Rroxscaffold_2G00081330

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000388
Physical Location & Seq
Forward (+)
4413840 .. 4416102
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081330.1

Sequence Viewer

Length: 615 bp
ATGTTAATGAGTACAAGAAAAAAACTCATGAATTATTGGGAGGACTCTGTCACAGAAGTAGAGAATAAGCCCCAGATCGAAGGAGCTCATTTTCGGGTTCGTTGGCTTTGGGCAGGCACAAACTACAGAAGGATGGTTGAGCCTCTTCACATTGCAGACTACTACAGGGATGGTGGAAAGAACTATAAAACTGATGGGAAAAGGCCTAAACAGTTCATTCTGTTGGAGGAATGGTTGAAGAAAAAAGACAAACCTCAAGAAGTCCCAAGCAAATCGAAGAGAGAGAACGTGGGGTCTAGTTTGAATGAGGATTCGTGTTTTTGGGCGCATGTTGAAGAAGCTCGCATCCGATGCAAACTGCTAAAGAATGAAGCAATTACTAGTGAAGAGAAAAAAGCTGCCATAAAAGAATTGAGAAAGTTTGAGGCGGATGTGTACGATGCCATTAAGAAGTATGCATTGTCTCCTGAGATTTTCTTGGACAAGAGCAGTTTTATGCTGTGGTGGAAGGAGTACAAGGAAGTTGTTGAGCAGCCCTACTCCTCATTGCTGCTGGAATTCATGAAGGATCGCAGTTACGAGGCGTATAAGGAAGGAAGTTCATCTGAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

204

Amino Acids

24.3

Weight (kDa)

8.61

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDS1_EP PF18117 4 - 186 1.6e-56 Enhanced disease susceptibility 1 protein EP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 613
AciI CCGC 1 cut(s) 428
AclWI GGATC 1 cut(s) 576
AcsI RAATTY 1 cut(s) 557
AfaI GTAC 3 cut(s) 13, 437, 515
AgsI TTSAA 3 cut(s) 238, 304, 335
AhlI ACTAGT 1 cut(s) 380
AluBI AGCT 3 cut(s) 86, 341, 398
AluI AGCT 3 cut(s) 86, 341, 398
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 468
AlwI GGATC 1 cut(s) 576
AoxI GGCC 1 cut(s) 203
ApeKI GCWGC 3 cut(s) 398, 532, 550
ApoI RAATTY 1 cut(s) 557
AspLEI GCGC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 3 cut(s) 385, 537, 544
BccI CCATC 3 cut(s) 127, 164, 188
BcoDI GTCTC 1 cut(s) 468
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 2 cut(s) 297, 381
BfmI CTRYAG 2 cut(s) 124, 163
BisI GCNGC 3 cut(s) 399, 533, 551
BlsI GCNGC 3 cut(s) 400, 534, 552
BmsI GCATC 3 cut(s) 341, 354, 430
BpuEI CTTGAG 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse3DI GCAATG 2 cut(s) 150, 545
BseGI GGATG 4 cut(s) 138, 175, 345, 436
BseMI GCAATG 2 cut(s) 150, 545
BseMII CTCAG 1 cut(s) 459
BseRI GAGGAG 1 cut(s) 532
BseXI GCAGC 3 cut(s) 385, 537, 544
BshFI GGCC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 88
BslFI GGGAC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 468
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 2 cut(s) 75, 568
BspACI CCGC 1 cut(s) 428
BspANI GGCC 1 cut(s) 205
BspCNI CTCAG 1 cut(s) 460
BspHI TCATGA 2 cut(s) 27, 561
BspPI GGATC 1 cut(s) 576
BsrDI GCAATG 2 cut(s) 150, 545
BssMI GATC 2 cut(s) 75, 568
Bst4CI ACNGT 1 cut(s) 213
Bst6I CTCTTC 3 cut(s) 150, 272, 381
BstAPI GCANNNNNTGC 1 cut(s) 351
BstC8I GCNNGC 2 cut(s) 115, 343
BstDEI CTNAG 1 cut(s) 468
BstF5I GGATG 4 cut(s) 138, 175, 345, 436
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 2 cut(s) 78, 571
BstMAI GTCTC 1 cut(s) 468
BstMBI GATC 2 cut(s) 75, 568
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstNSI RCATGY 1 cut(s) 332
BstSFI CTRYAG 2 cut(s) 124, 163
BstV1I GCAGC 3 cut(s) 385, 537, 544
BsuRI GGCC 1 cut(s) 205
BtsCI GGATG 4 cut(s) 138, 175, 345, 436
Cac8I GCNNGC 2 cut(s) 115, 343
CciI TCATGA 2 cut(s) 27, 561
CfoI GCGC 1 cut(s) 328
Csp6I GTAC 3 cut(s) 12, 436, 514
CviAII CATG 3 cut(s) 28, 329, 562
CviJI RGCY 8 cut(s) 70, 86, 106, 142, 205, 341, 398, 535
CviKI_1 RGCY 8 cut(s) 70, 86, 106, 142, 205, 341, 398, 535
CviQI GTAC 3 cut(s) 12, 436, 514
DdeI CTNAG 1 cut(s) 468
DpnI GATC 2 cut(s) 77, 570
DpnII GATC 2 cut(s) 75, 568
Eam1104I CTCTTC 3 cut(s) 150, 272, 381
EarI CTCTTC 3 cut(s) 150, 272, 381
EciI GGCGGA 1 cut(s) 443
Ecl136II GAGCTC 1 cut(s) 86
Eco147I AGGCCT 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 88
Eco53kI GAGCTC 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 557
EcoT22I ATGCAT 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 88
FaeI CATG 3 cut(s) 31, 332, 565
FaiI YATR 9 cut(s) 29, 186, 330, 404, 456, 497, 563, 588, 613
FaqI GGGAC 1 cut(s) 248
FatI CATG 3 cut(s) 27, 328, 561
Fnu4HI GCNGC 3 cut(s) 399, 533, 551
FokI GGATG 4 cut(s) 145, 182, 332, 443
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 3 cut(s) 399, 533, 551
FspBI CTAG 2 cut(s) 297, 381
GlaI GCGC 1 cut(s) 327
GluI GCNGC 3 cut(s) 399, 533, 551
HaeIII GGCC 1 cut(s) 205
HhaI GCGC 1 cut(s) 328
Hin1II CATG 3 cut(s) 31, 332, 565
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HinfI GANTC 2 cut(s) 44, 311
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 2 cut(s) 350, 607
Hpy188III TCNNGA 4 cut(s) 28, 257, 467, 562
Hpy8I GTNNAC 1 cut(s) 436
HpyAV CCTTC 5 cut(s) 74, 123, 502, 559, 587
HpyCH4III ACNGT 1 cut(s) 213
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 3 cut(s) 155, 354, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 3 cut(s) 31, 332, 565
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 2 cut(s) 75, 568
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 5 cut(s) 86, 99, 151, 480, 539
Lsp1109I GCAGC 3 cut(s) 385, 537, 544
LweI GCATC 3 cut(s) 341, 354, 430
MaeI CTAG 2 cut(s) 297, 381
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 49, 575
MalI GATC 2 cut(s) 77, 570
MboI GATC 2 cut(s) 75, 568
MboII GAAGA 5 cut(s) 137, 250, 289, 347, 398
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 5 cut(s) 31, 375, 410, 557, 608
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 8 cut(s) 34, 153, 220, 264, 301, 418, 553, 574
Mph1103I ATGCAT 1 cut(s) 460
MseI TTAA 2 cut(s) 5, 447
MwoI GCNNNNNNNGC 1 cut(s) 351
NdeII GATC 2 cut(s) 75, 568
NlaIII CATG 3 cut(s) 31, 332, 565
NmuCI GTSAC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 460
NspI RCATGY 1 cut(s) 332
PagI TCATGA 2 cut(s) 27, 561
PceI AGGCCT 1 cut(s) 205
PfeI GAWTC 1 cut(s) 311
PflFI GACNNNGTC 1 cut(s) 47
PkrI GCNGC 3 cut(s) 400, 534, 552
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PsiI TTATAA 1 cut(s) 613
Psp124BI GAGCTC 1 cut(s) 88
PsyI GACNNNGTC 1 cut(s) 47
RsaI GTAC 3 cut(s) 13, 437, 515
RsaNI GTAC 3 cut(s) 12, 436, 514
SacI GAGCTC 1 cut(s) 88
SaqAI TTAA 2 cut(s) 5, 447
SatI GCNGC 3 cut(s) 399, 533, 551
Sau3AI GATC 2 cut(s) 75, 568
SchI GAGTC 1 cut(s) 38
SduI GDGCHC 1 cut(s) 88
SetI ASST 5 cut(s) 88, 256, 291, 343, 400
SfaNI GCATC 3 cut(s) 341, 354, 430
SfcI CTRYAG 2 cut(s) 124, 163
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
SpeI ACTAGT 1 cut(s) 380
Sse9I AATT 5 cut(s) 31, 375, 410, 557, 608
SseBI AGGCCT 1 cut(s) 205
SsiI CCGC 1 cut(s) 428
SspMI CTAG 2 cut(s) 297, 381
SstI GAGCTC 1 cut(s) 88
StuI AGGCCT 1 cut(s) 205
TaaI ACNGT 1 cut(s) 213
TaiI ACGT 1 cut(s) 291
TaqI TCGA 2 cut(s) 78, 275
TasI AATT 5 cut(s) 31, 375, 410, 557, 608
TatI WGTACW 2 cut(s) 11, 513
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 2 cut(s) 5, 447
Tru9I TTAA 2 cut(s) 5, 447
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 3 cut(s) 398, 532, 550
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 6 cut(s) 44, 205, 384, 550, 578, 591
Tth111I GACNNNGTC 1 cut(s) 47
XapI RAATTY 1 cut(s) 557
XceI RCATGY 1 cut(s) 332
XspI CTAG 2 cut(s) 297, 381
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.