Rmu_sc0009395.1_g000026

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009395.1
OG0000388
Physical Location & Seq
Forward (+)
114474 .. 116051
1578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009395.1_g000026.1.cds

Sequence Viewer

Length: 945 bp
atgaccatcaaccaattcagcagcggtttggaatcggcgaactttgtgttgacctctgatacagttcaccaggcttggagtgcaatcgagaaacaaaaacagatcaatccaaatgcagagctgtctctgttcagtgaaatccaatcagaaaatcctaccatcatagcttttggaactccacccggctctcttcatggacaagaaggcttggtttcattgtcagatctcaaacaagacaactttgctcactttgagtttttgtgcaacaaaagcaacccaaatttcttcctcaatcaagcagcaaccaaactctttaagtcacaataccatgagctcctccaactgaaagagaagctggtagagaatagcaaaagcaaaaccccttcattagtaatcatcactggacaatctgttggaggtagtgtggctacactcttcactttgtggctgctacaaggcctcaacttgtcaaaagccaaacgccccctttgcctaaaggccgtcctcgtttctctcctcgtttctccttcaccggcatctatttcggtcgtcttcatctcacaacagcgtcggcgtcttcgtctgcagcgtcactctttttctccttcagatcgacgccgtcaccagctgctgtcttcaccggtcatcttcatctgcatcagatccggcttcgtcactcgacgtctcacgcccagatccggcttcgtctccgacaacccagaccgccgttgcttcccttcgtctcacccaagtcggccggattccttacttggcagcccgagtcgaccacgtctgaccttcaccggccccgtcacaacccagatcgatcaactcagccgagtcaactcagccgagtcaactcaaccgagtccactcaaccgggtcaactcaaccgagtcaactcaactcggccaatccaacccggtccacctcaacaggttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

314

Amino Acids

34.78

Weight (kDa)

10.24

Isoelectric Point (pI)

61.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 943
AatII GACGTC 1 cut(s) 685
AccI GTMKAC 1 cut(s) 784
AciI CCGC 2 cut(s) 24, 724
AclWI GGATC 2 cut(s) 657, 690
AcoI YGGCCR 2 cut(s) 755, 910
AcsI RAATTY 1 cut(s) 280
AcuI CTGAAG 1 cut(s) 591
AcyI GRCGYC 3 cut(s) 574, 616, 682
AdeI CACNNNGTG 1 cut(s) 444
AfiI CCNNNNNNNGG 1 cut(s) 698
AgeI ACCGGT 1 cut(s) 640
AjiI CACGTC 1 cut(s) 791
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 5 cut(s) 121, 167, 334, 355, 628
AluI AGCT 5 cut(s) 121, 167, 334, 355, 628
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 4 cut(s) 129, 689, 712, 747
AlwI GGATC 2 cut(s) 657, 690
AlwNI CAGNNNCTG 1 cut(s) 631
Ama87I CYCGRG 1 cut(s) 778
AoxI GGCC 5 cut(s) 457, 498, 755, 805, 910
ApeKI GCWGC 6 cut(s) 21, 299, 448, 586, 628, 774
ApoI RAATTY 1 cut(s) 280
AsiGI ACCGGT 1 cut(s) 640
AspS9I GGNCC 2 cut(s) 806, 925
AsuC2I CCSGG 3 cut(s) 183, 881, 923
AsuHPI GGTGA 6 cut(s) 59, 522, 614, 630, 737, 793
AvaI CYCGRG 1 cut(s) 778
AvaII GGWCC 1 cut(s) 925
BanII GRGCYC 1 cut(s) 336
BbsI GAAGAC 3 cut(s) 544, 569, 627
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 6 cut(s) 33, 311, 435, 598, 615, 786
BccI CCATC 2 cut(s) 14, 167
BceAI ACGGC 3 cut(s) 485, 603, 711
BcgI CGANNNNNNTGC 2 cut(s) 525, 559
BciT130I CCWGG 1 cut(s) 71
BcnI CCSGG 3 cut(s) 183, 881, 923
BcoDI GTCTC 4 cut(s) 129, 689, 712, 747
BfmI CTRYAG 1 cut(s) 584
BglII AGATCT 1 cut(s) 223
BisI GCNGC 6 cut(s) 22, 300, 449, 587, 629, 775
BlsI GCNGC 6 cut(s) 23, 301, 450, 588, 630, 776
Bme1390I CCNGG 4 cut(s) 71, 183, 881, 923
Bme18I GGWCC 1 cut(s) 925
BmeT110I CYCGRG 1 cut(s) 778
BmgBI CACGTC 1 cut(s) 791
BmgT120I GGNCC 2 cut(s) 806, 925
BmiI GGNNCC 1 cut(s) 808
BmrFI CCNGG 4 cut(s) 71, 183, 881, 923
BmsI GCATC 2 cut(s) 545, 666
BpiI GAAGAC 3 cut(s) 544, 569, 627
BpuMI CCSGG 3 cut(s) 183, 881, 923
Bsa29I ATCGAT 1 cut(s) 825
BsaHI GRCGYC 3 cut(s) 574, 616, 682
BsaWI WCCGGW 1 cut(s) 640
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse118I RCCGGY 3 cut(s) 532, 640, 803
Bse1I ACTGG 1 cut(s) 406
BseBI CCWGG 1 cut(s) 71
BseCI ATCGAT 1 cut(s) 825
BseLI CCNNNNNNNGG 1 cut(s) 698
BseMII CTCAG 2 cut(s) 847, 861
BseNI ACTGG 1 cut(s) 406
BseRI GAGGAG 2 cut(s) 326, 506
BseX3I CGGCCG 1 cut(s) 755
BseXI GCAGC 6 cut(s) 33, 311, 435, 598, 615, 786
Bsh1285I CGRYCG 2 cut(s) 549, 758
BshFI GGCC 5 cut(s) 459, 500, 757, 807, 912
BshTI ACCGGT 1 cut(s) 640
BshVI ATCGAT 1 cut(s) 825
BsiEI CGRYCG 2 cut(s) 549, 758
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 778
BsiSI CCGG 9 cut(s) 183, 533, 641, 666, 699, 758, 804, 880, 923
BslI CCNNNNNNNGG 1 cut(s) 698
BsmAI GTCTC 4 cut(s) 129, 689, 712, 747
BsmBI CGTCTC 3 cut(s) 689, 712, 747
BsnI GGCC 5 cut(s) 459, 500, 757, 807, 912
BsoBI CYCGRG 1 cut(s) 778
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 7 cut(s) 102, 223, 610, 662, 695, 822, 826
BspACI CCGC 2 cut(s) 24, 724
BspANI GGCC 5 cut(s) 459, 500, 757, 807, 912
BspCNI CTCAG 2 cut(s) 846, 860
BspDI ATCGAT 1 cut(s) 825
BspLI GGNNCC 1 cut(s) 808
BspMAI CTGCAG 1 cut(s) 588
BspPI GGATC 2 cut(s) 657, 690
BsrFI RCCGGY 3 cut(s) 532, 640, 803
BsrI ACTGG 1 cut(s) 406
BssAI RCCGGY 3 cut(s) 532, 640, 803
BssMI GATC 7 cut(s) 102, 223, 610, 662, 695, 822, 826
BssNI GRCGYC 3 cut(s) 574, 616, 682
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 2 cut(s) 195, 440
BstACI GRCGYC 3 cut(s) 574, 616, 682
BstDEI CTNAG 2 cut(s) 833, 847
BstKTI GATC 7 cut(s) 105, 226, 613, 665, 698, 825, 829
BstMAI GTCTC 4 cut(s) 129, 689, 712, 747
BstMBI GATC 7 cut(s) 102, 223, 610, 662, 695, 822, 826
BstMCI CGRYCG 2 cut(s) 549, 758
BstMWI GCNNNNNNNGC 3 cut(s) 80, 270, 489
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 4 cut(s) 69, 181, 879, 921
BstSFI CTRYAG 1 cut(s) 584
BstV1I GCAGC 6 cut(s) 33, 311, 435, 598, 615, 786
BstV2I GAAGAC 3 cut(s) 544, 569, 627
BstX2I RGATCY 3 cut(s) 223, 662, 695
BstYI RGATCY 3 cut(s) 223, 662, 695
BstZI CGGCCG 1 cut(s) 755
Bsu15I ATCGAT 1 cut(s) 825
BsuRI GGCC 5 cut(s) 459, 500, 757, 807, 912
BsuTUI ATCGAT 1 cut(s) 825
BtrI CACGTC 1 cut(s) 791
BtsIMutI CAGTG 2 cut(s) 139, 399
CaiI CAGNNNCTG 1 cut(s) 631
Cfr10I RCCGGY 3 cut(s) 532, 640, 803
Cfr13I GGNCC 2 cut(s) 806, 925
ClaI ATCGAT 1 cut(s) 825
CseI GACGC 4 cut(s) 557, 563, 578, 624
CspAI ACCGGT 1 cut(s) 640
CviAII CATG 2 cut(s) 194, 329
DdeI CTNAG 2 cut(s) 833, 847
DpnI GATC 7 cut(s) 104, 225, 612, 664, 697, 824, 828
DpnII GATC 7 cut(s) 102, 223, 610, 662, 695, 822, 826
DraIII CACNNNGTG 1 cut(s) 444
EaeI YGGCCR 2 cut(s) 755, 910
EagI CGGCCG 1 cut(s) 755
Eam1104I CTCTTC 2 cut(s) 195, 440
EarI CTCTTC 2 cut(s) 195, 440
Ecl136II GAGCTC 1 cut(s) 334
EclXI CGGCCG 1 cut(s) 755
Eco147I AGGCCT 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 925
Eco52I CGGCCG 1 cut(s) 755
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 591
Eco88I CYCGRG 1 cut(s) 778
EcoICRI GAGCTC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 336
Esp3I CGTCTC 3 cut(s) 689, 712, 747
FaeI CATG 2 cut(s) 197, 332
FaiI YATR 4 cut(s) 164, 195, 330, 943
FatI CATG 2 cut(s) 193, 328
FblI GTMKAC 1 cut(s) 784
Fnu4HI GCNGC 6 cut(s) 22, 300, 449, 587, 629, 775
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 6 cut(s) 22, 300, 449, 587, 629, 775
GluI GCNGC 6 cut(s) 22, 300, 449, 587, 629, 775
HaeIII GGCC 5 cut(s) 459, 500, 757, 807, 912
HapII CCGG 9 cut(s) 183, 533, 641, 666, 699, 758, 804, 880, 923
HgaI GACGC 4 cut(s) 557, 563, 578, 624
Hin1I GRCGYC 3 cut(s) 574, 616, 682
Hin1II CATG 2 cut(s) 197, 332
HincII GTYRAC 6 cut(s) 51, 785, 844, 858, 886, 900
HindII GTYRAC 6 cut(s) 51, 785, 844, 858, 886, 900
HinfI GANTC 7 cut(s) 32, 761, 781, 840, 854, 868, 896
HpaII CCGG 9 cut(s) 183, 533, 641, 666, 699, 758, 804, 880, 923
HphI GGTGA 6 cut(s) 59, 522, 614, 630, 737, 793
Hpy166II GTNNAC 9 cut(s) 51, 67, 785, 844, 858, 872, 886, 900, 928
Hpy188I TCNGA 7 cut(s) 58, 148, 223, 610, 662, 712, 795
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 9 cut(s) 51, 67, 785, 844, 858, 872, 886, 900, 928
Hpy99I CGWCG 3 cut(s) 573, 618, 684
HpyAV CCTTC 6 cut(s) 197, 393, 537, 615, 747, 808
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 2 cut(s) 682, 790
HpyCH4V TGCA 5 cut(s) 83, 116, 264, 586, 657
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 270, 489
HpyF3I CTNAG 2 cut(s) 833, 847
HpySE526I ACGT 2 cut(s) 682, 790
Hsp92I GRCGYC 3 cut(s) 574, 616, 682
Hsp92II CATG 2 cut(s) 197, 332
Kzo9I GATC 7 cut(s) 102, 223, 610, 662, 695, 822, 826
LmnI GCTCC 1 cut(s) 339
Lsp1109I GCAGC 6 cut(s) 33, 311, 435, 598, 615, 786
LweI GCATC 2 cut(s) 545, 666
MaeII ACGT 2 cut(s) 682, 790
MaeIII GTNAC 5 cut(s) 318, 590, 620, 673, 811
MalI GATC 7 cut(s) 104, 225, 612, 664, 697, 824, 828
MboI GATC 7 cut(s) 102, 223, 610, 662, 695, 822, 826
MboII GAAGA 7 cut(s) 182, 277, 427, 544, 569, 627, 640
MflI RGATCY 3 cut(s) 223, 662, 695
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 2 cut(s) 14, 280
MlyI GAGTC 5 cut(s) 790, 849, 863, 877, 905
MmeI TCCRAC 4 cut(s) 364, 394, 735, 942
MnlI CCTC 8 cut(s) 64, 299, 347, 410, 470, 515, 527, 941
MseI TTAA 1 cut(s) 315
MspA1I CMGCKG 2 cut(s) 24, 628
MspI CCGG 9 cut(s) 183, 533, 641, 666, 699, 758, 804, 880, 923
MspR9I CCNGG 4 cut(s) 71, 183, 881, 923
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 3 cut(s) 80, 270, 489
NciI CCSGG 3 cut(s) 183, 881, 923
NdeII GATC 7 cut(s) 102, 223, 610, 662, 695, 822, 826
NlaIII CATG 2 cut(s) 197, 332
NlaIV GGNNCC 1 cut(s) 808
NmeAIII GCCGAG 3 cut(s) 863, 877, 888
NmuCI GTSAC 5 cut(s) 318, 590, 620, 673, 811
PceI AGGCCT 1 cut(s) 459
PcsI WCGNNNNNNNCGW 2 cut(s) 577, 586
PfeI GAWTC 2 cut(s) 32, 761
PflFI GACNNNGTC 2 cut(s) 618, 789
PinAI ACCGGT 1 cut(s) 640
PkrI GCNGC 6 cut(s) 23, 301, 450, 588, 630, 776
PleI GAGTC 5 cut(s) 789, 848, 862, 876, 904
PpsI GAGTC 5 cut(s) 789, 848, 862, 876, 904
PsiI TTATAA 1 cut(s) 943
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 808
PspPI GGNCC 2 cut(s) 806, 925
PstI CTGCAG 1 cut(s) 588
PstNI CAGNNNCTG 1 cut(s) 631
PsuI RGATCY 3 cut(s) 223, 662, 695
PsyI GACNNNGTC 2 cut(s) 618, 789
PvuII CAGCTG 1 cut(s) 628
SacI GAGCTC 1 cut(s) 336
SalI GTCGAC 1 cut(s) 783
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 6 cut(s) 22, 300, 449, 587, 629, 775
Sau3AI GATC 7 cut(s) 102, 223, 610, 662, 695, 822, 826
Sau96I GGNCC 2 cut(s) 806, 925
SchI GAGTC 5 cut(s) 790, 849, 863, 877, 905
ScrFI CCNGG 4 cut(s) 71, 183, 881, 923
SduI GDGCHC 1 cut(s) 336
SfaNI GCATC 2 cut(s) 545, 666
SfcI CTRYAG 1 cut(s) 584
SinI GGWCC 1 cut(s) 925
Sse9I AATT 2 cut(s) 14, 280
SseBI AGGCCT 1 cut(s) 459
SsiI CCGC 2 cut(s) 24, 724
SstI GAGCTC 1 cut(s) 336
StuI AGGCCT 1 cut(s) 459
StyD4I CCNGG 4 cut(s) 69, 181, 879, 921
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 2 cut(s) 685, 793
TaqI TCGA 5 cut(s) 87, 613, 679, 784, 825
TaqII GACCGA 1 cut(s) 535
TasI AATT 2 cut(s) 14, 280
TfiI GAWTC 2 cut(s) 32, 761
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 2 cut(s) 139, 406
TseFI GTSAC 5 cut(s) 318, 590, 620, 673, 811
TseI GCWGC 6 cut(s) 21, 299, 448, 586, 628, 774
Tsp45I GTSAC 5 cut(s) 318, 590, 620, 673, 811
TspDTI ATGAA 5 cut(s) 182, 204, 375, 544, 640
TspRI CASTG 2 cut(s) 139, 406
Tth111I GACNNNGTC 2 cut(s) 618, 789
VpaK11BI GGWCC 1 cut(s) 925
XapI RAATTY 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 784
ZraI GACGTC 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.