Rh7BG319600

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000388
Physical Location & Seq
Reverse (-)
31134797 .. 31136047
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG319600.1

Sequence Viewer

Length: 897 bp
ATGACCATCCAAAACCAGTTTAGCAGCGGCTTAGAATCGGGGAATTTTGTGGTGAACTCTGATCTGGTACACCAGGCATGGTGTGCGATTGAGCAACAAAGACAGGTTAATCCAAATGCAGAGCCATCCTTGTACAATGAAATAATCCAACCAGAAAATCCAATCGTCATAGCTTTTGGCACTCCACCTGGCTCTCTTCAGGGACAAGAAGGCTTGGTTTCGTCAGAAGGTTTTGCTCACTTTGAATTTTTGTGCAACAAAAGCAATCCTGTTTTCTCCATCAATGAAGCAGCTATCAAACTATTCCAGTCGCATTATAATGACCTCCTCCTCCTGAAAAATAAGCTGGTAGAGAACAGCAAGAGCAAAACCCCACCATTAATAATCATCACTGGACAATTTTTGGGAGGTAGTGTGGCTACACTCTTCACCTTATGGTTGCTAGAAGGCCTCAACTTGTCGAAAACCAAACGCCCGCTTTGCATTACTTTCGGTTCTCCACTTGTTGGCGATGAACACCTTCGAAAATGTGTGCTAGAATTCTCAACTTGGAAGTCTTGCTTCTTGCATATAGTCTCCGACCAAGATCATACACCGAAAATCTTTATGTCCCAAAATACAACTGGTGCTTATAAACCGTTTGGAACATTCTTGTTGTGCTCGGCTTCGGGTTGTGCTTGCTCTGAGGACCCGGATATCATTTCGGAACAATTTGTGACAACCAATTTTCCCAGTGCTCAAACTCAAGATCCTAATTTGGGGTTTTCTTATGGACAAATTTTGGAGGATCTCAAGCGGAAGGCATTATGTAATATTTTCAAGCCCATTGAAGGGCAAAGCCATCCGCTTCAAGCTAGCATAATCACACAACTCCTAGCAATTGGAGTAGTCTCACAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

299

Amino Acids

32.87

Weight (kDa)

5.49

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 91 - 203 7e-13 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 318, 633
AccB7I CCANNNNNTGG 1 cut(s) 506
AciI CCGC 4 cut(s) 27, 476, 796, 845
AclWI GGATC 2 cut(s) 743, 795
AcsI RAATTY 4 cut(s) 43, 245, 539, 777
AcuI CTGAAG 1 cut(s) 182
AfaI GTAC 2 cut(s) 69, 134
AfiI CCNNNNNNNGG 4 cut(s) 506, 758, 830, 831
AgsI TTSAA 4 cut(s) 245, 820, 830, 851
AjnI CCWGG 2 cut(s) 72, 187
AluBI AGCT 4 cut(s) 173, 293, 346, 854
AluI AGCT 4 cut(s) 173, 293, 346, 854
Alw21I GWGCWC 2 cut(s) 662, 739
Alw26I GTCTC 1 cut(s) 580
AlwI GGATC 2 cut(s) 743, 795
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 2 cut(s) 24, 290
ApoI RAATTY 4 cut(s) 43, 245, 539, 777
AseI ATTAAT 1 cut(s) 380
Asp700I GAANNNNTTC 1 cut(s) 519
AspS9I GGNCC 1 cut(s) 688
AsuC2I CCSGG 1 cut(s) 692
AsuHPI GGTGA 2 cut(s) 64, 421
AsuII TTCGAA 1 cut(s) 523
AsuNHI GCTAGC 1 cut(s) 854
AvaII GGWCC 1 cut(s) 688
Bbv12I GWGCWC 2 cut(s) 662, 739
BbvI GCAGC 2 cut(s) 36, 302
BccI CCATC 4 cut(s) 14, 133, 287, 849
BcgI CGANNNNNNTGC 2 cut(s) 472, 506
BciT130I CCWGG 2 cut(s) 74, 189
BcnI CCSGG 1 cut(s) 692
BcoDI GTCTC 1 cut(s) 580
BfaI CTAG 4 cut(s) 443, 536, 855, 875
BisI GCNGC 3 cut(s) 25, 28, 291
BlsI GCNGC 3 cut(s) 26, 29, 292
Bme1390I CCNGG 3 cut(s) 74, 189, 692
Bme18I GGWCC 1 cut(s) 688
BmgT120I GGNCC 1 cut(s) 688
BmiI GGNNCC 1 cut(s) 690
BmrFI CCNGG 3 cut(s) 74, 189, 692
BmrI ACTGGG 1 cut(s) 726
BmtI GCTAGC 1 cut(s) 858
BmuI ACTGGG 1 cut(s) 726
Bpu14I TTCGAA 1 cut(s) 523
BpuEI CTTGAG 2 cut(s) 729, 776
BpuMI CCSGG 1 cut(s) 692
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 4 cut(s) 506, 758, 830, 831
Bse1I ACTGG 5 cut(s) 16, 307, 397, 628, 732
BseBI CCWGG 2 cut(s) 74, 189
BseGI GGATG 3 cut(s) 6, 125, 841
BseLI CCNNNNNNNGG 4 cut(s) 506, 758, 830, 831
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 5 cut(s) 16, 307, 397, 628, 732
BseRI GAGGAG 2 cut(s) 317, 320
BseXI GCAGC 2 cut(s) 36, 302
BshFI GGCC 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 662, 739
BsiSI CCGG 1 cut(s) 692
BslFI GGGAC 2 cut(s) 216, 595
BslI CCNNNNNNNGG 4 cut(s) 506, 758, 830, 831
BsmAI GTCTC 1 cut(s) 580
BsmFI GGGAC 2 cut(s) 216, 595
BsnI GGCC 1 cut(s) 450
Bsp119I TTCGAA 1 cut(s) 523
Bsp1286I GDGCHC 2 cut(s) 662, 739
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 4 cut(s) 61, 586, 748, 787
BspACI CCGC 4 cut(s) 27, 476, 796, 845
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 690
BspOI GCTAGC 1 cut(s) 858
BspPI GGATC 2 cut(s) 743, 795
BspT104I TTCGAA 1 cut(s) 523
BsrGI TGTACA 1 cut(s) 132
BsrI ACTGG 5 cut(s) 16, 307, 397, 628, 732
BssMI GATC 4 cut(s) 61, 586, 748, 787
Bst2UI CCWGG 2 cut(s) 74, 189
Bst4CI ACNGT 1 cut(s) 639
Bst6I CTCTTC 2 cut(s) 201, 431
BstAPI GCANNNNNTGC 1 cut(s) 83
BstAUI TGTACA 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 523
BstC8I GCNNGC 3 cut(s) 476, 679, 856
BstDEI CTNAG 2 cut(s) 31, 684
BstF5I GGATG 3 cut(s) 6, 125, 841
BstKTI GATC 4 cut(s) 64, 589, 751, 790
BstMAI GTCTC 1 cut(s) 580
BstMBI GATC 4 cut(s) 61, 586, 748, 787
BstMWI GCNNNNNNNGC 3 cut(s) 83, 261, 480
BstNI CCWGG 2 cut(s) 74, 189
BstSCI CCNGG 3 cut(s) 72, 187, 690
BstV1I GCAGC 2 cut(s) 36, 302
BstX2I RGATCY 2 cut(s) 748, 787
BstYI RGATCY 2 cut(s) 748, 787
BsuRI GGCC 1 cut(s) 450
BtgZI GCGATG 1 cut(s) 525
BtsCI GGATG 3 cut(s) 6, 125, 841
BtsIMutI CAGTG 2 cut(s) 390, 739
Cac8I GCNNGC 3 cut(s) 476, 679, 856
Cfr13I GGNCC 1 cut(s) 688
Csp6I GTAC 2 cut(s) 68, 133
CviAII CATG 1 cut(s) 78
CviQI GTAC 2 cut(s) 68, 133
DdeI CTNAG 2 cut(s) 31, 684
DpnI GATC 4 cut(s) 63, 588, 750, 789
DpnII GATC 4 cut(s) 61, 586, 748, 787
Eam1104I CTCTTC 2 cut(s) 201, 431
EarI CTCTTC 2 cut(s) 201, 431
Eco147I AGGCCT 1 cut(s) 450
Eco32I GATATC 1 cut(s) 697
Eco47I GGWCC 1 cut(s) 688
Eco57I CTGAAG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 688
EcoRI GAATTC 1 cut(s) 539
EcoRII CCWGG 2 cut(s) 72, 187
EcoRV GATATC 1 cut(s) 697
FaeI CATG 1 cut(s) 81
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FaqI GGGAC 2 cut(s) 216, 595
FatI CATG 1 cut(s) 77
FauI CCCGC 1 cut(s) 483
Fnu4HI GCNGC 3 cut(s) 25, 28, 291
FokI GGATG 2 cut(s) 112, 828
Fsp4HI GCNGC 3 cut(s) 25, 28, 291
FspBI CTAG 4 cut(s) 443, 536, 855, 875
GluI GCNGC 3 cut(s) 25, 28, 291
HaeIII GGCC 1 cut(s) 450
HapII CCGG 1 cut(s) 692
Hin1II CATG 1 cut(s) 81
HinfI GANTC 1 cut(s) 35
HpaII CCGG 1 cut(s) 692
HphI GGTGA 2 cut(s) 64, 421
Hpy166II GTNNAC 2 cut(s) 55, 70
Hpy188I TCNGA 5 cut(s) 61, 226, 580, 685, 706
Hpy188III TCNNGA 2 cut(s) 334, 746
Hpy8I GTNNAC 2 cut(s) 55, 70
HpyAV CCTTC 6 cut(s) 203, 221, 440, 530, 793, 824
HpyCH4III ACNGT 1 cut(s) 639
HpyCH4V TGCA 4 cut(s) 119, 255, 483, 568
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 261, 480
HpyF3I CTNAG 2 cut(s) 31, 684
Hsp92II CATG 1 cut(s) 81
Kzo9I GATC 4 cut(s) 61, 586, 748, 787
Lsp1109I GCAGC 2 cut(s) 36, 302
MaeI CTAG 4 cut(s) 443, 536, 855, 875
MaeIII GTNAC 1 cut(s) 715
MalI GATC 4 cut(s) 63, 588, 750, 789
MboI GATC 4 cut(s) 61, 586, 748, 787
MboII GAAGA 2 cut(s) 188, 418
MfeI CAATTG 1 cut(s) 879
MflI RGATCY 2 cut(s) 748, 787
MhlI GDGCHC 2 cut(s) 662, 739
MluCI AATT 9 cut(s) 43, 245, 398, 539, 710, 724, 754, 777, 879
MmeI TCCRAC 2 cut(s) 172, 603
MnlI CCTC 7 cut(s) 335, 338, 341, 401, 461, 679, 778
MroXI GAANNNNTTC 1 cut(s) 519
MseI TTAA 2 cut(s) 108, 380
MslI CAYNNNNRTG 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 1 cut(s) 692
MspR9I CCNGG 3 cut(s) 74, 189, 692
MunI CAATTG 1 cut(s) 879
MvaI CCWGG 2 cut(s) 74, 189
MwoI GCNNNNNNNGC 3 cut(s) 83, 261, 480
NciI CCSGG 1 cut(s) 692
NdeII GATC 4 cut(s) 61, 586, 748, 787
NheI GCTAGC 1 cut(s) 854
NlaIII CATG 1 cut(s) 81
NlaIV GGNNCC 1 cut(s) 690
NmeAIII GCCGAG 1 cut(s) 641
NmuCI GTSAC 1 cut(s) 715
NspV TTCGAA 1 cut(s) 523
PceI AGGCCT 1 cut(s) 450
PdmI GAANNNNTTC 1 cut(s) 519
PfeI GAWTC 1 cut(s) 35
PflMI CCANNNNNTGG 1 cut(s) 506
PkrI GCNGC 3 cut(s) 26, 29, 292
PpuMI RGGWCCY 1 cut(s) 688
PshBI ATTAAT 1 cut(s) 380
PsiI TTATAA 2 cut(s) 318, 633
Psp5II RGGWCCY 1 cut(s) 688
Psp6I CCWGG 2 cut(s) 72, 187
PspGI CCWGG 2 cut(s) 72, 187
PspN4I GGNNCC 1 cut(s) 690
PspPI GGNCC 1 cut(s) 688
PspPPI RGGWCCY 1 cut(s) 688
PsuI RGATCY 2 cut(s) 748, 787
RsaI GTAC 2 cut(s) 69, 134
RsaNI GTAC 2 cut(s) 68, 133
RseI CAYNNNNRTG 1 cut(s) 318
SaqAI TTAA 2 cut(s) 108, 380
SatI GCNGC 3 cut(s) 25, 28, 291
Sau3AI GATC 4 cut(s) 61, 586, 748, 787
Sau96I GGNCC 1 cut(s) 688
ScrFI CCNGG 3 cut(s) 74, 189, 692
SduI GDGCHC 2 cut(s) 662, 739
SfuI TTCGAA 1 cut(s) 523
SinI GGWCC 1 cut(s) 688
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 2 cut(s) 744, 791
SmoI CTYRAG 2 cut(s) 744, 791
Sse9I AATT 9 cut(s) 43, 245, 398, 539, 710, 724, 754, 777, 879
SseBI AGGCCT 1 cut(s) 450
SsiI CCGC 4 cut(s) 27, 476, 796, 845
SspI AATATT 1 cut(s) 814
SspMI CTAG 4 cut(s) 443, 536, 855, 875
StuI AGGCCT 1 cut(s) 450
StyD4I CCNGG 3 cut(s) 72, 187, 690
TaaI ACNGT 1 cut(s) 639
TaqI TCGA 2 cut(s) 461, 523
TasI AATT 9 cut(s) 43, 245, 398, 539, 710, 724, 754, 777, 879
TatI WGTACW 1 cut(s) 132
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 2 cut(s) 108, 380
Tru9I TTAA 2 cut(s) 108, 380
TscAI CASTG 2 cut(s) 397, 739
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 2 cut(s) 24, 290
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 3 cut(s) 153, 300, 528
TspRI CASTG 2 cut(s) 397, 739
Van91I CCANNNNNTGG 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 688
VspI ATTAAT 1 cut(s) 380
XapI RAATTY 4 cut(s) 43, 245, 539, 777
XcmI CCANNNNNNNNNTGG 1 cut(s) 620
XmnI GAANNNNTTC 1 cut(s) 519
XspI CTAG 4 cut(s) 443, 536, 855, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.