Rmu_ssc0000442.1_g000030

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000442.1
OG0000388
Physical Location & Seq
Reverse (-)
165656 .. 166959
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000442.1_g000030.1.cds

Sequence Viewer

Length: 1125 bp
atgtacaaagacgaagacttgctgttctttgttgatctaggtaaagttccttgtggattcctgattggaaggaaattaagtagaaacagcgtgtcaagactcgagacctttgaaactaccgccttttccagccctacttttttctgctgtgtttctaagcaaataggagagcacggtcaagaacacaggatgactcacaaccaatttagcagcggtttagaatcggcaaacttggtggtgacctctgatccggtacaccaggcatggagtgcgattgagaaacaaaaacagattaatccgaatgcagaatcaactttgtgcaatgtaacccaagaatcaaatctagccatcatagcttttggcactccacttggctctcttcatgaagaaggcggcttggtttcatcgtcaactctcaaggccgacaattttattgacttggaactttttttcaccaaaagcaacgaaagtttctcaatcaatcaagcagcaatcaagctttttcgctccaactacgatgagctgaatcggaagaaaactgagctgatagagcttagtgagatttcactaataatcatcaccggacaatctgtgggaggcagtgtggctacgctcttcaccttatggttgttgaaaaggctagatttattgaaaaccaaacgccccctttgcattacttttggctcacccctagttggcgatgaacatctccgacaatgtgtgtcgcagttcgcaacatggaaatcttgcttcttgcatgtagcctctaaccaagatcctacacctaaactttttctaacccgaaatacgagtggggcttataagcctttcggggcattcctattatgctcttcatccggttgtgcttgctctgaggacccggacctcatcttggaacagttggtgacaaccaattctctaagtgcacaaaaccaagatcctaatatagagtttagttacagtcaagttttggaagatctcaagcacaaggcgttatgtaagagcagttccccgtctatcggaagggaaagagatccacttcaagcaagctttgtcacacaactactagcaattggagttttcacacaggtagcagagtttcactgcattttgatgatcatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

374

Amino Acids

41.37

Weight (kDa)

5.76

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
AciI CCGC 3 cut(s) 120, 213, 393
AclWI GGATC 4 cut(s) 242, 770, 932, 1028
AfaI GTAC 2 cut(s) 5, 255
AfiI CCNNNNNNNGG 3 cut(s) 695, 892, 1019
AgsI TTSAA 4 cut(s) 113, 634, 652, 1043
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 6 cut(s) 356, 499, 523, 544, 553, 1050
AluI AGCT 6 cut(s) 356, 499, 523, 544, 553, 1050
Alw21I GWGCWC 2 cut(s) 174, 928
Alw26I GTCTC 1 cut(s) 98
Alw44I GTGCAC 1 cut(s) 924
AlwI GGATC 4 cut(s) 242, 770, 932, 1028
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 1 cut(s) 420
ApaLI GTGCAC 1 cut(s) 924
ApeKI GCWGC 2 cut(s) 210, 488
AseI ATTAAT 1 cut(s) 294
AspS9I GGNCC 2 cut(s) 877, 883
AsuC2I CCSGG 1 cut(s) 881
AsuHPI GGTGA 6 cut(s) 250, 445, 571, 610, 678, 916
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 2 cut(s) 877, 883
BaeGI GKGCMC 1 cut(s) 928
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 2 cut(s) 174, 928
BbvI GCAGC 2 cut(s) 222, 500
BccI CCATC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 260
BclI TGATCA 1 cut(s) 1116
BcnI CCSGG 1 cut(s) 881
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 5 cut(s) 38, 344, 641, 692, 1067
BglII AGATCT 1 cut(s) 976
BisI GCNGC 3 cut(s) 211, 394, 489
BlsI GCNGC 3 cut(s) 212, 395, 490
Bme1390I CCNGG 2 cut(s) 260, 881
Bme18I GGWCC 2 cut(s) 877, 883
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 877, 883
BmiI GGNNCC 1 cut(s) 879
BmrFI CCNGG 2 cut(s) 260, 881
BpiI GAAGAC 1 cut(s) 21
BpuEI CTTGAG 2 cut(s) 401, 965
BpuMI CCSGG 1 cut(s) 881
BsaBI GATNNNNATC 1 cut(s) 705
BsaI GGTCTC 1 cut(s) 98
BsaWI WCCGGW 3 cut(s) 250, 581, 857
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 3 cut(s) 695, 892, 1019
Bse3DI GCAATG 1 cut(s) 328
Bse8I GATNNNNATC 1 cut(s) 705
BseBI CCWGG 1 cut(s) 260
BseGI GGATG 2 cut(s) 195, 854
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 3 cut(s) 695, 892, 1019
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 2 cut(s) 531, 864
BseSI GKGCMC 1 cut(s) 928
BseXI GCAGC 2 cut(s) 222, 500
BshFI GGCC 1 cut(s) 422
BsiHKAI GWGCWC 2 cut(s) 174, 928
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 4 cut(s) 251, 582, 858, 881
BslI CCNNNNNNNGG 3 cut(s) 695, 892, 1019
BsmAI GTCTC 1 cut(s) 98
BsmI GAATGC 2 cut(s) 307, 836
BsnI GGCC 1 cut(s) 422
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 174, 928
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 7 cut(s) 34, 247, 775, 937, 976, 1033, 1116
BspACI CCGC 3 cut(s) 120, 213, 393
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 2 cut(s) 532, 865
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 879
BspPI GGATC 4 cut(s) 242, 770, 932, 1028
BspQI GCTCTTC 2 cut(s) 620, 856
BspTNI GGTCTC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 328
BsrGI TGTACA 1 cut(s) 3
BssMI GATC 7 cut(s) 34, 247, 775, 937, 976, 1033, 1116
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 176, 900, 962
Bst6I CTCTTC 3 cut(s) 384, 620, 856
BstAPI GCANNNNNTGC 1 cut(s) 269
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 868, 1048
BstDEI CTNAG 5 cut(s) 156, 540, 554, 873, 920
BstEII GGTNACC 1 cut(s) 238
BstF5I GGATG 2 cut(s) 195, 854
BstKTI GATC 7 cut(s) 37, 250, 778, 940, 979, 1036, 1119
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 7 cut(s) 34, 247, 775, 937, 976, 1033, 1116
BstMWI GCNNNNNNNGC 4 cut(s) 269, 353, 550, 669
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 761
BstPI GGTNACC 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 258, 879
BstSLI GKGCMC 1 cut(s) 928
BstV1I GCAGC 2 cut(s) 222, 500
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 4 cut(s) 775, 937, 976, 1033
BstYI RGATCY 4 cut(s) 775, 937, 976, 1033
BsuRI GGCC 1 cut(s) 422
BtgZI GCGATG 1 cut(s) 714
BtsCI GGATG 2 cut(s) 195, 854
BtsI GCAGTG 2 cut(s) 607, 1102
BtsIMutI CAGTG 2 cut(s) 607, 1102
Cac8I GCNNGC 2 cut(s) 868, 1048
CciI TCATGA 1 cut(s) 382
Cfr13I GGNCC 2 cut(s) 877, 883
Csp6I GTAC 2 cut(s) 4, 254
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 4 cut(s) 264, 383, 738, 758
CviQI GTAC 2 cut(s) 4, 254
DdeI CTNAG 5 cut(s) 156, 540, 554, 873, 920
DpnI GATC 7 cut(s) 36, 249, 777, 939, 978, 1035, 1118
DpnII GATC 7 cut(s) 34, 247, 775, 937, 976, 1033, 1116
Eam1104I CTCTTC 3 cut(s) 384, 620, 856
EarI CTCTTC 3 cut(s) 384, 620, 856
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 2 cut(s) 877, 883
Eco88I CYCGRG 1 cut(s) 101
Eco91I GGTNACC 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 877
EcoO65I GGTNACC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 258
FaeI CATG 4 cut(s) 267, 386, 741, 761
FatI CATG 4 cut(s) 263, 382, 737, 757
FbaI TGATCA 1 cut(s) 1116
Fnu4HI GCNGC 3 cut(s) 211, 394, 489
FokI GGATG 2 cut(s) 202, 841
Fsp4HI GCNGC 3 cut(s) 211, 394, 489
FspBI CTAG 5 cut(s) 38, 344, 641, 692, 1067
GluI GCNGC 3 cut(s) 211, 394, 489
HaeIII GGCC 1 cut(s) 422
HapII CCGG 4 cut(s) 251, 582, 858, 881
Hin1II CATG 4 cut(s) 267, 386, 741, 761
HincII GTYRAC 1 cut(s) 411
HindII GTYRAC 1 cut(s) 411
HindIII AAGCTT 2 cut(s) 497, 1048
HinfI GANTC 7 cut(s) 57, 99, 193, 221, 308, 335, 526
HpaII CCGG 4 cut(s) 251, 582, 858, 881
HphI GGTGA 6 cut(s) 250, 445, 571, 610, 678, 916
Hpy166II GTNNAC 3 cut(s) 256, 411, 926
Hpy188I TCNGA 6 cut(s) 247, 300, 531, 713, 874, 1022
Hpy188III TCNNGA 5 cut(s) 61, 96, 103, 179, 383
Hpy8I GTNNAC 3 cut(s) 256, 411, 926
HpyAV CCTTC 3 cut(s) 63, 383, 1017
HpyCH4III ACNGT 3 cut(s) 176, 900, 962
HpyCH4V TGCA 6 cut(s) 305, 321, 672, 757, 926, 1107
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 353, 550, 669
HpyF3I CTNAG 5 cut(s) 156, 540, 554, 873, 920
Hsp92II CATG 4 cut(s) 267, 386, 741, 761
Ksp22I TGATCA 1 cut(s) 1116
Kzo9I GATC 7 cut(s) 34, 247, 775, 937, 976, 1033, 1116
LguI GCTCTTC 2 cut(s) 620, 856
LmnI GCTCC 1 cut(s) 512
Lsp1109I GCAGC 2 cut(s) 222, 500
MaeI CTAG 5 cut(s) 38, 344, 641, 692, 1067
MaeIII GTNAC 5 cut(s) 238, 325, 904, 956, 1054
MalI GATC 7 cut(s) 36, 249, 777, 939, 978, 1035, 1118
MboI GATC 7 cut(s) 34, 247, 775, 937, 976, 1033, 1116
MboII GAAGA 7 cut(s) 26, 371, 398, 544, 607, 843, 986
MfeI CAATTG 1 cut(s) 1071
MflI RGATCY 4 cut(s) 775, 937, 976, 1033
MhlI GDGCHC 2 cut(s) 174, 928
MluCI AATT 5 cut(s) 74, 203, 427, 913, 1071
MlyI GAGTC 2 cut(s) 93, 187
MmeI TCCRAC 2 cut(s) 534, 736
MnlI CCTC 5 cut(s) 253, 590, 775, 868, 896
MseI TTAA 2 cut(s) 77, 294
MslI CAYNNNNRTG 1 cut(s) 1112
MspA1I CMGCKG 1 cut(s) 213
MspI CCGG 4 cut(s) 251, 582, 858, 881
MspR9I CCNGG 2 cut(s) 260, 881
MunI CAATTG 1 cut(s) 1071
Mva1269I GAATGC 2 cut(s) 307, 836
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 4 cut(s) 269, 353, 550, 669
NciI CCSGG 1 cut(s) 881
NdeII GATC 7 cut(s) 34, 247, 775, 937, 976, 1033, 1116
NlaIII CATG 4 cut(s) 267, 386, 741, 761
NlaIV GGNNCC 1 cut(s) 879
NmuCI GTSAC 3 cut(s) 238, 904, 1054
NspI RCATGY 1 cut(s) 761
PaeR7I CTCGAG 1 cut(s) 101
PagI TCATGA 1 cut(s) 382
PciSI GCTCTTC 2 cut(s) 620, 856
PctI GAATGC 2 cut(s) 307, 836
PfeI GAWTC 5 cut(s) 57, 221, 308, 335, 526
PkrI GCNGC 3 cut(s) 212, 395, 490
PleI GAGTC 2 cut(s) 93, 187
PpsI GAGTC 2 cut(s) 93, 187
PpuMI RGGWCCY 1 cut(s) 877
PshBI ATTAAT 1 cut(s) 294
PsiI TTATAA 1 cut(s) 822
Psp5II RGGWCCY 1 cut(s) 877
Psp6I CCWGG 1 cut(s) 258
PspEI GGTNACC 1 cut(s) 238
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 879
PspPI GGNCC 2 cut(s) 877, 883
PspPPI RGGWCCY 1 cut(s) 877
PsrI GAACNNNNNNTAC 2 cut(s) 991, 1023
PsuI RGATCY 4 cut(s) 775, 937, 976, 1033
RsaI GTAC 2 cut(s) 5, 255
RsaNI GTAC 2 cut(s) 4, 254
RseI CAYNNNNRTG 1 cut(s) 1112
SapI GCTCTTC 2 cut(s) 620, 856
SaqAI TTAA 2 cut(s) 77, 294
SatI GCNGC 3 cut(s) 211, 394, 489
Sau3AI GATC 7 cut(s) 34, 247, 775, 937, 976, 1033, 1116
Sau96I GGNCC 2 cut(s) 877, 883
SchI GAGTC 2 cut(s) 93, 187
ScrFI CCNGG 2 cut(s) 260, 881
SduI GDGCHC 2 cut(s) 174, 928
Sfr274I CTCGAG 1 cut(s) 101
SinI GGWCC 2 cut(s) 877, 883
SlaI CTCGAG 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 1112
SmlI CTYRAG 3 cut(s) 101, 416, 980
SmoI CTYRAG 3 cut(s) 101, 416, 980
Sse9I AATT 5 cut(s) 74, 203, 427, 913, 1071
SsiI CCGC 3 cut(s) 120, 213, 393
SspMI CTAG 5 cut(s) 38, 344, 641, 692, 1067
StyD4I CCNGG 2 cut(s) 258, 879
TaaI ACNGT 3 cut(s) 176, 900, 962
TaqI TCGA 1 cut(s) 102
TasI AATT 5 cut(s) 74, 203, 427, 913, 1071
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 5 cut(s) 57, 221, 308, 335, 526
Tru1I TTAA 2 cut(s) 77, 294
Tru9I TTAA 2 cut(s) 77, 294
TscAI CASTG 2 cut(s) 607, 1109
TseFI GTSAC 3 cut(s) 238, 904, 1054
TseI GCWGC 2 cut(s) 210, 488
Tsp45I GTSAC 3 cut(s) 238, 904, 1054
TspDTI ATGAA 5 cut(s) 371, 393, 399, 717, 843
TspRI CASTG 2 cut(s) 607, 1109
VneI GTGCAC 1 cut(s) 924
VpaK11BI GGWCC 2 cut(s) 877, 883
VspI ATTAAT 1 cut(s) 294
XceI RCATGY 1 cut(s) 761
XhoI CTCGAG 1 cut(s) 101
XspI CTAG 5 cut(s) 38, 344, 641, 692, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.