RchiOBHm_Chr6g0283951

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000388
Physical Location & Seq
Reverse (-)
47219505 .. 47220263
759 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25463

Sequence Viewer

Length: 759 bp
ATGAAAAAACATGAAACAGAGTTATTAATTCAGAAGAAGAAGAATTCTGGTTCAGACAAGAAACTGAATAAAATGAAAACGTGTTTGGCCTTATTCGAGTGGTACAAGAAGGAGTCAAACTTTTTGAACACCGGATACTATGACATGTACAAAAAGCAGTGCAATCCGAGTGATATTAATGTTAGTGAGTACAAGAAAAGGCTTTGGAATTTCTGGGAGGACACAGTTACAGAAGTAGAGAATAAGCCTCAGATGGAAGGATCTCCCCTTGGAGTACGTTGGCTTTGGGCGGGTACAAACTACCGAAGGATGATTGAACCACTTCACATTGCGGAGTTCTACAAGAAAAGTGGCGCGAGAAATTACAAAAATGGTGGGAAAAGGCCTAAACATTTCATTCTATTGGAACAATGGCTGGAGAAGGAAATAAAAGGGAAAGCCAAAAGACAGATGTCTGCTACTTCAAATGAAGATTCTTGTTTCTGGGCACACGTTGAGGACGCCATTATCTTGTGCAACCTTTTGAACAATGGAGAATCGGTCACTGATGTAGAGAAAGTAACATACAAGGAGGAGTTGAAAAAGTTCGAGGATTACGTGTGGGATGTTATCGACAACTATGCAGTGTGTCCTGATATTTTCTTGGAGAAGGGCAGTTTTATGAGATGGTGGAAGCAGTACAAGGGAATTGTTGGAAGTTCTTACTCCTCACAGCTCGCTGACTATATGAATAGTCGCTCTTACCTCAAGTATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

252

Amino Acids

29.93

Weight (kDa)

9.0

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDS1_EP PF18117 32 - 240 1e-63 Enhanced disease susceptibility 1 protein EP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 752
AccII CGCG 1 cut(s) 356
AciI CCGC 2 cut(s) 290, 332
AclWI GGATC 1 cut(s) 268
AcsI RAATTY 2 cut(s) 43, 208
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 6 cut(s) 104, 149, 191, 276, 295, 680
AflIII ACRYGT 4 cut(s) 80, 144, 490, 597
AgsI TTSAA 5 cut(s) 127, 317, 465, 526, 580
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 1 cut(s) 715
AluI AGCT 1 cut(s) 715
AlwI GGATC 1 cut(s) 268
AoxI GGCC 2 cut(s) 87, 383
ApoI RAATTY 2 cut(s) 43, 208
AseI ATTAAT 2 cut(s) 26, 177
Asp700I GAANNNNTTC 2 cut(s) 321, 584
AspLEI GCGC 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 490
BccI CCATC 2 cut(s) 247, 660
BcgI CGANNNNNNTGC 2 cut(s) 602, 636
BciVI GTATCC 1 cut(s) 128
BfuI GTATCC 1 cut(s) 128
BoxI GACNNNNGTC 1 cut(s) 451
BpmI CTGGAG 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 731
BsaAI YACGTR 1 cut(s) 598
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 268
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bse3DI GCAATG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 2 cut(s) 315, 610
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 263
BseRI GAGGAG 2 cut(s) 587, 697
BseSI GKGCMC 1 cut(s) 490
Bsh1236I CGCG 1 cut(s) 356
BshFI GGCC 2 cut(s) 89, 385
BsiSI CCGG 1 cut(s) 132
BsnI GGCC 2 cut(s) 89, 385
Bsp1286I GDGCHC 1 cut(s) 490
Bsp1407I TGTACA 1 cut(s) 147
Bsp143I GATC 1 cut(s) 260
BspACI CCGC 2 cut(s) 290, 332
BspANI GGCC 2 cut(s) 89, 385
BspCNI CTCAG 1 cut(s) 262
BspFNI CGCG 1 cut(s) 356
BspPI GGATC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 327
BsrGI TGTACA 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 1 cut(s) 260
BssNAI GTATAC 1 cut(s) 753
BssNI GRCGYC 1 cut(s) 501
BssT1I CCWWGG 1 cut(s) 268
Bst1107I GTATAC 1 cut(s) 753
Bst4CI ACNGT 1 cut(s) 226
BstACI GRCGYC 1 cut(s) 501
BstAUI TGTACA 1 cut(s) 147
BstBAI YACGTR 1 cut(s) 598
BstC8I GCNNGC 1 cut(s) 717
BstDEI CTNAG 1 cut(s) 249
BstF5I GGATG 2 cut(s) 315, 610
BstFNI CGCG 1 cut(s) 356
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 1 cut(s) 263
BstMBI GATC 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 148
BstPAI GACNNNNGTC 1 cut(s) 451
BstSLI GKGCMC 1 cut(s) 490
BstUI CGCG 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BstZ17I GTATAC 1 cut(s) 753
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 2 cut(s) 89, 385
BtsCI GGATG 2 cut(s) 315, 610
BtsI GCAGTG 2 cut(s) 164, 630
BtsIMutI CAGTG 3 cut(s) 164, 543, 630
Cac8I GCNNGC 1 cut(s) 717
CfoI GCGC 1 cut(s) 356
CseI GACGC 1 cut(s) 509
Csp6I GTAC 6 cut(s) 103, 148, 190, 275, 294, 679
CspCI CAANNNNNGTGG 4 cut(s) 331, 355, 366, 390
CviAII CATG 3 cut(s) 11, 145, 756
CviJI RGCY 8 cut(s) 89, 202, 247, 283, 385, 415, 440, 715
CviKI_1 RGCY 8 cut(s) 89, 202, 247, 283, 385, 415, 440, 715
CviQI GTAC 6 cut(s) 103, 148, 190, 275, 294, 679
DdeI CTNAG 1 cut(s) 249
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 268
Eco147I AGGCCT 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 3 cut(s) 14, 148, 759
FatI CATG 3 cut(s) 10, 144, 755
FauI CCCGC 1 cut(s) 283
FblI GTMKAC 1 cut(s) 752
FokI GGATG 2 cut(s) 322, 617
GlaI GCGC 1 cut(s) 355
GsuI CTGGAG 1 cut(s) 437
HaeIII GGCC 2 cut(s) 89, 385
HapII CCGG 1 cut(s) 132
HgaI GACGC 1 cut(s) 509
HhaI GCGC 1 cut(s) 356
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 3 cut(s) 14, 148, 759
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HinfI GANTC 3 cut(s) 113, 473, 536
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 1 cut(s) 753
Hpy188I TCNGA 4 cut(s) 33, 55, 168, 252
Hpy188III TCNNGA 1 cut(s) 632
Hpy8I GTNNAC 1 cut(s) 753
HpyAV CCTTC 5 cut(s) 103, 251, 300, 415, 643
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 4 cut(s) 80, 277, 492, 597
HpyCH4V TGCA 3 cut(s) 162, 516, 623
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 4 cut(s) 80, 277, 492, 597
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 3 cut(s) 14, 148, 759
HspAI GCGC 1 cut(s) 354
Kzo9I GATC 1 cut(s) 260
LpnPI CCDG 6 cut(s) 33, 145, 199, 401, 469, 645
MaeII ACGT 4 cut(s) 80, 277, 492, 597
MaeIII GTNAC 3 cut(s) 226, 541, 559
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 4 cut(s) 46, 49, 52, 482
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 5 cut(s) 27, 43, 208, 361, 687
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 673
MnlI CCTC 7 cut(s) 211, 258, 490, 565, 583, 718, 755
MroXI GAANNNNTTC 2 cut(s) 321, 584
MseI TTAA 2 cut(s) 26, 177
MspI CCGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 356
NdeII GATC 1 cut(s) 260
NlaIII CATG 3 cut(s) 14, 148, 759
NmuCI GTSAC 1 cut(s) 541
NspI RCATGY 1 cut(s) 148
PceI AGGCCT 1 cut(s) 385
PciI ACATGT 1 cut(s) 144
PcsI WCGNNNNNNNCGW 1 cut(s) 594
PdmI GAANNNNTTC 2 cut(s) 321, 584
PfeI GAWTC 2 cut(s) 473, 536
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Ppu21I YACGTR 1 cut(s) 598
PscI ACATGT 1 cut(s) 144
PshAI GACNNNNGTC 1 cut(s) 451
PshBI ATTAAT 2 cut(s) 26, 177
PsrI GAACNNNNNNTAC 2 cut(s) 119, 151
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 6 cut(s) 104, 149, 191, 276, 295, 680
RsaNI GTAC 6 cut(s) 103, 148, 190, 275, 294, 679
SaqAI TTAA 2 cut(s) 26, 177
Sau3AI GATC 1 cut(s) 260
SchI GAGTC 1 cut(s) 122
SduI GDGCHC 1 cut(s) 490
SetI ASST 7 cut(s) 83, 280, 495, 522, 600, 717, 747
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
Sse9I AATT 5 cut(s) 27, 43, 208, 361, 687
SseBI AGGCCT 1 cut(s) 385
SsiI CCGC 2 cut(s) 290, 332
StuI AGGCCT 1 cut(s) 385
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 4 cut(s) 83, 280, 495, 600
TaqI TCGA 3 cut(s) 96, 588, 612
TaqII GACCGA 1 cut(s) 529
TasI AATT 5 cut(s) 27, 43, 208, 361, 687
TatI WGTACW 3 cut(s) 147, 189, 678
TfiI GAWTC 2 cut(s) 473, 536
Tru1I TTAA 2 cut(s) 26, 177
Tru9I TTAA 2 cut(s) 26, 177
TscAI CASTG 3 cut(s) 164, 550, 630
TseFI GTSAC 1 cut(s) 541
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 6 cut(s) 17, 27, 89, 385, 483, 743
TspRI CASTG 3 cut(s) 164, 550, 630
VspI ATTAAT 2 cut(s) 26, 177
XapI RAATTY 2 cut(s) 43, 208
XceI RCATGY 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 752
XmnI GAANNNNTTC 2 cut(s) 321, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.