pycom111g03070

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0000388
Physical Location & Seq
Forward (+)
1867041 .. 1869832
2792 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g03070.1

Sequence Viewer

Length: 1311 bp
ATGAACGACCAAATTAGCAGTGCTGGGCTTGAACTAGCAAATGTGCTGGTGACTTCTCCTCCCCTGCACCAGTCATGGGACGCGGTTCAGAAGCAAAAGCTCCAGACAGCTGCTGATCCGAATGCACAAATGGCCTTATACATTAATGAAACCAAGCACTCAAACACCATCATCATATCTTTTCTTACTTCACCCGTCACGCCTCACGATCAACCAGTGATGGTTTCGTCGTTGACTCTCAAGGACGCAAATTTTCCTCTCTTTGAGTTTTTGTGCAGCAAAAACACCCCAAGTTTCTCCGTCAATGAATTGGCAATCGAATTCTTCAAATTTAACCACAAAAACCTCGATAATTTGCGAAAAGAGCTGGTAGCTAGCAGCAAAACCTCACGGATAGTTATCACTGGACATTCTTTTGGAGGTGCTGTGGCTACCCTTTTCACCTTATGGCTGCTAGAAAGCCTCGACTTTTCGAAAGCAAAACGCCCCCTTTGCATCACTTTCGGTTCACCCTTGATCGGTGACGAAAAACTCCGACAATGTGTGTTGGAATTCTCAACATGGACTTCTTGCTTTTTGAATGTAGCCTCCATCAATGATCCTGTACCTAAAGTCTTCCTAACTTCGCAAGCAAGTGGTTATAAGCCTTTCGGAACATTCCTACTGTGCTCCTCTTCGGGTGGTTCTTGCTTTGAGGACGCTGATGCCATTTTGCAACTATTGGTGGAAACCAGCTCTCAGTGTGTTCAAAATCCAGTTCCGAATTCAGGGACTCAGTTGTTTGATTACGGAAAGATTTTGAATGATCTCAAGACCAAGGCATTGTCTAGAGATGTCTTTGAGTTGGTTGAAGAGGATAGAGTTCCACTTAAAGCTGGAATTAAAACACAGTTGGCAGCAATATTAGGAGTTCTCAGCTCACAGTCATTGCAGCAGCAACAACCCAAAATTGAATTCGAAAGTCTGATAAAAAAGATGGTCACTCACGAACGTAAAATAGCGATCCAGAAGACGAAGGTTTACAGTTCTTTCTTGAAATTGAATGACATTAAAAAGTACATGGCCAACATGGAATGGTACAAGAAGGAGTCCAAAGACATGGGAATTGGATACTATGACAGGTACAGAAACAAGCGTTACGCGAGTGACATTAATGCCGAAGAGTACAAGAAGAAGCTCTCAAACTATTGGCTTGACACGGTTACAGAAGCTGCGAACAAGCCCCAGACAGAAGGAGCCGCAATGCGTGTCCGTTTTCTTTTTGCTGGAACGAATTACAGAAGGATCGATCGAACCGCTTCACATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

437

Amino Acids

48.96

Weight (kDa)

8.8

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 84 - 207 1e-19 Lipase (class 3)
EDS1_EP PF18117 355 - 429 1e-20 Enhanced disease susceptibility 1 protein EP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 642
AccII CGCG 2 cut(s) 83, 1142
AciI CCGC 3 cut(s) 83, 1239, 1296
AclWI GGATC 4 cut(s) 110, 593, 997, 1292
AcoI YGGCCR 1 cut(s) 1062
AcsI RAATTY 6 cut(s) 250, 320, 329, 551, 763, 953
AfaI GTAC 5 cut(s) 606, 1058, 1079, 1124, 1166
AfiI CCNNNNNNNGG 3 cut(s) 76, 518, 767
AgsI TTSAA 9 cut(s) 32, 328, 580, 749, 802, 851, 953, 1036, 1042
AjuI GAANNNNNNNTTGG 2 cut(s) 938, 970
AluBI AGCT 9 cut(s) 100, 110, 367, 374, 735, 875, 918, 1177, 1211
AluI AGCT 9 cut(s) 100, 110, 367, 374, 735, 875, 918, 1177, 1211
Alw21I GWGCWC 1 cut(s) 671
AlwI GGATC 4 cut(s) 110, 593, 997, 1292
AlwNI CAGNNNCTG 2 cut(s) 113, 1211
AoxI GGCC 2 cut(s) 132, 1062
ApeKI GCWGC 8 cut(s) 110, 276, 378, 451, 896, 931, 934, 1211
ApoI RAATTY 6 cut(s) 250, 320, 329, 551, 763, 953
AseI ATTAAT 2 cut(s) 144, 1152
Asp700I GAANNNNTTC 1 cut(s) 1297
AsuHPI GGTGA 5 cut(s) 61, 183, 433, 501, 533
AsuII TTCGAA 2 cut(s) 473, 957
AsuNHI GCTAGC 1 cut(s) 374
BalI TGGCCA 1 cut(s) 1064
BbsI GAAGAC 2 cut(s) 607, 1016
Bbv12I GWGCWC 1 cut(s) 671
BbvI GCAGC 8 cut(s) 97, 288, 390, 438, 908, 943, 946, 1198
BccI CCATC 4 cut(s) 176, 214, 599, 970
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BciVI GTATCC 1 cut(s) 1103
BfaI CTAG 4 cut(s) 35, 375, 455, 828
BfuI GTATCC 1 cut(s) 1103
BisI GCNGC 9 cut(s) 111, 277, 379, 452, 897, 932, 935, 1212, 1239
BlsI GCNGC 9 cut(s) 112, 278, 380, 453, 898, 933, 936, 1213, 1240
BmiI GGNNCC 1 cut(s) 1237
BmsI GCATC 2 cut(s) 504, 694
BmtI GCTAGC 1 cut(s) 378
BpiI GAAGAC 2 cut(s) 607, 1016
BpmI CTGGAG 1 cut(s) 86
Bpu14I TTCGAA 2 cut(s) 473, 957
BpuEI CTTGAG 2 cut(s) 224, 794
Bsa29I ATCGAT 1 cut(s) 1287
BsaBI GATNNNNATC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 816
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 411, 441
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 518, 767
Bse1I ACTGG 4 cut(s) 70, 215, 409, 755
Bse3DI GCAATG 3 cut(s) 926, 1248, 1303
Bse8I GATNNNNATC 1 cut(s) 398
BseCI ATCGAT 1 cut(s) 1287
BseDI CCNNGG 1 cut(s) 816
BseJI GATNNNNATC 1 cut(s) 398
BseLI CCNNNNNNNGG 3 cut(s) 76, 518, 767
BseMI GCAATG 3 cut(s) 926, 1248, 1303
BseMII CTCAG 3 cut(s) 752, 788, 928
BseNI ACTGG 4 cut(s) 70, 215, 409, 755
BseRI GAGGAG 2 cut(s) 48, 661
BseXI GCAGC 8 cut(s) 97, 288, 390, 438, 908, 943, 946, 1198
BseYI CCCAGC 1 cut(s) 23
BsgI GTGCAG 2 cut(s) 50, 295
Bsh1236I CGCG 2 cut(s) 83, 1142
Bsh1285I CGRYCG 1 cut(s) 1291
BshFI GGCC 2 cut(s) 134, 1064
BshVI ATCGAT 1 cut(s) 1287
BsiEI CGRYCG 1 cut(s) 1291
BsiHKAI GWGCWC 1 cut(s) 671
BslFI GGGAC 2 cut(s) 92, 784
BslI CCNNNNNNNGG 3 cut(s) 76, 518, 767
BsmFI GGGAC 2 cut(s) 92, 784
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 2 cut(s) 134, 1064
Bsp119I TTCGAA 2 cut(s) 473, 957
Bsp1286I GDGCHC 1 cut(s) 671
Bsp143I GATC 8 cut(s) 115, 208, 516, 598, 805, 1002, 1284, 1288
BspACI CCGC 3 cut(s) 83, 1239, 1296
BspANI GGCC 2 cut(s) 134, 1064
BspCNI CTCAG 3 cut(s) 751, 787, 927
BspDI ATCGAT 1 cut(s) 1287
BspFNI CGCG 2 cut(s) 83, 1142
BspLI GGNNCC 1 cut(s) 1237
BspOI GCTAGC 1 cut(s) 378
BspPI GGATC 4 cut(s) 110, 593, 997, 1292
BspT104I TTCGAA 2 cut(s) 473, 957
BsrDI GCAATG 3 cut(s) 926, 1248, 1303
BsrI ACTGG 4 cut(s) 70, 215, 409, 755
BssECI CCNNGG 1 cut(s) 816
BssMI GATC 8 cut(s) 115, 208, 516, 598, 805, 1002, 1284, 1288
BssT1I CCWWGG 1 cut(s) 816
Bst4CI ACNGT 5 cut(s) 666, 891, 924, 1025, 1201
Bst6I CTCTTC 3 cut(s) 679, 846, 1155
BstBI TTCGAA 2 cut(s) 473, 957
BstC8I GCNNGC 2 cut(s) 376, 630
BstDEI CTNAG 3 cut(s) 738, 774, 914
BstFNI CGCG 2 cut(s) 83, 1142
BstKTI GATC 8 cut(s) 118, 211, 519, 601, 808, 1005, 1287, 1291
BstMBI GATC 8 cut(s) 115, 208, 516, 598, 805, 1002, 1284, 1288
BstMCI CGRYCG 1 cut(s) 1291
BstMWI GCNNNNNNNGC 3 cut(s) 131, 364, 492
BstUI CGCG 2 cut(s) 83, 1142
BstV1I GCAGC 8 cut(s) 97, 288, 390, 438, 908, 943, 946, 1198
BstV2I GAAGAC 2 cut(s) 607, 1016
BstXI CCANNNNNNTGG 1 cut(s) 1099
Bsu15I ATCGAT 1 cut(s) 1287
BsuI GTATCC 1 cut(s) 1103
BsuRI GGCC 2 cut(s) 134, 1064
BsuTUI ATCGAT 1 cut(s) 1287
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 4 cut(s) 25, 222, 402, 746
Cac8I GCNNGC 2 cut(s) 376, 630
CaiI CAGNNNCTG 2 cut(s) 113, 1211
ClaI ATCGAT 1 cut(s) 1287
CseI GACGC 3 cut(s) 89, 254, 707
Csp6I GTAC 5 cut(s) 605, 1057, 1078, 1123, 1165
CviAII CATG 5 cut(s) 75, 561, 1060, 1069, 1099
CviQI GTAC 5 cut(s) 605, 1057, 1078, 1123, 1165
DdeI CTNAG 3 cut(s) 738, 774, 914
DpnI GATC 8 cut(s) 117, 210, 518, 600, 807, 1004, 1286, 1290
DpnII GATC 8 cut(s) 115, 208, 516, 598, 805, 1002, 1284, 1288
EaeI YGGCCR 1 cut(s) 1062
Eam1104I CTCTTC 3 cut(s) 679, 846, 1155
EarI CTCTTC 3 cut(s) 679, 846, 1155
Eco130I CCWWGG 1 cut(s) 816
EcoRI GAATTC 4 cut(s) 320, 551, 763, 953
EcoT14I CCWWGG 1 cut(s) 816
ErhI CCWWGG 1 cut(s) 816
FaeI CATG 5 cut(s) 78, 564, 1063, 1072, 1102
FaqI GGGAC 2 cut(s) 92, 784
FatI CATG 5 cut(s) 74, 560, 1059, 1068, 1098
Fnu4HI GCNGC 9 cut(s) 111, 277, 379, 452, 897, 932, 935, 1212, 1239
Fsp4HI GCNGC 9 cut(s) 111, 277, 379, 452, 897, 932, 935, 1212, 1239
FspBI CTAG 4 cut(s) 35, 375, 455, 828
GluI GCNGC 9 cut(s) 111, 277, 379, 452, 897, 932, 935, 1212, 1239
GsaI CCCAGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 86
HaeIII GGCC 2 cut(s) 134, 1064
HgaI GACGC 3 cut(s) 89, 254, 707
Hin1II CATG 5 cut(s) 78, 564, 1063, 1072, 1102
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 3 cut(s) 235, 772, 1088
HphI GGTGA 5 cut(s) 61, 183, 433, 501, 533
Hpy166II GTNNAC 3 cut(s) 234, 509, 1021
Hpy188I TCNGA 6 cut(s) 90, 120, 536, 653, 762, 966
Hpy188III TCNNGA 7 cut(s) 103, 206, 811, 828, 986, 1006, 1033
Hpy8I GTNNAC 3 cut(s) 234, 509, 1021
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 4 cut(s) 1009, 1078, 1226, 1275
HpyCH4III ACNGT 5 cut(s) 666, 891, 924, 1025, 1201
HpyCH4IV ACGT 1 cut(s) 991
HpyCH4V TGCA 6 cut(s) 67, 125, 276, 495, 715, 931
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 364, 492
HpyF3I CTNAG 3 cut(s) 738, 774, 914
HpySE526I ACGT 1 cut(s) 991
Hsp92II CATG 5 cut(s) 78, 564, 1063, 1072, 1102
Kzo9I GATC 8 cut(s) 115, 208, 516, 598, 805, 1002, 1284, 1288
LmnI GCTCC 3 cut(s) 105, 674, 1235
Lsp1109I GCAGC 8 cut(s) 97, 288, 390, 438, 908, 943, 946, 1198
LweI GCATC 2 cut(s) 504, 694
MaeI CTAG 4 cut(s) 35, 375, 455, 828
MaeII ACGT 1 cut(s) 991
MaeIII GTNAC 7 cut(s) 49, 196, 521, 979, 1136, 1145, 1201
MalI GATC 8 cut(s) 117, 210, 518, 600, 807, 1004, 1286, 1290
MboI GATC 8 cut(s) 115, 208, 516, 598, 805, 1002, 1284, 1288
MboII GAAGA 7 cut(s) 316, 607, 666, 863, 1021, 1172, 1183
MhlI GDGCHC 1 cut(s) 671
MlsI TGGCCA 1 cut(s) 1064
MluNI TGGCCA 1 cut(s) 1064
MlyI GAGTC 3 cut(s) 229, 766, 1097
MmeI TCCRAC 2 cut(s) 528, 559
Mox20I TGGCCA 1 cut(s) 1064
MroXI GAANNNNTTC 1 cut(s) 1297
MscI TGGCCA 1 cut(s) 1064
MseI TTAA 6 cut(s) 144, 333, 870, 882, 1050, 1152
Msp20I TGGCCA 1 cut(s) 1064
MspA1I CMGCKG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 127
MvnI CGCG 2 cut(s) 83, 1142
MwoI GCNNNNNNNGC 3 cut(s) 131, 364, 492
NdeII GATC 8 cut(s) 115, 208, 516, 598, 805, 1002, 1284, 1288
NheI GCTAGC 1 cut(s) 374
NlaIII CATG 5 cut(s) 78, 564, 1063, 1072, 1102
NlaIV GGNNCC 1 cut(s) 1237
NmuCI GTSAC 5 cut(s) 49, 196, 521, 979, 1145
NspV TTCGAA 2 cut(s) 473, 957
PctI GAATGC 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 1297
PkrI GCNGC 9 cut(s) 112, 278, 380, 453, 898, 933, 936, 1213, 1240
Ple19I CGATCG 1 cut(s) 1291
PleI GAGTC 3 cut(s) 229, 766, 1096
PpsI GAGTC 3 cut(s) 229, 766, 1096
PshBI ATTAAT 2 cut(s) 144, 1152
PsiI TTATAA 1 cut(s) 642
PspFI CCCAGC 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 1237
PstNI CAGNNNCTG 2 cut(s) 113, 1211
PvuI CGATCG 1 cut(s) 1291
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 5 cut(s) 606, 1058, 1079, 1124, 1166
RsaNI GTAC 5 cut(s) 605, 1057, 1078, 1123, 1165
SaqAI TTAA 6 cut(s) 144, 333, 870, 882, 1050, 1152
SatI GCNGC 9 cut(s) 111, 277, 379, 452, 897, 932, 935, 1212, 1239
Sau3AI GATC 8 cut(s) 115, 208, 516, 598, 805, 1002, 1284, 1288
SchI GAGTC 3 cut(s) 229, 766, 1097
SduI GDGCHC 1 cut(s) 671
SfaNI GCATC 2 cut(s) 504, 694
SfuI TTCGAA 2 cut(s) 473, 957
SmlI CTYRAG 2 cut(s) 239, 809
SmoI CTYRAG 2 cut(s) 239, 809
SsiI CCGC 3 cut(s) 83, 1239, 1296
SspI AATATT 1 cut(s) 903
SspMI CTAG 4 cut(s) 35, 375, 455, 828
StyI CCWWGG 1 cut(s) 816
TaaI ACNGT 5 cut(s) 666, 891, 924, 1025, 1201
TaiI ACGT 1 cut(s) 994
TaqI TCGA 7 cut(s) 318, 348, 465, 473, 957, 1287, 1291
TatI WGTACW 2 cut(s) 1056, 1164
TauI GCSGC 1 cut(s) 1241
Tru1I TTAA 6 cut(s) 144, 333, 870, 882, 1050, 1152
Tru9I TTAA 6 cut(s) 144, 333, 870, 882, 1050, 1152
TscAI CASTG 4 cut(s) 25, 222, 409, 746
TseFI GTSAC 5 cut(s) 49, 196, 521, 979, 1145
TseI GCWGC 8 cut(s) 110, 276, 378, 451, 896, 931, 934, 1211
Tsp45I GTSAC 5 cut(s) 49, 196, 521, 979, 1145
TspDTI ATGAA 3 cut(s) 17, 162, 321
TspGWI ACGGA 4 cut(s) 289, 406, 804, 1241
TspRI CASTG 4 cut(s) 25, 222, 409, 746
VspI ATTAAT 2 cut(s) 144, 1152
XapI RAATTY 6 cut(s) 250, 320, 329, 551, 763, 953
XbaI TCTAGA 1 cut(s) 827
XmnI GAANNNNTTC 1 cut(s) 1297
XspI CTAG 4 cut(s) 35, 375, 455, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.