Rh2AG620700

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000388
Physical Location & Seq
Reverse (-)
84443880 .. 84445153
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG620700.1

Sequence Viewer

Length: 936 bp
ATGCCAGAAAGCTTTAAGATGCCCAAAAAAAACCGGTTTAGCAGCGGCTTAGAATCGGGGAATCTTGTGGTGAACTCTGATCCAGTACACCAGGCATGGTGTGCTATTGAGCAACAAAGACAGATTAATCCAAATGCAGAGCCATCCTTGTACAATGAAATCCAACCAGAAAATCCAATCATCATAGCTTTTGGCACTCCACCTGGCTCTCTTCAGGGACAAGAAGGCTTGGTTTCATCAAAAGATTTTGCTCACTTTGAATTTTTGTGCAACAAAAGCAATCCAGTTTTCTGCATCAATGAAGCAGCAATCAAACTATTTCAGTCACATTACAGTGACCTCCTCGTTCTGAAAAATAAGCTGGTAGAGAATAGCAAGGGCAAAACCCCACCATTAATAATCATCACTGGACAATCTGTGGGAGGTAGTATAGCTACACTCTTCACCTTATGGTTGCTAGAAGGCCTCAACTTGTCGAAAGCCAAACGCCCCTTTTGCATTACTTTCGGTTCTCCCCTTGTTGGCGATGAACACCTTCAAAAATGTGTGTTAGAATTCTCAACTTGGAAATATTGCTTCTTGCATATAGTCTCCAACCAAGATCATACTCCTAAAATCTTCATGTCCCAAAATACAACTGGTGCTTATAAGCCATTTGGGACATTCTTATTATGCTCGGCTTCGGGTTGTGCTTGCTCTGAGGACCCGGATTTCGTTTTGGAACAATTTGCGACAACCAATTCTCACAGTGCTCGAACTCAAGATCCTAATTTGGGGCTCCCCTATGGACAAATTTTGGAGGATCTCAAGCGCAAGGCATTATGTAATGTTTTCAAGTCCATTGGAGGGGAAAGAGATCCACTTGAAGCTAGCATAATCACACAACTCCTAGCAATTGGAGCAGTCTCACCGGTAGCCAAGTTTCAGTACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

311

Amino Acids

34.25

Weight (kDa)

6.65

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 97 - 208 1.2e-14 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
AciI CCGC 1 cut(s) 45
AclWI GGATC 4 cut(s) 74, 758, 810, 851
AcsI RAATTY 3 cut(s) 260, 554, 792
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 3 cut(s) 87, 152, 929
AfiI CCNNNNNNNGG 3 cut(s) 521, 773, 846
AgeI ACCGGT 2 cut(s) 33, 910
AgsI TTSAA 4 cut(s) 260, 539, 835, 866
AjnI CCWGG 2 cut(s) 90, 202
AloI GAACNNNNNNTCC 2 cut(s) 748, 780
AluBI AGCT 5 cut(s) 12, 188, 361, 434, 869
AluI AGCT 5 cut(s) 12, 188, 361, 434, 869
Alw21I GWGCWC 1 cut(s) 754
Alw26I GTCTC 2 cut(s) 595, 910
AlwI GGATC 4 cut(s) 74, 758, 810, 851
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 2 cut(s) 42, 305
ApoI RAATTY 3 cut(s) 260, 554, 792
ArsI GACNNNNNNTTYG 2 cut(s) 695, 727
AseI ATTAAT 2 cut(s) 126, 395
AsiGI ACCGGT 2 cut(s) 33, 910
Asp700I GAANNNNTTC 1 cut(s) 534
AspLEI GCGC 1 cut(s) 813
AspS9I GGNCC 1 cut(s) 703
AsuC2I CCSGG 1 cut(s) 707
AsuHPI GGTGA 3 cut(s) 82, 436, 900
AsuNHI GCTAGC 1 cut(s) 869
AvaII GGWCC 1 cut(s) 703
BanII GRGCYC 1 cut(s) 780
Bbv12I GWGCWC 1 cut(s) 754
BbvI GCAGC 2 cut(s) 54, 317
BccI CCATC 1 cut(s) 151
BcgI CGANNNNNNTGC 2 cut(s) 487, 521
BciT130I CCWGG 2 cut(s) 92, 204
BcnI CCSGG 1 cut(s) 707
BcoDI GTCTC 2 cut(s) 595, 910
BfaI CTAG 3 cut(s) 458, 870, 890
BisI GCNGC 3 cut(s) 43, 46, 306
BlsI GCNGC 3 cut(s) 44, 47, 307
Bme1390I CCNGG 3 cut(s) 92, 204, 707
Bme18I GGWCC 1 cut(s) 703
BmgT120I GGNCC 1 cut(s) 703
BmiI GGNNCC 2 cut(s) 705, 779
BmrFI CCNGG 3 cut(s) 92, 204, 707
BmsI GCATC 2 cut(s) 9, 303
BmtI GCTAGC 1 cut(s) 873
BpuEI CTTGAG 2 cut(s) 744, 791
BpuMI CCSGG 1 cut(s) 707
BsaWI WCCGGW 2 cut(s) 33, 910
Bsc4I CCNNNNNNNGG 3 cut(s) 521, 773, 846
Bse118I RCCGGY 2 cut(s) 33, 910
Bse1I ACTGG 4 cut(s) 83, 284, 412, 643
BseBI CCWGG 2 cut(s) 92, 204
BseGI GGATG 1 cut(s) 143
BseLI CCNNNNNNNGG 3 cut(s) 521, 773, 846
BseMII CTCAG 1 cut(s) 690
BseNI ACTGG 4 cut(s) 83, 284, 412, 643
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 2 cut(s) 54, 317
BshFI GGCC 1 cut(s) 465
BshTI ACCGGT 2 cut(s) 33, 910
BsiHKAI GWGCWC 1 cut(s) 754
BsiSI CCGG 3 cut(s) 34, 707, 911
BslFI GGGAC 3 cut(s) 231, 610, 673
BslI CCNNNNNNNGG 3 cut(s) 521, 773, 846
BsmAI GTCTC 2 cut(s) 595, 910
BsmFI GGGAC 3 cut(s) 231, 610, 673
BsnI GGCC 1 cut(s) 465
Bsp1286I GDGCHC 2 cut(s) 754, 780
Bsp1407I TGTACA 1 cut(s) 150
Bsp143I GATC 5 cut(s) 79, 601, 763, 802, 856
BspACI CCGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 1 cut(s) 691
BspLI GGNNCC 2 cut(s) 705, 779
BspOI GCTAGC 1 cut(s) 873
BspPI GGATC 4 cut(s) 74, 758, 810, 851
BsrFI RCCGGY 2 cut(s) 33, 910
BsrGI TGTACA 1 cut(s) 150
BsrI ACTGG 4 cut(s) 83, 284, 412, 643
BssAI RCCGGY 2 cut(s) 33, 910
BssMI GATC 5 cut(s) 79, 601, 763, 802, 856
Bst2UI CCWGG 2 cut(s) 92, 204
Bst4CI ACNGT 2 cut(s) 335, 749
Bst6I CTCTTC 2 cut(s) 216, 446
BstAPI GCANNNNNTGC 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 694, 871
BstDEI CTNAG 2 cut(s) 49, 699
BstF5I GGATG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 813
BstKTI GATC 5 cut(s) 82, 604, 766, 805, 859
BstMAI GTCTC 2 cut(s) 595, 910
BstMBI GATC 5 cut(s) 79, 601, 763, 802, 856
BstMWI GCNNNNNNNGC 4 cut(s) 101, 276, 495, 899
BstNI CCWGG 2 cut(s) 92, 204
BstSCI CCNGG 3 cut(s) 90, 202, 705
BstV1I GCAGC 2 cut(s) 54, 317
BstX2I RGATCY 3 cut(s) 763, 802, 856
BstYI RGATCY 3 cut(s) 763, 802, 856
BsuRI GGCC 1 cut(s) 465
BtgZI GCGATG 1 cut(s) 540
BtsCI GGATG 1 cut(s) 143
BtsIMutI CAGTG 3 cut(s) 340, 405, 754
Cac8I GCNNGC 2 cut(s) 694, 871
CfoI GCGC 1 cut(s) 813
Cfr10I RCCGGY 2 cut(s) 33, 910
Cfr13I GGNCC 1 cut(s) 703
Csp6I GTAC 3 cut(s) 86, 151, 928
CspAI ACCGGT 2 cut(s) 33, 910
CviAII CATG 2 cut(s) 96, 622
CviQI GTAC 3 cut(s) 86, 151, 928
DdeI CTNAG 2 cut(s) 49, 699
DpnI GATC 5 cut(s) 81, 603, 765, 804, 858
DpnII GATC 5 cut(s) 79, 601, 763, 802, 856
Eam1104I CTCTTC 2 cut(s) 216, 446
EarI CTCTTC 2 cut(s) 216, 446
Eco147I AGGCCT 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 780
Eco47I GGWCC 1 cut(s) 703
Eco57I CTGAAG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 703
EcoRI GAATTC 1 cut(s) 554
EcoRII CCWGG 2 cut(s) 90, 202
EcoT38I GRGCYC 1 cut(s) 780
FaeI CATG 2 cut(s) 99, 625
FaqI GGGAC 3 cut(s) 231, 610, 673
FatI CATG 2 cut(s) 95, 621
Fnu4HI GCNGC 3 cut(s) 43, 46, 306
FokI GGATG 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 3 cut(s) 43, 46, 306
FspBI CTAG 3 cut(s) 458, 870, 890
GlaI GCGC 1 cut(s) 812
GluI GCNGC 3 cut(s) 43, 46, 306
HaeIII GGCC 1 cut(s) 465
HapII CCGG 3 cut(s) 34, 707, 911
HhaI GCGC 1 cut(s) 813
Hin1II CATG 2 cut(s) 99, 625
Hin6I GCGC 1 cut(s) 811
HinP1I GCGC 1 cut(s) 811
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 2 cut(s) 53, 61
HpaII CCGG 3 cut(s) 34, 707, 911
HphI GGTGA 3 cut(s) 82, 436, 900
Hpy166II GTNNAC 2 cut(s) 73, 88
Hpy188I TCNGA 3 cut(s) 79, 351, 700
Hpy188III TCNNGA 1 cut(s) 761
Hpy8I GTNNAC 2 cut(s) 73, 88
HpyAV CCTTC 3 cut(s) 218, 455, 545
HpyCH4III ACNGT 2 cut(s) 335, 749
HpyCH4V TGCA 5 cut(s) 137, 270, 294, 498, 583
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 276, 495, 899
HpyF3I CTNAG 2 cut(s) 49, 699
Hsp92II CATG 2 cut(s) 99, 625
HspAI GCGC 1 cut(s) 811
Kzo9I GATC 5 cut(s) 79, 601, 763, 802, 856
LmnI GCTCC 2 cut(s) 783, 899
Lsp1109I GCAGC 2 cut(s) 54, 317
LweI GCATC 2 cut(s) 9, 303
MaeI CTAG 3 cut(s) 458, 870, 890
MaeIII GTNAC 2 cut(s) 324, 335
MalI GATC 5 cut(s) 81, 603, 765, 804, 858
MboI GATC 5 cut(s) 79, 601, 763, 802, 856
MboII GAAGA 3 cut(s) 203, 433, 610
MfeI CAATTG 1 cut(s) 894
MflI RGATCY 3 cut(s) 763, 802, 856
MhlI GDGCHC 2 cut(s) 754, 780
MluCI AATT 7 cut(s) 260, 554, 725, 739, 769, 792, 894
MmeI TCCRAC 2 cut(s) 187, 618
MnlI CCTC 7 cut(s) 350, 353, 416, 476, 694, 793, 839
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 3 cut(s) 15, 126, 395
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 3 cut(s) 34, 707, 911
MspR9I CCNGG 3 cut(s) 92, 204, 707
MunI CAATTG 1 cut(s) 894
MvaI CCWGG 2 cut(s) 92, 204
MwoI GCNNNNNNNGC 4 cut(s) 101, 276, 495, 899
NciI CCSGG 1 cut(s) 707
NdeII GATC 5 cut(s) 79, 601, 763, 802, 856
NheI GCTAGC 1 cut(s) 869
NlaIII CATG 2 cut(s) 99, 625
NlaIV GGNNCC 2 cut(s) 705, 779
NmeAIII GCCGAG 1 cut(s) 656
NmuCI GTSAC 2 cut(s) 324, 335
PceI AGGCCT 1 cut(s) 465
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 2 cut(s) 53, 61
PinAI ACCGGT 2 cut(s) 33, 910
PkrI GCNGC 3 cut(s) 44, 47, 307
PpuMI RGGWCCY 1 cut(s) 703
PshBI ATTAAT 2 cut(s) 126, 395
PsiI TTATAA 1 cut(s) 648
Psp5II RGGWCCY 1 cut(s) 703
Psp6I CCWGG 2 cut(s) 90, 202
PspGI CCWGG 2 cut(s) 90, 202
PspN4I GGNNCC 2 cut(s) 705, 779
PspPI GGNCC 1 cut(s) 703
PspPPI RGGWCCY 1 cut(s) 703
PsuI RGATCY 3 cut(s) 763, 802, 856
RsaI GTAC 3 cut(s) 87, 152, 929
RsaNI GTAC 3 cut(s) 86, 151, 928
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 3 cut(s) 15, 126, 395
SatI GCNGC 3 cut(s) 43, 46, 306
Sau3AI GATC 5 cut(s) 79, 601, 763, 802, 856
Sau96I GGNCC 1 cut(s) 703
ScrFI CCNGG 3 cut(s) 92, 204, 707
SduI GDGCHC 2 cut(s) 754, 780
SfaNI GCATC 2 cut(s) 9, 303
SinI GGWCC 1 cut(s) 703
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 2 cut(s) 759, 806
SmoI CTYRAG 2 cut(s) 759, 806
Sse9I AATT 7 cut(s) 260, 554, 725, 739, 769, 792, 894
SseBI AGGCCT 1 cut(s) 465
SsiI CCGC 1 cut(s) 45
SspI AATATT 1 cut(s) 572
SspMI CTAG 3 cut(s) 458, 870, 890
StuI AGGCCT 1 cut(s) 465
StyD4I CCNGG 3 cut(s) 90, 202, 705
TaaI ACNGT 2 cut(s) 335, 749
TaqI TCGA 2 cut(s) 476, 754
TasI AATT 7 cut(s) 260, 554, 725, 739, 769, 792, 894
TatI WGTACW 3 cut(s) 85, 150, 927
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 2 cut(s) 53, 61
Tru1I TTAA 3 cut(s) 15, 126, 395
Tru9I TTAA 3 cut(s) 15, 126, 395
TscAI CASTG 3 cut(s) 340, 412, 754
TseFI GTSAC 2 cut(s) 324, 335
TseI GCWGC 2 cut(s) 42, 305
Tsp45I GTSAC 2 cut(s) 324, 335
TspDTI ATGAA 5 cut(s) 171, 225, 315, 543, 610
TspRI CASTG 3 cut(s) 340, 412, 754
VpaK11BI GGWCC 1 cut(s) 703
VspI ATTAAT 2 cut(s) 126, 395
XapI RAATTY 3 cut(s) 260, 554, 792
XcmI CCANNNNNNNNNTGG 1 cut(s) 635
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 3 cut(s) 458, 870, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.