CI ACNGT 3 cut(s) 291, 386, 894
Bst6I CTCTTC 2 cut(s) 11, 930
BstAUI TGTACA 1 cut(s) 651
BstC8I GCNNGC 5 cut(s) 259, 418, 438, 1000, 1036
BstDEI CTNAG 2 cut(s) 365, 1044
BstF5I GGATG 4 cut(s) 97, 299, 819, 856
BstHHI GCGC 1 cut(s) 751
BstKTI GATC 5 cut(s) 169, 406, 483, 819, 1115
BstMBI GATC 5 cut(s) 166, 403, 480, 816, 1112
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNI CCWGG 2 cut(s) 32, 195
BstNSI RCATGY 3 cut(s) 152, 652, 1070
BstSCI CCNGG 2 cut(s) 30, 193
BstSFI CTRYAG 2 cut(s) 805, 844
BstSLI GKGCMC 3 cut(s) 79, 373, 1066
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuI GTATCC 1 cut(s) 632
BsuRI GGCC 3 cut(s) 593, 886, 1079
BtsCI GGATG 4 cut(s) 97, 299, 819, 856
Cac8I GCNNGC 5 cut(s) 259, 418, 438, 1000, 1036
CfoI GCGC 1 cut(s) 751
Cfr13I GGNCC 2 cut(s) 268, 329
Csp6I GTAC 4 cut(s) 474, 527, 607, 652
CviAII CATG 6 cut(s) 149, 515, 577, 649, 672, 1067
CviQI GTAC 4 cut(s) 474, 527, 607, 652
DdeI CTNAG 2 cut(s) 365, 1044
DpnI GATC 5 cut(s) 168, 405, 482, 818, 1114
DpnII GATC 5 cut(s) 166, 403, 480, 816, 1112
EaeI YGGCCR 1 cut(s) 591
Eam1104I CTCTTC 2 cut(s) 11, 930
EarI CTCTTC 2 cut(s) 11, 930
Ecl136II GAGCTC 1 cut(s) 767
Eco147I AGGCCT 1 cut(s) 886
Eco24I GRGCYC 1 cut(s) 769
Eco47I GGWCC 2 cut(s) 268, 329
Eco53kI GAGCTC 1 cut(s) 767
Eco88I CYCGRG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 767
EcoO109I RGGNCCY 2 cut(s) 268, 329
EcoRII CCWGG 2 cut(s) 30, 193
EcoT38I GRGCYC 1 cut(s) 769
FaeI CATG 6 cut(s) 152, 518, 580, 652, 675, 1070
FaqI GGGAC 1 cut(s) 300
FatI CATG 6 cut(s) 148, 514, 576, 648, 671, 1066
FokI GGATG 4 cut(s) 104, 286, 826, 863
FriOI GRGCYC 1 cut(s) 769
FspBI CTAG 5 cut(s) 417, 437, 471, 999, 1035
GlaI GCGC 1 cut(s) 750
GsuI CTGGAG 2 cut(s) 177, 620
HaeIII GGCC 3 cut(s) 593, 886, 1079
HhaI GCGC 1 cut(s) 751
Hin1II CATG 6 cut(s) 152, 518, 580, 652, 675, 1070
Hin6I GCGC 1 cut(s) 749
HinP1I GCGC 1 cut(s) 749
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 8 cut(s) 35, 245, 305, 554, 617, 667, 725, 1049
HphI GGTGA 1 cut(s) 890
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 6 cut(s) 104, 244, 304, 492, 553, 559
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 1 cut(s) 77
HpyAV CCTTC 6 cut(s) 65, 392, 464, 538, 755, 804
HpyCH4III ACNGT 3 cut(s) 291, 386, 894
HpyCH4V TGCA 6 cut(s) 63, 77, 148, 836, 1092, 1127
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 2 cut(s) 365, 1044
Hsp92II CATG 6 cut(s) 152, 518, 580, 652, 675, 1070
HspAI GCGC 1 cut(s) 749
Kzo9I GATC 5 cut(s) 166, 403, 480, 816, 1112
LguI GCTCTTC 1 cut(s) 11
LmnI GCTCC 3 cut(s) 764, 907, 967
LweI GCATC 5 cut(s) 72, 308, 696, 736, 1114
MaeI CTAG 5 cut(s) 417, 437, 471, 999, 1035
MaeIII GTNAC 1 cut(s) 377
MalI GATC 5 cut(s) 168, 405, 482, 818, 1114
MboI GATC 5 cut(s) 166, 403, 480, 816, 1112
MboII GAAGA 9 cut(s) 365, 553, 712, 715, 755, 947, 952, 955, 1114
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 4 cut(s) 79, 373, 769, 1066
MlsI TGGCCA 1 cut(s) 593
MluCI AATT 8 cut(s) 133, 179, 345, 441, 486, 566, 712, 862
MluNI TGGCCA 1 cut(s) 593
MlyI GAGTC 3 cut(s) 29, 299, 719
MmeI TCCRAC 3 cut(s) 127, 327, 885
Mox20I TGGCCA 1 cut(s) 593
MscI TGGCCA 1 cut(s) 593
MseI TTAA 5 cut(s) 23, 423, 681, 687, 1040
Msp20I TGGCCA 1 cut(s) 593
MspR9I CCNGG 2 cut(s) 32, 195
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 2 cut(s) 32, 195
MwoI GCNNNNNNNGC 1 cut(s) 60
NdeII GATC 5 cut(s) 166, 403, 480, 816, 1112
NheI GCTAGC 4 cut(s) 416, 436, 998, 1034
NlaIII CATG 6 cut(s) 152, 518, 580, 652, 675, 1070
NlaIV GGNNCC 2 cut(s) 270, 969
NspI RCATGY 3 cut(s) 152, 652, 1070
PceI AGGCCT 1 cut(s) 886
PciI ACATGT 2 cut(s) 648, 1066
PciSI GCTCTTC 1 cut(s) 11
PfeI GAWTC 5 cut(s) 245, 554, 617, 667, 1049
PflFI GACNNNGTC 1 cut(s) 728
PleI GAGTC 3 cut(s) 29, 299, 719
PpsI GAGTC 3 cut(s) 29, 299, 719
PpuMI RGGWCCY 2 cut(s) 268, 329
PscI ACATGT 2 cut(s) 648, 1066
PshBI ATTAAT 1 cut(s) 681
PsiI TTATAA 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 769
Psp5II RGGWCCY 2 cut(s) 268, 329
Psp6I CCWGG 2 cut(s) 30, 193
PspGI CCWGG 2 cut(s) 30, 193
PspN4I GGNNCC 2 cut(s) 270, 969
PspPI GGNCC 2 cut(s) 268, 329
PspPPI RGGWCCY 2 cut(s) 268, 329
PsuI RGATCY 1 cut(s) 166
PsyI GACNNNGTC 1 cut(s) 728
RsaI GTAC 4 cut(s) 475, 528, 608, 653
RsaNI GTAC 4 cut(s) 474, 527, 607, 652
SacI GAGCTC 1 cut(s) 769
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 5 cut(s) 23, 423, 681, 687, 1040
Sau3AI GATC 5 cut(s) 166, 403, 480, 816, 1112
Sau96I GGNCC 2 cut(s) 268, 329
ScaI AGTACT 1 cut(s) 528
SchI GAGTC 3 cut(s) 29, 299, 719
ScrFI CCNGG 2 cut(s) 32, 195
SduI GDGCHC 4 cut(s) 79, 373, 769, 1066
SfaNI GCATC 5 cut(s) 72, 308, 696, 736, 1114
SfcI CTRYAG 2 cut(s) 805, 844
SinI GGWCC 2 cut(s) 268, 329
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
Sse9I AATT 8 cut(s) 133, 179, 345, 441, 486, 566, 712, 862
SseBI AGGCCT 1 cut(s) 886
SspMI CTAG 5 cut(s) 417, 437, 471, 999, 1035
SstI GAGCTC 1 cut(s) 769
StuI AGGCCT 1 cut(s) 886
StyD4I CCNGG 2 cut(s) 30, 193
TaaI ACNGT 3 cut(s) 291, 386, 894
TaqI TCGA 2 cut(s) 775, 819
TasI AATT 8 cut(s) 133, 179, 345, 441, 486, 566, 712, 862
TatI WGTACW 2 cut(s) 526, 651
TfiI GAWTC 5 cut(s) 245, 554, 617, 667, 1049
Tru1I TTAA 5 cut(s) 23, 423, 681, 687, 1040
Tru9I TTAA 5 cut(s) 23, 423, 681, 687, 1040
TspDTI ATGAA 6 cut(s) 108, 268, 518, 531, 593, 886
TspGWI ACGGA 2 cut(s) 491, 807
Tth111I GACNNNGTC 1 cut(s) 728
VneI GTGCAC 1 cut(s) 75
VpaK11BI GGWCC 2 cut(s) 268, 329
VspI ATTAAT 1 cut(s) 681
XapI RAATTY 2 cut(s) 345, 486
XceI RCATGY 3 cut(s) 152, 652, 1070
XspI CTAG 5 cut(s) 417, 437, 471, 999, 1035
ZrmI AGTACT 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.