Rh2DG643900

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000388
Physical Location & Seq
Reverse (-)
87085648 .. 87091642
5995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG643900.1

Sequence Viewer

Length: 1356 bp
ATGTTTCAGCTGGTAGAGAATAGCAAAAGCAAAACCCCTTCATTAGTAATCATCACTGGACAATCTGTTGGAGGTAGTGTGGCTACACTCTTCACTTTGTGGCTGCTACAAGGGCTCAACTCGTCAAAAGCCAAACGCCCCCTTTGCGTTACTTTTGGTTCTCCCCTTGTTGGAGATGAACACCTCCAACAATGTGTGTTACAATTCTCAACATGGAAGTCTTGCTTCTTGCATATTGTCTCTAACCAAGACCCTACACCTCAACTTTTTATATCACGAAATCCGGGTGCTTATAAGCCATTTGGGACATTCCTATTATGCGCAGCTTCCGGTTGTGCTTGCTTTGAGGATCCAGATATCATTTTGGAACAGTTGGAGAAAACCAACTCTCAAAATCAAGAGTGCCATTATGGAAAAATTTTGGGAGATCTCAAGTGCAAGTCATTGTGTAATGTTCTCAAGTCTACTGAAGCTGAAAGAGATTCACTCCAAGCAAGCCTTATCACACAACTTCAAGCAATTGGAATTCTCTCGCAGCCAAGTACAAAGATCCAGAGTCTGATTCTAAGGATGAAGAAACATGAAACAAAGTTACTAATTCAGAAGAAGAAGAATTCAGATTCGGACAAGAGGTTGAATGAAATGAAAGTTTACATGGCCTTTTTGGAGTGGTACAAGAAAGACTCCAAACATCACAAAATAGGATACTATGACAGATACAGAAACCAGGGGAATATAAGCGACGTTAATGTTAATGAGTATAAGAAAAAACTCATGAATTATTGGGAGGACTCTGTCACAGAAGTAGAGAATAAGCCCCAGATCGAAGGAGCTAATTTTCGGGTTCGTTGGCTTTGGGCGGGCACAAACTACAGAAGGATGGTTGAGCCACTTCACATTGCAGACTACTACAGGGATGGTGGAAAGAACTATAAAACTGATGGGAAAAGGCCTAAACAGTTCATTCTGTTGGAGGAATGGTTGAAGAAAAAAGACAAACCTCAAGAAGTCCCAAGCAAATCGAAGAGAGAGAACGTGGGGTCTAGTTTGAATGAGGATTCGTGTTTTTGGGCGCATGTTGAAGAAGCTCGCATCCGATGCAAACTGCTAAAGAATGAAGCAATTACTAGTGAAGAGAAAGAAGCTGCCATAAAAGAATTAAGAAAGTTTGAGGCGGATGTGTACGATGCCATTAAGAAGTATGCATTGTCTCCTGAGATTTTCTTGGACAAGAGCAGTTTTATGCTGTGGTGGAAGGAGTACAAGGGAGTTGTTGAGCAGCCCTACTCCTCATTGCTGCTGGAATTCATGAAGGATCGCAGTTACGAGGCGTACAAGGAGGGGAAGTTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

451

Amino Acids

52.14

Weight (kDa)

8.95

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 6 - 90 8.4e-14 Lipase (class 3)
EDS1_EP PF18117 222 - 435 7.1e-69 Enhanced disease susceptibility 1 protein EP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
Acc16I TGCGCA 1 cut(s) 322
AccI GTMKAC 1 cut(s) 464
AciI CCGC 2 cut(s) 860, 1175
AclWI GGATC 4 cut(s) 344, 357, 544, 1323
AcsI RAATTY 4 cut(s) 417, 525, 613, 1304
AcuI CTGAAG 1 cut(s) 489
AdeI CACNNNGTG 1 cut(s) 99
AfaI GTAC 5 cut(s) 544, 674, 1184, 1262, 1334
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 5 cut(s) 515, 637, 985, 1051, 1082
AhlI ACTAGT 1 cut(s) 1127
AjnI CCWGG 1 cut(s) 726
AloI GAACNNNNNNTCC 1 cut(s) 1331
AluBI AGCT 6 cut(s) 10, 326, 473, 833, 1088, 1145
AluI AGCT 6 cut(s) 10, 326, 473, 833, 1088, 1145
Alw26I GTCTC 2 cut(s) 244, 1215
AlwI GGATC 4 cut(s) 344, 357, 544, 1323
AlwNI CAGNNNCTG 1 cut(s) 559
AoxI GGCC 2 cut(s) 657, 950
ApeKI GCWGC 6 cut(s) 103, 323, 535, 1145, 1279, 1297
ApoI RAATTY 4 cut(s) 417, 525, 613, 1304
AspLEI GCGC 2 cut(s) 323, 1075
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 1342
BaeGI GKGCMC 1 cut(s) 866
BamHI GGATCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 117
BbvI GCAGC 6 cut(s) 90, 335, 547, 1132, 1284, 1291
BccI CCATC 3 cut(s) 874, 911, 935
BciT130I CCWGG 1 cut(s) 728
BciVI GTATCC 1 cut(s) 698
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 244, 1215
BcuI ACTAGT 1 cut(s) 1127
BfaI CTAG 2 cut(s) 1044, 1128
BfmI CTRYAG 2 cut(s) 871, 910
BfuI GTATCC 1 cut(s) 698
BglII AGATCT 1 cut(s) 427
BisI GCNGC 6 cut(s) 104, 324, 536, 1146, 1280, 1298
BlsI GCNGC 6 cut(s) 105, 325, 537, 1147, 1281, 1299
Bme1390I CCNGG 2 cut(s) 285, 728
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 2 cut(s) 285, 728
BmsI GCATC 3 cut(s) 1088, 1101, 1177
BplI GAGNNNNNCTC 2 cut(s) 471, 503
BpuEI CTTGAG 3 cut(s) 416, 443, 987
BpuMI CCSGG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 727
BsaWI WCCGGW 1 cut(s) 329
BsaXI ACNNNNNCTCC 5 cut(s) 63, 93, 965, 995, 1331
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 61
Bse3DI GCAATG 2 cut(s) 897, 1292
BseBI CCWGG 1 cut(s) 728
BseDI CCNNGG 1 cut(s) 727
BseGI GGATG 5 cut(s) 576, 885, 922, 1092, 1183
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMI GCAATG 2 cut(s) 897, 1292
BseMII CTCAG 1 cut(s) 1206
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 1279
BseSI GKGCMC 1 cut(s) 866
BseXI GCAGC 6 cut(s) 90, 335, 547, 1132, 1284, 1291
BshFI GGCC 2 cut(s) 659, 952
BsiSI CCGG 2 cut(s) 284, 330
BslFI GGGAC 2 cut(s) 319, 995
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 2 cut(s) 244, 1215
BsmFI GGGAC 2 cut(s) 319, 995
BsnI GGCC 2 cut(s) 659, 952
Bsp1286I GDGCHC 2 cut(s) 117, 866
Bsp143I GATC 5 cut(s) 349, 427, 549, 822, 1315
BspACI CCGC 2 cut(s) 860, 1175
BspANI GGCC 2 cut(s) 659, 952
BspCNI CTCAG 1 cut(s) 1207
BspHI TCATGA 2 cut(s) 774, 1308
BspLI GGNNCC 1 cut(s) 351
BspPI GGATC 4 cut(s) 344, 357, 544, 1323
BsrDI GCAATG 2 cut(s) 897, 1292
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 727
BssMI GATC 5 cut(s) 349, 427, 549, 822, 1315
Bst2UI CCWGG 1 cut(s) 728
Bst4CI ACNGT 2 cut(s) 372, 960
Bst6I CTCTTC 3 cut(s) 95, 1019, 1128
BstAPI GCANNNNNTGC 1 cut(s) 1098
BstC8I GCNNGC 4 cut(s) 340, 496, 862, 1090
BstDEI CTNAG 2 cut(s) 566, 1215
BstF5I GGATG 5 cut(s) 576, 885, 922, 1092, 1183
BstHHI GCGC 2 cut(s) 323, 1075
BstKTI GATC 5 cut(s) 352, 430, 552, 825, 1318
BstMAI GTCTC 2 cut(s) 244, 1215
BstMBI GATC 5 cut(s) 349, 427, 549, 822, 1315
BstMWI GCNNNNNNNGC 3 cut(s) 112, 144, 1098
BstNI CCWGG 1 cut(s) 728
BstNSI RCATGY 1 cut(s) 1079
BstSCI CCNGG 2 cut(s) 283, 726
BstSFI CTRYAG 2 cut(s) 871, 910
BstSLI GKGCMC 1 cut(s) 866
BstV1I GCAGC 6 cut(s) 90, 335, 547, 1132, 1284, 1291
BstX2I RGATCY 3 cut(s) 349, 427, 549
BstYI RGATCY 3 cut(s) 349, 427, 549
BsuI GTATCC 1 cut(s) 698
BsuRI GGCC 2 cut(s) 659, 952
BtsCI GGATG 5 cut(s) 576, 885, 922, 1092, 1183
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 4 cut(s) 340, 496, 862, 1090
CaiI CAGNNNCTG 1 cut(s) 559
CciI TCATGA 2 cut(s) 774, 1308
CfoI GCGC 2 cut(s) 323, 1075
Csp6I GTAC 5 cut(s) 543, 673, 1183, 1261, 1333
CviAII CATG 6 cut(s) 213, 581, 655, 775, 1076, 1309
CviQI GTAC 5 cut(s) 543, 673, 1183, 1261, 1333
DdeI CTNAG 2 cut(s) 566, 1215
DpnI GATC 5 cut(s) 351, 429, 551, 824, 1317
DpnII GATC 5 cut(s) 349, 427, 549, 822, 1315
DraIII CACNNNGTG 1 cut(s) 99
Eam1104I CTCTTC 3 cut(s) 95, 1019, 1128
EarI CTCTTC 3 cut(s) 95, 1019, 1128
EciI GGCGGA 1 cut(s) 1190
Eco147I AGGCCT 1 cut(s) 952
Eco24I GRGCYC 1 cut(s) 117
Eco32I GATATC 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 489
EcoRI GAATTC 3 cut(s) 525, 613, 1304
EcoRII CCWGG 1 cut(s) 726
EcoRV GATATC 1 cut(s) 358
EcoT22I ATGCAT 1 cut(s) 1207
EcoT38I GRGCYC 1 cut(s) 117
FaeI CATG 6 cut(s) 216, 584, 658, 778, 1079, 1312
FalI AAGNNNNNCTT 4 cut(s) 209, 241, 483, 515
FaqI GGGAC 2 cut(s) 319, 995
FatI CATG 6 cut(s) 212, 580, 654, 774, 1075, 1308
FauI CCCGC 1 cut(s) 853
FblI GTMKAC 1 cut(s) 464
Fnu4HI GCNGC 6 cut(s) 104, 324, 536, 1146, 1280, 1298
FokI GGATG 5 cut(s) 583, 892, 929, 1079, 1190
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 6 cut(s) 104, 324, 536, 1146, 1280, 1298
FspBI CTAG 2 cut(s) 1044, 1128
FspI TGCGCA 1 cut(s) 322
GlaI GCGC 2 cut(s) 322, 1074
GluI GCNGC 6 cut(s) 104, 324, 536, 1146, 1280, 1298
HaeIII GGCC 2 cut(s) 659, 952
HapII CCGG 2 cut(s) 284, 330
HhaI GCGC 2 cut(s) 323, 1075
Hin1II CATG 6 cut(s) 216, 584, 658, 778, 1079, 1312
Hin6I GCGC 2 cut(s) 321, 1073
HinP1I GCGC 2 cut(s) 321, 1073
HinfI GANTC 7 cut(s) 482, 556, 562, 620, 683, 791, 1058
HpaII CCGG 2 cut(s) 284, 330
HphI GGTGA 1 cut(s) 1342
Hpy166II GTNNAC 4 cut(s) 465, 652, 1183, 1350
Hpy188I TCNGA 5 cut(s) 561, 603, 619, 625, 1097
Hpy188III TCNNGA 8 cut(s) 276, 353, 398, 553, 775, 1004, 1214, 1309
Hpy8I GTNNAC 4 cut(s) 465, 652, 1183, 1350
Hpy99I CGWCG 1 cut(s) 746
HpyAV CCTTC 5 cut(s) 48, 821, 870, 1249, 1306
HpyCH4III ACNGT 2 cut(s) 372, 960
HpyCH4IV ACGT 2 cut(s) 744, 1035
HpyCH4V TGCA 5 cut(s) 232, 438, 902, 1101, 1205
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 144, 1098
HpyF3I CTNAG 2 cut(s) 566, 1215
HpySE526I ACGT 2 cut(s) 744, 1035
Hsp92II CATG 6 cut(s) 216, 584, 658, 778, 1079, 1312
HspAI GCGC 2 cut(s) 321, 1073
Kzo9I GATC 5 cut(s) 349, 427, 549, 822, 1315
LmnI GCTCC 1 cut(s) 830
Lsp1109I GCAGC 6 cut(s) 90, 335, 547, 1132, 1284, 1291
LweI GCATC 3 cut(s) 1088, 1101, 1177
MaeI CTAG 2 cut(s) 1044, 1128
MaeII ACGT 2 cut(s) 744, 1035
MaeIII GTNAC 5 cut(s) 148, 198, 591, 796, 1322
MalI GATC 5 cut(s) 351, 429, 551, 824, 1317
MboI GATC 5 cut(s) 349, 427, 549, 822, 1315
MboII GAAGA 9 cut(s) 82, 586, 616, 619, 622, 997, 1036, 1094, 1145
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 3 cut(s) 349, 427, 549
MhlI GDGCHC 2 cut(s) 117, 866
MlyI GAGTC 3 cut(s) 565, 677, 785
MmeI TCCRAC 5 cut(s) 49, 151, 211, 354, 951
Mph1103I ATGCAT 1 cut(s) 1207
MseI TTAA 4 cut(s) 747, 753, 1160, 1194
MspA1I CMGCKG 1 cut(s) 10
MspI CCGG 2 cut(s) 284, 330
MspR9I CCNGG 2 cut(s) 285, 728
MunI CAATTG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 728
MwoI GCNNNNNNNGC 3 cut(s) 112, 144, 1098
NciI CCSGG 1 cut(s) 285
NdeII GATC 5 cut(s) 349, 427, 549, 822, 1315
NlaIII CATG 6 cut(s) 216, 584, 658, 778, 1079, 1312
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 796
NsbI TGCGCA 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 1207
NspI RCATGY 1 cut(s) 1079
PagI TCATGA 2 cut(s) 774, 1308
PceI AGGCCT 1 cut(s) 952
PfeI GAWTC 4 cut(s) 482, 562, 620, 1058
PflFI GACNNNGTC 1 cut(s) 794
PkrI GCNGC 6 cut(s) 105, 325, 537, 1147, 1281, 1299
PleI GAGTC 3 cut(s) 564, 677, 785
PpsI GAGTC 3 cut(s) 564, 677, 785
PsiI TTATAA 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 726
PspGI CCWGG 1 cut(s) 726
PspN4I GGNNCC 1 cut(s) 351
PstNI CAGNNNCTG 1 cut(s) 559
PsuI RGATCY 3 cut(s) 349, 427, 549
PsyI GACNNNGTC 1 cut(s) 794
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 5 cut(s) 544, 674, 1184, 1262, 1334
RsaNI GTAC 5 cut(s) 543, 673, 1183, 1261, 1333
SaqAI TTAA 4 cut(s) 747, 753, 1160, 1194
SatI GCNGC 6 cut(s) 104, 324, 536, 1146, 1280, 1298
Sau3AI GATC 5 cut(s) 349, 427, 549, 822, 1315
SchI GAGTC 3 cut(s) 565, 677, 785
ScrFI CCNGG 2 cut(s) 285, 728
SduI GDGCHC 2 cut(s) 117, 866
SfaNI GCATC 3 cut(s) 1088, 1101, 1177
SfcI CTRYAG 2 cut(s) 871, 910
SmlI CTYRAG 3 cut(s) 431, 458, 1002
SmoI CTYRAG 3 cut(s) 431, 458, 1002
SpeI ACTAGT 1 cut(s) 1127
SseBI AGGCCT 1 cut(s) 952
SsiI CCGC 2 cut(s) 860, 1175
SspMI CTAG 2 cut(s) 1044, 1128
StuI AGGCCT 1 cut(s) 952
StyD4I CCNGG 2 cut(s) 283, 726
TaaI ACNGT 2 cut(s) 372, 960
TaiI ACGT 2 cut(s) 747, 1038
TaqI TCGA 2 cut(s) 825, 1022
TatI WGTACW 2 cut(s) 542, 1260
TfiI GAWTC 4 cut(s) 482, 562, 620, 1058
Tru1I TTAA 4 cut(s) 747, 753, 1160, 1194
Tru9I TTAA 4 cut(s) 747, 753, 1160, 1194
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 1 cut(s) 796
TseI GCWGC 6 cut(s) 103, 323, 535, 1145, 1279, 1297
Tsp45I GTSAC 1 cut(s) 796
TspRI CASTG 1 cut(s) 61
Tth111I GACNNNGTC 1 cut(s) 794
XapI RAATTY 4 cut(s) 417, 525, 613, 1304
XceI RCATGY 1 cut(s) 1079
XmiI GTMKAC 1 cut(s) 464
XspI CTAG 2 cut(s) 1044, 1128
Zsp2I ATGCAT 1 cut(s) 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.