MD17G1039900.v1.1

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000388
Physical Location & Seq
Forward (+)
2925756 .. 2926246
491 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1039900.v1.1.491

Sequence Viewer

Length: 384 bp
ATGGAGTTGAATCTGGTAGAAAGCAGCAATTCCAACTCATCGATACTTATAACTGGACAGTCTTTTGGAGGCTGTGTAGCTACCCTTTTCACCTTATGGCTGCTACAAAGCCTCAACTTGTCGAAAGCAAAGCGTCCCCTTTCCATCACTTACGGTTCACCCTTGACCGGTGACAAACAACTCCGACAATGTGTGTTGCAATTCTCAACATGGAGTTCTTGCTTCTTGAATGTAGCCTCTATCAACGATCCTGTACCTAAAGCCTTCCTAACCGCTTCGCAAGCGAGTGATTACAAGCCCTTCGGAACATTCCTATTGTGCTCCGCTTCGGGTGGTTCTTGCCTTGAGGACCCTGATGCCATTTTGCTGGAATATTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

128

Amino Acids

13.68

Weight (kDa)

4.81

Isoelectric Point (pI)

55.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 5 - 89 1.3e-13 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AciI CCGC 2 cut(s) 273, 324
AclWI GGATC 1 cut(s) 242
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 1 cut(s) 167
AgeI ACCGGT 1 cut(s) 167
AgsI TTSAA 2 cut(s) 10, 229
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw21I GWGCWC 1 cut(s) 323
AlwI GGATC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 24, 100
AsiGI ACCGGT 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 349
AsuHPI GGTGA 3 cut(s) 82, 150, 182
AvaII GGWCC 1 cut(s) 349
Bbv12I GWGCWC 1 cut(s) 323
BbvI GCAGC 2 cut(s) 36, 87
BccI CCATC 1 cut(s) 152
BisI GCNGC 2 cut(s) 25, 101
BlsI GCNGC 2 cut(s) 26, 102
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 349
BmiI GGNNCC 1 cut(s) 351
BmsI GCATC 1 cut(s) 346
BpuEI CTTGAG 1 cut(s) 365
Bsa29I ATCGAT 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 58
BseCI ATCGAT 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 167
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 36, 87
BshTI ACCGGT 1 cut(s) 167
BshVI ATCGAT 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 323
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 323
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 2 cut(s) 273, 324
BspDI ATCGAT 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 351
BspPI GGATC 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 167
BssMI GATC 1 cut(s) 247
Bst4CI ACNGT 2 cut(s) 60, 155
BstC8I GCNNGC 1 cut(s) 282
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstV1I GCAGC 2 cut(s) 36, 87
BstXI CCANNNNNNTGG 1 cut(s) 367
Bsu15I ATCGAT 1 cut(s) 41
BsuTUI ATCGAT 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 282
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 349
ClaI ATCGAT 1 cut(s) 41
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 254
CspAI ACCGGT 1 cut(s) 167
CviAII CATG 1 cut(s) 210
CviJI RGCY 7 cut(s) 72, 80, 100, 111, 236, 263, 298
CviKI_1 RGCY 7 cut(s) 72, 80, 100, 111, 236, 263, 298
CviQI GTAC 1 cut(s) 254
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 349
FaeI CATG 1 cut(s) 213
FaiI YATR 3 cut(s) 50, 97, 211
FaqI GGGAC 1 cut(s) 120
FatI CATG 1 cut(s) 209
Fnu4HI GCNGC 2 cut(s) 25, 101
Fsp4HI GCNGC 2 cut(s) 25, 101
GluI GCNGC 2 cut(s) 25, 101
HapII CCGG 1 cut(s) 168
HgaI GACGC 1 cut(s) 122
Hin1II CATG 1 cut(s) 213
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 168
HphI GGTGA 3 cut(s) 82, 150, 182
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 2 cut(s) 185, 305
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 274, 310
HpyCH4III ACNGT 2 cut(s) 60, 155
HpyCH4V TGCA 1 cut(s) 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
Hsp92II CATG 1 cut(s) 213
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 5 cut(s) 39, 181, 264, 353, 366
Lsp1109I GCAGC 2 cut(s) 36, 87
LweI GCATC 1 cut(s) 346
MaeIII GTNAC 1 cut(s) 170
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 2 cut(s) 28, 200
MmeI TCCRAC 2 cut(s) 57, 208
MnlI CCTC 4 cut(s) 62, 122, 247, 340
MspI CCGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 1 cut(s) 247
NlaIII CATG 1 cut(s) 213
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 10
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 2 cut(s) 26, 102
PpuMI RGGWCCY 1 cut(s) 349
PsiI TTATAA 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 351
PspPI GGNCC 1 cut(s) 349
PspPPI RGGWCCY 1 cut(s) 349
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
SatI GCNGC 2 cut(s) 25, 101
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 349
SduI GDGCHC 1 cut(s) 323
SetI ASST 3 cut(s) 82, 95, 259
SfaNI GCATC 1 cut(s) 346
SinI GGWCC 1 cut(s) 349
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 2 cut(s) 28, 200
SsiI CCGC 2 cut(s) 273, 324
SspI AATATT 1 cut(s) 374
TaaI ACNGT 2 cut(s) 60, 155
TaqI TCGA 2 cut(s) 41, 122
TasI AATT 2 cut(s) 28, 200
TfiI GAWTC 1 cut(s) 10
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 2 cut(s) 24, 100
Tsp45I GTSAC 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.