Rmu_co8245087.1_g000001

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8245087.1
OG0000388
Physical Location & Seq
Forward (+)
1 .. 779
779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8245087.1_g000001.1.cds

Sequence Viewer

Length: 596 bp
cagcggtttggaatcggcgaactttgtgttgacctctgatccagttcaccaggcttggagtgcaatcgagaaacaaaaacagatcaatccaaatgcagagctgtctctgttcagtgaaatccaaccagaaaatcctaccatcatagcttttggaactccacccggctctcttcaaggacaagaaggcttggtttcattgtcaaaactcaaacaagacaactttgctcactttgagttcttgtgcaacaaaaccaacccaagtttctccctcaatcaagcagcaatcaaactctttcagtcacaataccgtgagctacttcaactgaaagaaaagttggtagagaatagcaaaagcaaaaccccttcattagtaatcatcactggacaatctgttggaggtagtgtggctacactcttcactctgtggctgctacaaggcctcaacttgtcaaaagccaaacggcccctttgcgttacttttggttctccccttgttggagataaacacctccaagaatgtgtgttacaattctcaacatggaagtcttgcttcttgcatattgtctctaaccaagatcctacacctcaacttttta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

198

Amino Acids

21.84

Weight (kDa)

7.66

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AclWI GGATC 2 cut(s) 33, 570
AdeI CACNNNGTG 1 cut(s) 424
AfiI CCNNNNNNNGG 1 cut(s) 495
AgsI TTSAA 2 cut(s) 174, 321
AjnI CCWGG 1 cut(s) 49
AjuI GAANNNNNNNTTGG 4 cut(s) 246, 278, 318, 350
AluBI AGCT 3 cut(s) 101, 147, 314
AluI AGCT 3 cut(s) 101, 147, 314
Alw26I GTCTC 2 cut(s) 109, 569
AlwI GGATC 2 cut(s) 33, 570
AoxI GGCC 2 cut(s) 437, 462
ApeKI GCWGC 2 cut(s) 279, 428
AspS9I GGNCC 1 cut(s) 463
AsuC2I CCSGG 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 39
BbvI GCAGC 2 cut(s) 291, 415
BccI CCATC 1 cut(s) 147
BceAI ACGGC 1 cut(s) 477
BciT130I CCWGG 1 cut(s) 51
BcnI CCSGG 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 109, 569
BisI GCNGC 2 cut(s) 280, 429
BlsI GCNGC 2 cut(s) 281, 430
Bme1390I CCNGG 2 cut(s) 51, 163
BmgT120I GGNCC 1 cut(s) 463
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 2 cut(s) 51, 163
BpuMI CCSGG 1 cut(s) 163
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bsc4I CCNNNNNNNGG 1 cut(s) 495
Bse1I ACTGG 2 cut(s) 42, 386
BseBI CCWGG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 495
BseNI ACTGG 2 cut(s) 42, 386
BseXI GCAGC 2 cut(s) 291, 415
BshFI GGCC 2 cut(s) 439, 464
BsiSI CCGG 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 495
BsmAI GTCTC 2 cut(s) 109, 569
BsnI GGCC 2 cut(s) 439, 464
Bsp143I GATC 3 cut(s) 38, 82, 575
BspACI CCGC 1 cut(s) 4
BspANI GGCC 2 cut(s) 439, 464
BspLI GGNNCC 1 cut(s) 465
BspPI GGATC 2 cut(s) 33, 570
BsrI ACTGG 2 cut(s) 42, 386
BssMI GATC 3 cut(s) 38, 82, 575
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 309
Bst6I CTCTTC 2 cut(s) 175, 420
BstKTI GATC 3 cut(s) 41, 85, 578
BstMAI GTCTC 2 cut(s) 109, 569
BstMBI GATC 3 cut(s) 38, 82, 575
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 49, 161
BstV1I GCAGC 2 cut(s) 291, 415
BstX2I RGATCY 1 cut(s) 575
BstYI RGATCY 1 cut(s) 575
BsuRI GGCC 2 cut(s) 439, 464
BtsIMutI CAGTG 2 cut(s) 119, 379
Cfr13I GGNCC 1 cut(s) 463
CviAII CATG 1 cut(s) 538
DpnI GATC 3 cut(s) 40, 84, 577
DpnII GATC 3 cut(s) 38, 82, 575
DraIII CACNNNGTG 1 cut(s) 424
Eam1104I CTCTTC 2 cut(s) 175, 420
EarI CTCTTC 2 cut(s) 175, 420
Eco147I AGGCCT 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 541
FaiI YATR 3 cut(s) 144, 539, 559
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FatI CATG 1 cut(s) 537
Fnu4HI GCNGC 2 cut(s) 280, 429
Fsp4HI GCNGC 2 cut(s) 280, 429
GluI GCNGC 2 cut(s) 280, 429
HaeIII GGCC 2 cut(s) 439, 464
HapII CCGG 1 cut(s) 163
Hin1II CATG 1 cut(s) 541
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 1 cut(s) 12
HpaII CCGG 1 cut(s) 163
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 2 cut(s) 31, 47
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 2 cut(s) 31, 47
HpyAV CCTTC 2 cut(s) 177, 373
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4V TGCA 4 cut(s) 63, 96, 244, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
Hsp92II CATG 1 cut(s) 541
Kzo9I GATC 3 cut(s) 38, 82, 575
LpnPI CCDG 6 cut(s) 36, 55, 63, 139, 176, 367
Lsp1109I GCAGC 2 cut(s) 291, 415
MaeIII GTNAC 3 cut(s) 298, 473, 523
MalI GATC 3 cut(s) 40, 84, 577
MboI GATC 3 cut(s) 38, 82, 575
MboII GAAGA 2 cut(s) 162, 407
MflI RGATCY 1 cut(s) 575
MluCI AATT 1 cut(s) 528
MmeI TCCRAC 3 cut(s) 146, 374, 476
MnlI CCTC 6 cut(s) 44, 279, 390, 450, 519, 595
MspA1I CMGCKG 1 cut(s) 4
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 2 cut(s) 51, 163
MvaI CCWGG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 60
NciI CCSGG 1 cut(s) 163
NdeII GATC 3 cut(s) 38, 82, 575
NlaIII CATG 1 cut(s) 541
NlaIV GGNNCC 1 cut(s) 465
NmuCI GTSAC 1 cut(s) 298
PceI AGGCCT 1 cut(s) 439
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 2 cut(s) 281, 430
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 1 cut(s) 463
PsuI RGATCY 1 cut(s) 575
SatI GCNGC 2 cut(s) 280, 429
Sau3AI GATC 3 cut(s) 38, 82, 575
Sau96I GGNCC 1 cut(s) 463
ScrFI CCNGG 2 cut(s) 51, 163
SetI ASST 7 cut(s) 36, 103, 149, 316, 401, 511, 587
Sse9I AATT 1 cut(s) 528
SseBI AGGCCT 1 cut(s) 439
SsiI CCGC 1 cut(s) 4
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 2 cut(s) 49, 161
TaaI ACNGT 1 cut(s) 309
TaqI TCGA 1 cut(s) 67
TasI AATT 1 cut(s) 528
TfiI GAWTC 1 cut(s) 12
TscAI CASTG 2 cut(s) 119, 386
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 2 cut(s) 279, 428
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 184, 355
TspRI CASTG 2 cut(s) 119, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.