Rh2BG631700

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000388
Physical Location & Seq
Reverse (-)
85399604 .. 85400242
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG631700.1

Sequence Viewer

Length: 438 bp
ATGCCAGAAAGCTTTAAGATGCCCATAAAAAACCGGTTTAGCAGCGGCTTAGAATCGGGGAATCTTGTGGTGAACTCTGATCCAGTACACCAGGCATGGTGTGCTATTGAGCAACAAAGACAGATTAATCCAAATGCAGAGCCATCCTTGTACAATGAAATCCAACCAGAAAATCCAATCATCATAGCTTTTGGCACTCCACCTGGCTCTCTTCAGGGACAAGAAGGCTTGGTTTCATCAAAAGATTTTGCTCACTTTGAATTTTTGTGCAACAAAAGCAATCCAGTTTTCTGCATCAATGAAGCAGCAATCAAACTATTTCAGTCACATTATAGTGACCTCCTCGTTCTGAAAAATAAGGTTGGTTGTAGGAAGCTAACAACTAAAGTAGTTATCTTAGTTTCACTAGTATTTGTAAAAATTAAAGATTCGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

145

Amino Acids

16.12

Weight (kDa)

7.67

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 2 cut(s) 87, 152
AgeI ACCGGT 1 cut(s) 33
AgsI TTSAA 1 cut(s) 260
AhlI ACTAGT 1 cut(s) 406
AjnI CCWGG 2 cut(s) 90, 202
AluBI AGCT 3 cut(s) 12, 188, 376
AluI AGCT 3 cut(s) 12, 188, 376
AlwI GGATC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 42, 305
ApoI RAATTY 1 cut(s) 260
AseI ATTAAT 1 cut(s) 126
AsiGI ACCGGT 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 82
BbvI GCAGC 2 cut(s) 54, 317
BccI CCATC 1 cut(s) 151
BciT130I CCWGG 2 cut(s) 92, 204
BcuI ACTAGT 1 cut(s) 406
BfaI CTAG 1 cut(s) 407
BisI GCNGC 3 cut(s) 43, 46, 306
BlsI GCNGC 3 cut(s) 44, 47, 307
Bme1390I CCNGG 2 cut(s) 92, 204
BmrFI CCNGG 2 cut(s) 92, 204
BmsI GCATC 2 cut(s) 9, 303
BsaWI WCCGGW 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 33
Bse1I ACTGG 2 cut(s) 83, 284
BseBI CCWGG 2 cut(s) 92, 204
BseGI GGATG 1 cut(s) 143
BseNI ACTGG 2 cut(s) 83, 284
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 2 cut(s) 54, 317
BshTI ACCGGT 1 cut(s) 33
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 150
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 1 cut(s) 45
BspPI GGATC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 33
BsrGI TGTACA 1 cut(s) 150
BsrI ACTGG 2 cut(s) 83, 284
BssAI RCCGGY 1 cut(s) 33
BssMI GATC 1 cut(s) 79
Bst2UI CCWGG 2 cut(s) 92, 204
Bst6I CTCTTC 1 cut(s) 216
BstAPI GCANNNNNTGC 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 150
BstDEI CTNAG 2 cut(s) 49, 397
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 101, 276
BstNI CCWGG 2 cut(s) 92, 204
BstSCI CCNGG 2 cut(s) 90, 202
BstV1I GCAGC 2 cut(s) 54, 317
BtsCI GGATG 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 33
Csp6I GTAC 2 cut(s) 86, 151
CspAI ACCGGT 1 cut(s) 33
CviAII CATG 1 cut(s) 96
CviJI RGCY 7 cut(s) 12, 48, 142, 188, 207, 228, 376
CviKI_1 RGCY 7 cut(s) 12, 48, 142, 188, 207, 228, 376
CviQI GTAC 2 cut(s) 86, 151
DdeI CTNAG 2 cut(s) 49, 397
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 90, 202
FaeI CATG 1 cut(s) 99
FaiI YATR 5 cut(s) 26, 97, 185, 333, 436
FaqI GGGAC 1 cut(s) 231
FatI CATG 1 cut(s) 95
Fnu4HI GCNGC 3 cut(s) 43, 46, 306
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 43, 46, 306
FspBI CTAG 1 cut(s) 407
GluI GCNGC 3 cut(s) 43, 46, 306
HapII CCGG 1 cut(s) 34
Hin1II CATG 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 3 cut(s) 53, 61, 428
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 73, 88
Hpy188I TCNGA 2 cut(s) 79, 351
Hpy8I GTNNAC 2 cut(s) 73, 88
HpyAV CCTTC 1 cut(s) 218
HpyCH4V TGCA 3 cut(s) 137, 270, 294
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 276
HpyF3I CTNAG 2 cut(s) 49, 397
Hsp92II CATG 1 cut(s) 99
Kzo9I GATC 1 cut(s) 79
Lsp1109I GCAGC 2 cut(s) 54, 317
LweI GCATC 2 cut(s) 9, 303
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 2 cut(s) 324, 335
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 1 cut(s) 203
MluCI AATT 2 cut(s) 260, 420
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 2 cut(s) 350, 353
MseI TTAA 3 cut(s) 15, 126, 423
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 92, 204
MvaI CCWGG 2 cut(s) 92, 204
MwoI GCNNNNNNNGC 2 cut(s) 101, 276
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 99
NmuCI GTSAC 2 cut(s) 324, 335
PfeI GAWTC 3 cut(s) 53, 61, 428
PinAI ACCGGT 1 cut(s) 33
PkrI GCNGC 3 cut(s) 44, 47, 307
PshBI ATTAAT 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 90, 202
PspGI CCWGG 2 cut(s) 90, 202
RsaI GTAC 2 cut(s) 87, 152
RsaNI GTAC 2 cut(s) 86, 151
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 3 cut(s) 15, 126, 423
SatI GCNGC 3 cut(s) 43, 46, 306
Sau3AI GATC 1 cut(s) 79
ScrFI CCNGG 2 cut(s) 92, 204
SetI ASST 6 cut(s) 14, 190, 205, 342, 363, 378
SfaNI GCATC 2 cut(s) 9, 303
SmiMI CAYNNNNRTG 1 cut(s) 333
SpeI ACTAGT 1 cut(s) 406
Sse9I AATT 2 cut(s) 260, 420
SsiI CCGC 1 cut(s) 45
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 2 cut(s) 90, 202
TaqI TCGA 1 cut(s) 431
TasI AATT 2 cut(s) 260, 420
TatI WGTACW 2 cut(s) 85, 150
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 3 cut(s) 53, 61, 428
Tru1I TTAA 3 cut(s) 15, 126, 423
Tru9I TTAA 3 cut(s) 15, 126, 423
TseFI GTSAC 2 cut(s) 324, 335
TseI GCWGC 2 cut(s) 42, 305
Tsp45I GTSAC 2 cut(s) 324, 335
TspDTI ATGAA 3 cut(s) 171, 225, 315
VspI ATTAAT 1 cut(s) 126
XapI RAATTY 1 cut(s) 260
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.