Rh2BG631600

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000388
Physical Location & Seq
Reverse (-)
85398854 .. 85399546
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG631600.1

Sequence Viewer

Length: 693 bp
ATGTTTCAGCTGGTAGAGAATAGCAAGGGCAAAACCCCACCATTAATAATCATCACTGGACAATCTGTGGGAGGTAGTATAGCTACACTCTTCACCTTATGGTTGCTAGAAGGCCTCAACTTGTCGAAAGCCAAACGCCCCTTTTGCATTACTTTCGGTTCTCCCCTTGTTGGCGATGAACACCTTCAAAAATGTGTGTTAGAATTCTCAACTTGGAAATATTGCTTCTTGCATATAGTCTCCAACCAAGATCATACTCCTAAAATCTTCATGTCCCAAAATACAACCGGTGCTTATAAGCCATTTGGGACATTCTTATTATGCTCGGCTTCGGGTTGTGCTTGCTCTGAGGACCTGGATTTCGTTTTGGAACAATTTGGGACAACCAATTCTCACAGTGCTCAAACTCAAGATCCTAATTTGGGGTTCCCCTATGGACAAATTTTGGAGGATCTCAAGCGCAAGGCATTATGTAATGTTTTCAAGTCCATTGGAGGGGAAAGAGATCCACTTGAAGCTAGCATAATCGCACAACTCCTAGCAATTGGAGCAGTCTCACCGGTAGCCAAGTTTCAGTACGAATTGATGATAACAAATGATTTCACAGAAATTTACAGAAAATATCAGCTTGTGTATTTCTATATTTGGTTTGGAGTGTTAAAAAAGAAAAGATCAAATAGTATAACAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

230

Amino Acids

25.71

Weight (kDa)

8.11

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 14 - 91 4.7e-14 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 297
AclWI GGATC 3 cut(s) 407, 459, 500
AcsI RAATTY 3 cut(s) 203, 441, 609
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 3 cut(s) 170, 422, 495
AgeI ACCGGT 2 cut(s) 287, 559
AgsI TTSAA 3 cut(s) 188, 484, 515
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 4 cut(s) 10, 83, 518, 628
AluI AGCT 4 cut(s) 10, 83, 518, 628
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 2 cut(s) 244, 559
AlwI GGATC 3 cut(s) 407, 459, 500
AoxI GGCC 1 cut(s) 112
ApoI RAATTY 3 cut(s) 203, 441, 609
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AseI ATTAAT 1 cut(s) 44
AsiGI ACCGGT 2 cut(s) 287, 559
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 85, 549
AsuNHI GCTAGC 1 cut(s) 518
AvaII GGWCC 1 cut(s) 352
Bbv12I GWGCWC 1 cut(s) 403
BcgI CGANNNNNNTGC 2 cut(s) 136, 170
BciT130I CCWGG 1 cut(s) 356
BcoDI GTCTC 2 cut(s) 244, 559
BfaI CTAG 3 cut(s) 107, 519, 539
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 356
BmtI GCTAGC 1 cut(s) 522
BpuEI CTTGAG 2 cut(s) 393, 440
BsaWI WCCGGW 2 cut(s) 287, 559
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 422, 495
Bse118I RCCGGY 2 cut(s) 287, 559
Bse1I ACTGG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 356
BseLI CCNNNNNNNGG 3 cut(s) 170, 422, 495
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 61
BshFI GGCC 1 cut(s) 114
BshTI ACCGGT 2 cut(s) 287, 559
BsiHKAI GWGCWC 1 cut(s) 403
BsiSI CCGG 2 cut(s) 288, 560
BslFI GGGAC 3 cut(s) 259, 322, 394
BslI CCNNNNNNNGG 3 cut(s) 170, 422, 495
BsmAI GTCTC 2 cut(s) 244, 559
BsmFI GGGAC 3 cut(s) 259, 322, 394
BsnI GGCC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 5 cut(s) 250, 412, 451, 505, 671
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 428
BspOI GCTAGC 1 cut(s) 522
BspPI GGATC 3 cut(s) 407, 459, 500
BsrFI RCCGGY 2 cut(s) 287, 559
BsrI ACTGG 1 cut(s) 61
BssAI RCCGGY 2 cut(s) 287, 559
BssMI GATC 5 cut(s) 250, 412, 451, 505, 671
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 398, 688
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 343, 520
BstDEI CTNAG 1 cut(s) 348
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 5 cut(s) 253, 415, 454, 508, 674
BstMAI GTCTC 2 cut(s) 244, 559
BstMBI GATC 5 cut(s) 250, 412, 451, 505, 671
BstMWI GCNNNNNNNGC 2 cut(s) 144, 548
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 354
BstX2I RGATCY 3 cut(s) 412, 451, 505
BstYI RGATCY 3 cut(s) 412, 451, 505
BsuRI GGCC 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 54, 403
Cac8I GCNNGC 2 cut(s) 343, 520
CfoI GCGC 1 cut(s) 462
Cfr10I RCCGGY 2 cut(s) 287, 559
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 1 cut(s) 577
CspAI ACCGGT 2 cut(s) 287, 559
CviAII CATG 1 cut(s) 271
CviJI RGCY 9 cut(s) 10, 83, 114, 131, 301, 329, 518, 566, 628
CviKI_1 RGCY 9 cut(s) 10, 83, 114, 131, 301, 329, 518, 566, 628
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 1 cut(s) 348
DpnI GATC 5 cut(s) 252, 414, 453, 507, 673
DpnII GATC 5 cut(s) 250, 412, 451, 505, 671
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 352
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 354
FaeI CATG 1 cut(s) 274
FaqI GGGAC 3 cut(s) 259, 322, 394
FatI CATG 1 cut(s) 270
FspBI CTAG 3 cut(s) 107, 519, 539
GlaI GCGC 1 cut(s) 461
HaeIII GGCC 1 cut(s) 114
HapII CCGG 2 cut(s) 288, 560
HhaI GCGC 1 cut(s) 462
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HpaII CCGG 2 cut(s) 288, 560
HphI GGTGA 2 cut(s) 85, 549
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 1 cut(s) 410
HpyAV CCTTC 2 cut(s) 104, 194
HpyCH4III ACNGT 2 cut(s) 398, 688
HpyCH4V TGCA 2 cut(s) 147, 232
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 548
HpyF3I CTNAG 1 cut(s) 348
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 1 cut(s) 460
Kzo9I GATC 5 cut(s) 250, 412, 451, 505, 671
LmnI GCTCC 1 cut(s) 548
LpnPI CCDG 5 cut(s) 42, 301, 341, 368, 573
MaeI CTAG 3 cut(s) 107, 519, 539
MalI GATC 5 cut(s) 252, 414, 453, 507, 673
MboI GATC 5 cut(s) 250, 412, 451, 505, 671
MboII GAAGA 2 cut(s) 82, 259
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 3 cut(s) 412, 451, 505
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 8 cut(s) 203, 374, 388, 418, 441, 543, 581, 609
MmeI TCCRAC 1 cut(s) 267
MnlI CCTC 5 cut(s) 65, 125, 343, 442, 488
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 2 cut(s) 44, 659
MspA1I CMGCKG 1 cut(s) 10
MspI CCGG 2 cut(s) 288, 560
MspR9I CCNGG 1 cut(s) 356
MunI CAATTG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 144, 548
NdeII GATC 5 cut(s) 250, 412, 451, 505, 671
NheI GCTAGC 1 cut(s) 518
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 1 cut(s) 428
NmeAIII GCCGAG 1 cut(s) 305
PceI AGGCCT 1 cut(s) 114
PdmI GAANNNNTTC 1 cut(s) 183
PinAI ACCGGT 2 cut(s) 287, 559
PpuMI RGGWCCY 1 cut(s) 352
PshBI ATTAAT 1 cut(s) 44
PsiI TTATAA 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 1 cut(s) 428
PspPI GGNCC 1 cut(s) 352
PspPPI RGGWCCY 1 cut(s) 352
PsuI RGATCY 3 cut(s) 412, 451, 505
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
SaqAI TTAA 2 cut(s) 44, 659
Sau3AI GATC 5 cut(s) 250, 412, 451, 505, 671
Sau96I GGNCC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 1 cut(s) 403
SetI ASST 8 cut(s) 12, 76, 85, 98, 186, 357, 520, 630
SinI GGWCC 1 cut(s) 352
SmlI CTYRAG 2 cut(s) 408, 455
SmoI CTYRAG 2 cut(s) 408, 455
Sse9I AATT 8 cut(s) 203, 374, 388, 418, 441, 543, 581, 609
SseBI AGGCCT 1 cut(s) 114
SspI AATATT 1 cut(s) 221
SspMI CTAG 3 cut(s) 107, 519, 539
StuI AGGCCT 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 398, 688
TaqI TCGA 1 cut(s) 125
TasI AATT 8 cut(s) 203, 374, 388, 418, 441, 543, 581, 609
Tru1I TTAA 2 cut(s) 44, 659
Tru9I TTAA 2 cut(s) 44, 659
TscAI CASTG 2 cut(s) 61, 403
TspDTI ATGAA 2 cut(s) 192, 259
TspRI CASTG 2 cut(s) 61, 403
VpaK11BI GGWCC 1 cut(s) 352
VspI ATTAAT 1 cut(s) 44
XapI RAATTY 3 cut(s) 203, 441, 609
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 3 cut(s) 107, 519, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.