Rh2AG620300

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000388
Physical Location & Seq
Reverse (-)
84400271 .. 84401056
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG620300.1

Sequence Viewer

Length: 786 bp
ATGAAGAAACATGAAACGAAGTTACTAATTCAAAAGAAGAAGAATTCGGATTCGGACAAGAAGTTGAATGAAATGAAAGTTTACATGGCCTTCTTGGAATGGTACAAGAGAGACTCCAAACAATACAAAATAGGATACTATGATAGGTACAGAAACCAAGGGAACCCAAGTGACGTAAATGTTAATGAGTATAAGAAAAAGCTGATGAACTACTGGGAGGACTCTGTCACAGAAGTAGAGAACAAGCCTCAGATAGAAGGAGCTCATTTTCGGGTTCGTTGGCTTATGGCGGGCACAAACTACAGAAGGATGGTTGAGCCACTTCACATTGCAGACTACTACAGGGATGGTGGAAAGAACTATAAAACTGATGGGAAAAGGCCTAAACAGTTCATTCTGTTGGAGGAATGGTTGAAGAAAGTAGACAAACCTCAAGAAGTCCCAAGCAAATCAAAAAGAGAGAACGTGGGGTCTAGTTTGAATGAGGATTCGTGTTTTTGGGCGCATGTTGAAGAAGCTCGCATGCTATGCAAACTGCTAAAGAATGAAGCAATTACTAGCGTAGAGAAAGAAGCCGCCATAAAAGAACTGAGAAAGTTTGAGGCGGATGTGTATGATGCCATAAAGAAGTATGCATTGTCTCCTGAGATTTTCTTGGACAAGAGCAGTTTTATGCTGTGGTGGAAGGACTACAAGGGAGTTGTTGAGCAGCCCTACTCCTCATTGCTGCTGGAATTCATGAAGGATCGCAGTTACGAGGCGTACAAGGAAGGGAAGTTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

261

Amino Acids

31.25

Weight (kDa)

9.14

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDS1_EP PF18117 32 - 245 6.7e-69 Enhanced disease susceptibility 1 protein EP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 423
AciI CCGC 3 cut(s) 290, 576, 605
AclWI GGATC 1 cut(s) 753
AcsI RAATTY 2 cut(s) 43, 734
AfaI GTAC 3 cut(s) 104, 149, 764
AgsI TTSAA 5 cut(s) 32, 67, 415, 481, 512
AloI GAACNNNNNNTCC 1 cut(s) 761
AluBI AGCT 3 cut(s) 202, 263, 518
AluI AGCT 3 cut(s) 202, 263, 518
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 2 cut(s) 105, 645
AlwI GGATC 1 cut(s) 753
AoxI GGCC 2 cut(s) 87, 380
ApeKI GCWGC 2 cut(s) 709, 727
ApoI RAATTY 2 cut(s) 43, 734
AspLEI GCGC 1 cut(s) 505
BaeGI GKGCMC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 714, 721
BccI CCATC 3 cut(s) 304, 341, 365
BciVI GTATCC 1 cut(s) 128
BcoDI GTCTC 2 cut(s) 105, 645
BfaI CTAG 2 cut(s) 474, 558
BfmI CTRYAG 2 cut(s) 301, 340
BfuI GTATCC 1 cut(s) 128
BisI GCNGC 3 cut(s) 576, 710, 728
BlsI GCNGC 3 cut(s) 577, 711, 729
BmiI GGNNCC 1 cut(s) 164
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 607
BmuI ACTGGG 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 2 cut(s) 327, 722
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 3 cut(s) 315, 352, 613
BseMI GCAATG 2 cut(s) 327, 722
BseMII CTCAG 3 cut(s) 263, 581, 636
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 709
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 2 cut(s) 714, 721
BshFI GGCC 2 cut(s) 89, 382
BsiHKAI GWGCWC 1 cut(s) 265
BslFI GGGAC 1 cut(s) 425
BsmAI GTCTC 2 cut(s) 105, 645
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 2 cut(s) 89, 382
Bsp1286I GDGCHC 2 cut(s) 265, 296
Bsp143I GATC 1 cut(s) 745
BspACI CCGC 3 cut(s) 290, 576, 605
BspANI GGCC 2 cut(s) 89, 382
BspCNI CTCAG 3 cut(s) 262, 582, 637
BspHI TCATGA 1 cut(s) 738
BspLI GGNNCC 1 cut(s) 164
BspPI GGATC 1 cut(s) 753
BsrDI GCAATG 2 cut(s) 327, 722
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 745
BssT1I CCWWGG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 390
BstAPI GCANNNNNTGC 1 cut(s) 528
BstC8I GCNNGC 3 cut(s) 292, 520, 524
BstDEI CTNAG 3 cut(s) 249, 590, 645
BstF5I GGATG 3 cut(s) 315, 352, 613
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 1 cut(s) 748
BstMAI GTCTC 2 cut(s) 105, 645
BstMBI GATC 1 cut(s) 745
BstMWI GCNNNNNNNGC 1 cut(s) 528
BstNSI RCATGY 2 cut(s) 509, 526
BstSFI CTRYAG 2 cut(s) 301, 340
BstSLI GKGCMC 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 714, 721
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 2 cut(s) 89, 382
BtsCI GGATG 3 cut(s) 315, 352, 613
Cac8I GCNNGC 3 cut(s) 292, 520, 524
CciI TCATGA 1 cut(s) 738
CfoI GCGC 1 cut(s) 505
Csp6I GTAC 3 cut(s) 103, 148, 763
CviAII CATG 5 cut(s) 11, 85, 506, 523, 739
CviQI GTAC 3 cut(s) 103, 148, 763
DdeI CTNAG 3 cut(s) 249, 590, 645
DpnI GATC 1 cut(s) 747
DpnII GATC 1 cut(s) 745
EciI GGCGGA 1 cut(s) 620
Ecl136II GAGCTC 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 157
Eco147I AGGCCT 1 cut(s) 382
Eco24I GRGCYC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 263
EcoRI GAATTC 2 cut(s) 43, 734
EcoT14I CCWWGG 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 637
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 5 cut(s) 14, 88, 509, 526, 742
FaqI GGGAC 1 cut(s) 425
FatI CATG 5 cut(s) 10, 84, 505, 522, 738
FauI CCCGC 1 cut(s) 283
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 3 cut(s) 576, 710, 728
FokI GGATG 3 cut(s) 322, 359, 620
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 3 cut(s) 576, 710, 728
FspBI CTAG 2 cut(s) 474, 558
GlaI GCGC 1 cut(s) 504
GluI GCNGC 3 cut(s) 576, 710, 728
HaeIII GGCC 2 cut(s) 89, 382
HhaI GCGC 1 cut(s) 505
Hin1II CATG 5 cut(s) 14, 88, 509, 526, 742
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HinfI GANTC 4 cut(s) 50, 113, 221, 488
Hpy166II GTNNAC 2 cut(s) 82, 424
Hpy188I TCNGA 4 cut(s) 49, 55, 252, 785
Hpy188III TCNNGA 3 cut(s) 434, 644, 739
Hpy8I GTNNAC 2 cut(s) 82, 424
HpyAV CCTTC 6 cut(s) 100, 251, 300, 679, 736, 764
HpyCH4III ACNGT 1 cut(s) 390
HpyCH4IV ACGT 2 cut(s) 174, 465
HpyCH4V TGCA 3 cut(s) 332, 531, 635
HpyF10VI GCNNNNNNNGC 1 cut(s) 528
HpyF3I CTNAG 3 cut(s) 249, 590, 645
HpySE526I ACGT 2 cut(s) 174, 465
Hsp92II CATG 5 cut(s) 14, 88, 509, 526, 742
HspAI GCGC 1 cut(s) 503
Kzo9I GATC 1 cut(s) 745
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 4 cut(s) 199, 328, 657, 716
Lsp1109I GCAGC 2 cut(s) 714, 721
LweI GCATC 1 cut(s) 607
MaeI CTAG 2 cut(s) 474, 558
MaeII ACGT 2 cut(s) 174, 465
MaeIII GTNAC 4 cut(s) 21, 170, 226, 752
MalI GATC 1 cut(s) 747
MboI GATC 1 cut(s) 745
MboII GAAGA 5 cut(s) 16, 49, 52, 427, 524
MhlI GDGCHC 2 cut(s) 265, 296
MluCI AATT 4 cut(s) 27, 43, 552, 734
MlyI GAGTC 2 cut(s) 107, 215
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 8 cut(s) 211, 258, 397, 441, 478, 595, 730, 751
Mph1103I ATGCAT 1 cut(s) 637
MseI TTAA 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 528
NdeII GATC 1 cut(s) 745
NlaIII CATG 5 cut(s) 14, 88, 509, 526, 742
NlaIV GGNNCC 1 cut(s) 164
NmuCI GTSAC 2 cut(s) 170, 226
NsiI ATGCAT 1 cut(s) 637
NspI RCATGY 2 cut(s) 509, 526
PaeI GCATGC 1 cut(s) 526
PagI TCATGA 1 cut(s) 738
PceI AGGCCT 1 cut(s) 382
PfeI GAWTC 2 cut(s) 50, 488
PflFI GACNNNGTC 1 cut(s) 224
PkrI GCNGC 3 cut(s) 577, 711, 729
PleI GAGTC 2 cut(s) 107, 215
PpsI GAGTC 2 cut(s) 107, 215
Psp124BI GAGCTC 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 164
PsyI GACNNNGTC 1 cut(s) 224
RsaI GTAC 3 cut(s) 104, 149, 764
RsaNI GTAC 3 cut(s) 103, 148, 763
SacI GAGCTC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 3 cut(s) 576, 710, 728
Sau3AI GATC 1 cut(s) 745
SchI GAGTC 2 cut(s) 107, 215
SduI GDGCHC 2 cut(s) 265, 296
SetI ASST 7 cut(s) 149, 177, 204, 265, 433, 468, 520
SfaNI GCATC 1 cut(s) 607
SfcI CTRYAG 2 cut(s) 301, 340
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
SphI GCATGC 1 cut(s) 526
Sse9I AATT 4 cut(s) 27, 43, 552, 734
SseBI AGGCCT 1 cut(s) 382
SsiI CCGC 3 cut(s) 290, 576, 605
SspMI CTAG 2 cut(s) 474, 558
SstI GAGCTC 1 cut(s) 265
StuI AGGCCT 1 cut(s) 382
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 390
TaiI ACGT 2 cut(s) 177, 468
TasI AATT 4 cut(s) 27, 43, 552, 734
TauI GCSGC 1 cut(s) 578
TfiI GAWTC 2 cut(s) 50, 488
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseFI GTSAC 2 cut(s) 170, 226
TseI GCWGC 2 cut(s) 709, 727
Tsp45I GTSAC 2 cut(s) 170, 226
Tth111I GACNNNGTC 1 cut(s) 224
XapI RAATTY 2 cut(s) 43, 734
XceI RCATGY 2 cut(s) 509, 526
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 2 cut(s) 474, 558
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.