Rroxscaffold_2G00081290

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000388
Physical Location & Seq
Forward (+)
4300137 .. 4308431
8295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081290.1

Sequence Viewer

Length: 282 bp
ATGGTTGCTAGAAGGCCTCAACTTGTCGAAAGCCAAATGCCCCTTTTGCATTACTTTCGGTTCTCCCTTGTTGGCGATGAACACCTTCGAACATGTGTATTAGAATTCTCGACTTGGAAATATTGCTTCTTGCATATAGTCTCCAACCAAGATCATACTCCTAAAATCTTTATGTCCCAAAATACAACTGGTGCTTATAAGCCATTTGGGACATTCTTATTATGCTCGGCTTCGGGTTGTGCTTGCTGCGAGGACCGGATTTCGTTTTGGAACAATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

93

Amino Acids

10.79

Weight (kDa)

7.64

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AcsI RAATTY 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 145
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 104
Asp700I GAANNNNTTC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 253
AsuII TTCGAA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 1 cut(s) 9
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 253
Bpu14I TTCGAA 1 cut(s) 88
BsaWI WCCGGW 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 233
BshFI GGCC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 256
BslFI GGGAC 2 cut(s) 160, 223
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 2 cut(s) 160, 223
BsnI GGCC 1 cut(s) 16
Bsp119I TTCGAA 1 cut(s) 88
Bsp143I GATC 1 cut(s) 151
BspANI GGCC 1 cut(s) 16
BspT104I TTCGAA 1 cut(s) 88
BsrI ACTGG 1 cut(s) 193
BssMI GATC 1 cut(s) 151
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 244
BstKTI GATC 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNSI RCATGY 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 253
CviAII CATG 1 cut(s) 93
CviJI RGCY 4 cut(s) 16, 33, 202, 230
CviKI_1 RGCY 4 cut(s) 16, 33, 202, 230
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eco147I AGGCCT 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 104
FaeI CATG 1 cut(s) 96
FaiI YATR 7 cut(s) 94, 135, 137, 156, 173, 198, 223
FaqI GGGAC 2 cut(s) 160, 223
FatI CATG 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 247
Fsp4HI GCNGC 1 cut(s) 247
FspBI CTAG 1 cut(s) 9
GluI GCNGC 1 cut(s) 247
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 256
Hin1II CATG 1 cut(s) 96
HpaII CCGG 1 cut(s) 256
Hpy188III TCNNGA 1 cut(s) 109
HpyAV CCTTC 2 cut(s) 6, 95
HpyCH4V TGCA 2 cut(s) 49, 133
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
Hsp92II CATG 1 cut(s) 96
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 2 cut(s) 174, 269
Lsp1109I GCAGC 1 cut(s) 233
MaeI CTAG 1 cut(s) 9
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MluCI AATT 2 cut(s) 104, 274
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 2 cut(s) 27, 244
MroXI GAANNNNTTC 1 cut(s) 84
MspI CCGG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 1 cut(s) 151
NlaIII CATG 1 cut(s) 96
NmeAIII GCCGAG 1 cut(s) 206
NspI RCATGY 1 cut(s) 96
NspV TTCGAA 1 cut(s) 88
PceI AGGCCT 1 cut(s) 16
PciI ACATGT 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 84
PkrI GCNGC 1 cut(s) 248
PscI ACATGT 1 cut(s) 92
PsiI TTATAA 1 cut(s) 198
PspPI GGNCC 1 cut(s) 253
SatI GCNGC 1 cut(s) 247
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 253
SetI ASST 1 cut(s) 87
SfuI TTCGAA 1 cut(s) 88
SinI GGWCC 1 cut(s) 253
Sse9I AATT 2 cut(s) 104, 274
SseBI AGGCCT 1 cut(s) 16
SspI AATATT 1 cut(s) 122
SspMI CTAG 1 cut(s) 9
StuI AGGCCT 1 cut(s) 16
TaqI TCGA 3 cut(s) 27, 88, 110
TasI AATT 2 cut(s) 104, 274
TseI GCWGC 1 cut(s) 246
TspDTI ATGAA 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 1 cut(s) 104
XceI RCATGY 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 84
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.