Rorug06G0158800

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000388
Physical Location & Seq
Forward (+)
22679544 .. 22679879
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0158800.1

Sequence Viewer

Length: 336 bp
ATGGGCATTCGTGTGACAGACATGGTCATTCATGCTAGGCAAATTATCCGGAGACATAAAAGCAGGTCTCATTCCATCTCATCTTATTCAGAACCAACATCAACGGCAGCATTGGATGTTCCGAAAGGCTATTTTGCGGTTTATGTCGGAGAGGAAGACAAGAAGCAGAAGCGGTTTGTGATTCCGATATCCTACTTGAACCACCCTTTGTTCCAAGACTTGTTGAATCAGGCTGCAGAAGAATTCGGTTTTGATCCTCCAACGGGTAACGGCGGACTTAGAATACCTTGCAGTGAAAGCCACTTTCTTGATCTCACTTTCTGTTTAAATAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

111

Amino Acids

12.58

Weight (kDa)

7.85

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 14 - 106 2.3e-25 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 54
AccIII TCCGGA 1 cut(s) 48
AciI CCGC 3 cut(s) 137, 172, 273
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 199, 226
Alw26I GTCTC 2 cut(s) 46, 72
AlwI GGATC 1 cut(s) 248
Aor13HI TCCGGA 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 107, 233
ApoI RAATTY 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 119, 220
BccI CCATC 1 cut(s) 83
BceAI ACGGC 2 cut(s) 120, 286
BcoDI GTCTC 2 cut(s) 46, 72
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 54
BisI GCNGC 2 cut(s) 108, 234
BlsI GCNGC 2 cut(s) 109, 235
BpiI GAAGAC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 263
BseAI TCCGGA 1 cut(s) 48
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 263
BseXI GCAGC 2 cut(s) 119, 220
BsiSI CCGG 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 2 cut(s) 46, 72
BsmI GAATGC 1 cut(s) 6
Bso31I GGTCTC 1 cut(s) 72
Bsp13I TCCGGA 1 cut(s) 48
Bsp143I GATC 2 cut(s) 253, 310
BspACI CCGC 3 cut(s) 137, 172, 273
BspEI TCCGGA 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 238
BspMI ACCTGC 1 cut(s) 54
BspPI GGATC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 72
BssMI GATC 2 cut(s) 253, 310
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 2 cut(s) 256, 313
BstMAI GTCTC 2 cut(s) 46, 72
BstMBI GATC 2 cut(s) 253, 310
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 119, 220
BstV2I GAAGAC 1 cut(s) 162
BtsCI GGATG 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 1 cut(s) 298
BveI ACCTGC 1 cut(s) 54
CviAII CATG 2 cut(s) 22, 32
CviJI RGCY 3 cut(s) 129, 233, 300
CviKI_1 RGCY 3 cut(s) 129, 233, 300
DdeI CTNAG 1 cut(s) 278
DpnI GATC 2 cut(s) 255, 312
DpnII GATC 2 cut(s) 253, 310
DraI TTTAAA 1 cut(s) 327
EciI GGCGGA 1 cut(s) 288
Eco31I GGTCTC 1 cut(s) 72
Eco32I GATATC 1 cut(s) 189
EcoRI GAATTC 1 cut(s) 242
EcoRV GATATC 1 cut(s) 189
FaeI CATG 2 cut(s) 25, 35
FaiI YATR 4 cut(s) 23, 33, 57, 144
FatI CATG 2 cut(s) 21, 31
Fnu4HI GCNGC 2 cut(s) 108, 234
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 2 cut(s) 108, 234
FspBI CTAG 1 cut(s) 36
GluI GCNGC 2 cut(s) 108, 234
HapII CCGG 1 cut(s) 49
Hin1II CATG 2 cut(s) 25, 35
HinfI GANTC 2 cut(s) 181, 226
HpaII CCGG 1 cut(s) 49
Hpy188I TCNGA 4 cut(s) 91, 123, 149, 186
Hpy188III TCNNGA 2 cut(s) 49, 308
HpyCH4V TGCA 2 cut(s) 236, 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 2 cut(s) 25, 35
Kpn2I TCCGGA 1 cut(s) 48
Kzo9I GATC 2 cut(s) 253, 310
LpnPI CCDG 3 cut(s) 49, 62, 215
Lsp1109I GCAGC 2 cut(s) 119, 220
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 13, 266
MalI GATC 2 cut(s) 255, 312
MboI GATC 2 cut(s) 253, 310
MboII GAAGA 2 cut(s) 167, 251
MluCI AATT 2 cut(s) 42, 242
MmeI TCCRAC 2 cut(s) 127, 284
MnlI CCTC 2 cut(s) 145, 267
MroI TCCGGA 1 cut(s) 48
MseI TTAA 1 cut(s) 326
MslI CAYNNNNRTG 1 cut(s) 11
MspI CCGG 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 297
NdeII GATC 2 cut(s) 253, 310
NlaIII CATG 2 cut(s) 25, 35
NmuCI GTSAC 1 cut(s) 13
PctI GAATGC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 181, 226
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 109, 235
PstI CTGCAG 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 2 cut(s) 108, 234
Sau3AI GATC 2 cut(s) 253, 310
SetI ASST 2 cut(s) 68, 289
SfcI CTRYAG 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 2 cut(s) 42, 242
SsiI CCGC 3 cut(s) 137, 172, 273
SspMI CTAG 1 cut(s) 36
TasI AATT 2 cut(s) 42, 242
TfiI GAWTC 2 cut(s) 181, 226
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 2 cut(s) 107, 233
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 298
Tth111I GACNNNGTC 1 cut(s) 23
XapI RAATTY 1 cut(s) 242
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.