Rw2G051440

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000388
Physical Location & Seq
Reverse (-)
79151802 .. 79152662
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G051440.1

Sequence Viewer

Length: 861 bp
ATGTTATCATTGCAACAGCAGTCCTGTATGGATATCGACAATCTGGTTGGGAAGATGAAAAGACATGAAACAAAGTTATTAATTCAGAAGAAGAAGAATTCGGATTCTGACAACAAATTAAATGATGTTAAAATTCACATGGCCTACTTGGAGTGGTACAAGAAGGATTCCAAAGATAAAGGTTATGGATACTATGACATGTACAGAAATAAGGAGAAGCCAGCTGACGTTAAGGTTAACGAGTATAAGAAGAAACTCATGAATTACTGGGAGGACTCTGTCACAGAAATAGAGAACAAGCCTCAGTTAGACAGAGCTTACTTACGGCTTCGTTGGCTTTATGCAGGCACAACCTACTGGAGGATGGTTGAACCACTTCACATTGCAGACTGCTATAAGGATGGTGGGGAAAATTACCATACCGAGGATGGGAAAAGGCCCAAACATTTTACTCTGTTGGCGAAATTGCATCAGGAGAAGCAAGAGCAAGAAAAGAAGAAGAGGCAGGAAACACAGAAACAAGAAGAAACACCAGAATCTGGCCCAAGCAAATCCAAAAGAAAGAACGTGGGTTCTATTTTGAATGATGATTCTTGCTTTTGGGCATGTGTTGAGGAAGCTCTCATCTTGTTGAAGAATGGAGGACTAACTACTGATGACAAAGGGAAGTTGAAAGAGTTTGAGGACTATGTGTGGACTGCTCTAAAGAATTATGCAGTGTCACCTGAGATTTTCTTGAAGAAGAGCAGTTTTATGAAATGGTGGAATGAGTATAAAGGAATTGTTGAAAGCTCCTCTTCGCTCTCGCACTTCATGAAAAATGGTGGTCCCAAAGAGTACGAGGAAGGGAAGTTTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

286

Amino Acids

33.78

Weight (kDa)

8.79

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDS1_EP PF18117 49 - 267 3.3e-57 Enhanced disease susceptibility 1 protein EP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 539
AcsI RAATTY 2 cut(s) 97, 132
AfaI GTAC 3 cut(s) 158, 203, 839
AfiI CCNNNNNNNGG 4 cut(s) 360, 424, 429, 539
AflIII ACRYGT 1 cut(s) 198
AgsI TTSAA 6 cut(s) 371, 583, 634, 673, 739, 788
AluBI AGCT 4 cut(s) 224, 317, 620, 792
AluI AGCT 4 cut(s) 224, 317, 620, 792
AlwNI CAGNNNCTG 1 cut(s) 539
AoxI GGCC 3 cut(s) 141, 437, 541
ApoI RAATTY 2 cut(s) 97, 132
AseI ATTAAT 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 375
AspS9I GGNCC 3 cut(s) 438, 542, 827
AsuHPI GGTGA 1 cut(s) 714
AvaII GGWCC 1 cut(s) 827
BccI CCATC 3 cut(s) 358, 395, 422
BceAI ACGGC 1 cut(s) 341
BciVI GTATCC 1 cut(s) 182
BfaI CTAG 1 cut(s) 859
BfuI GTATCC 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 827
BmgT120I GGNCC 3 cut(s) 438, 542, 827
BmiI GGNNCC 1 cut(s) 829
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 478
BmuI ACTGGG 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 379
BsaJI CCNNGG 1 cut(s) 423
Bsc4I CCNNNNNNNGG 4 cut(s) 360, 424, 429, 539
Bse1I ACTGG 2 cut(s) 272, 362
Bse3DI GCAATG 2 cut(s) 8, 381
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 3 cut(s) 369, 406, 433
BseLI CCNNNNNNNGG 4 cut(s) 360, 424, 429, 539
BseMI GCAATG 2 cut(s) 8, 381
BseMII CTCAG 2 cut(s) 317, 717
BseNI ACTGG 2 cut(s) 272, 362
BseRI GAGGAG 1 cut(s) 784
BshFI GGCC 3 cut(s) 143, 439, 543
BslFI GGGAC 1 cut(s) 813
BslI CCNNNNNNNGG 4 cut(s) 360, 424, 429, 539
BsmFI GGGAC 1 cut(s) 813
BsnI GGCC 3 cut(s) 143, 439, 543
Bsp1407I TGTACA 1 cut(s) 201
BspANI GGCC 3 cut(s) 143, 439, 543
BspCNI CTCAG 2 cut(s) 316, 718
BspHI TCATGA 2 cut(s) 258, 813
BspLI GGNNCC 1 cut(s) 829
BspQI GCTCTTC 1 cut(s) 737
BsrDI GCAATG 2 cut(s) 8, 381
BsrGI TGTACA 1 cut(s) 201
BsrI ACTGG 2 cut(s) 272, 362
BssECI CCNNGG 1 cut(s) 423
Bst6I CTCTTC 3 cut(s) 494, 737, 802
BstAUI TGTACA 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 222, 346
BstDEI CTNAG 2 cut(s) 303, 726
BstENI CCTNNNNNAGG 1 cut(s) 358
BstF5I GGATG 3 cut(s) 369, 406, 433
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNSI RCATGY 2 cut(s) 202, 609
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 3 cut(s) 143, 439, 543
BtsCI GGATG 3 cut(s) 369, 406, 433
BtsI GCAGTG 1 cut(s) 723
BtsIMutI CAGTG 1 cut(s) 723
Cac8I GCNNGC 2 cut(s) 222, 346
CaiI CAGNNNCTG 1 cut(s) 539
CciI TCATGA 2 cut(s) 258, 813
Cfr13I GGNCC 3 cut(s) 438, 542, 827
Csp6I GTAC 3 cut(s) 157, 202, 838
CviAII CATG 6 cut(s) 65, 139, 199, 259, 606, 814
CviQI GTAC 3 cut(s) 157, 202, 838
DdeI CTNAG 2 cut(s) 303, 726
Eam1104I CTCTTC 3 cut(s) 494, 737, 802
EarI CTCTTC 3 cut(s) 494, 737, 802
Eco32I GATATC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 827
EcoNI CCTNNNNNAGG 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 97
EcoRV GATATC 1 cut(s) 34
FaeI CATG 6 cut(s) 68, 142, 202, 262, 609, 817
FalI AAGNNNNNCTT 2 cut(s) 781, 813
FaqI GGGAC 1 cut(s) 813
FatI CATG 6 cut(s) 64, 138, 198, 258, 605, 813
FokI GGATG 3 cut(s) 376, 413, 440
FspBI CTAG 1 cut(s) 859
GsuI CTGGAG 1 cut(s) 379
HaeIII GGCC 3 cut(s) 143, 439, 543
Hin1II CATG 6 cut(s) 68, 142, 202, 262, 609, 817
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 5 cut(s) 104, 167, 275, 536, 590
HpaI GTTAAC 1 cut(s) 238
HphI GGTGA 1 cut(s) 714
Hpy166II GTNNAC 3 cut(s) 238, 696, 855
Hpy188I TCNGA 3 cut(s) 87, 103, 109
Hpy188III TCNNGA 4 cut(s) 259, 473, 736, 814
Hpy8I GTNNAC 3 cut(s) 238, 696, 855
HpyAV CCTTC 2 cut(s) 157, 839
HpyCH4IV ACGT 2 cut(s) 228, 567
HpyCH4V TGCA 5 cut(s) 13, 344, 386, 469, 716
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 2 cut(s) 303, 726
HpySE526I ACGT 2 cut(s) 228, 567
Hsp92II CATG 6 cut(s) 68, 142, 202, 262, 609, 817
KspAI GTTAAC 1 cut(s) 238
LguI GCTCTTC 1 cut(s) 737
LmnI GCTCC 1 cut(s) 797
LweI GCATC 1 cut(s) 478
MaeI CTAG 1 cut(s) 859
MaeII ACGT 2 cut(s) 228, 567
MaeIII GTNAC 2 cut(s) 280, 720
MluCI AATT 9 cut(s) 81, 97, 116, 132, 262, 412, 464, 709, 780
MlyI GAGTC 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 375
MseI TTAA 5 cut(s) 80, 119, 129, 231, 237
MspA1I CMGCKG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 334
NlaIII CATG 6 cut(s) 68, 142, 202, 262, 609, 817
NlaIV GGNNCC 1 cut(s) 829
NmuCI GTSAC 2 cut(s) 280, 720
NspI RCATGY 2 cut(s) 202, 609
PagI TCATGA 2 cut(s) 258, 813
PciI ACATGT 1 cut(s) 198
PciSI GCTCTTC 1 cut(s) 737
PdmI GAANNNNTTC 1 cut(s) 375
PfeI GAWTC 4 cut(s) 104, 167, 536, 590
PflFI GACNNNGTC 1 cut(s) 278
PflMI CCANNNNNTGG 1 cut(s) 539
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PscI ACATGT 1 cut(s) 198
PshBI ATTAAT 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 829
PspPI GGNCC 3 cut(s) 438, 542, 827
PstNI CAGNNNCTG 1 cut(s) 539
PsyI GACNNNGTC 1 cut(s) 278
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 3 cut(s) 158, 203, 839
RsaNI GTAC 3 cut(s) 157, 202, 838
SapI GCTCTTC 1 cut(s) 737
SaqAI TTAA 5 cut(s) 80, 119, 129, 231, 237
Sau96I GGNCC 3 cut(s) 438, 542, 827
SchI GAGTC 1 cut(s) 269
SfaNI GCATC 1 cut(s) 478
SinI GGWCC 1 cut(s) 827
Sse9I AATT 9 cut(s) 81, 97, 116, 132, 262, 412, 464, 709, 780
SspMI CTAG 1 cut(s) 859
TaiI ACGT 2 cut(s) 231, 570
TaqI TCGA 1 cut(s) 36
TasI AATT 9 cut(s) 81, 97, 116, 132, 262, 412, 464, 709, 780
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 4 cut(s) 104, 167, 536, 590
Tru1I TTAA 5 cut(s) 80, 119, 129, 231, 237
Tru9I TTAA 5 cut(s) 80, 119, 129, 231, 237
TscAI CASTG 1 cut(s) 723
TseFI GTSAC 2 cut(s) 280, 720
Tsp45I GTSAC 2 cut(s) 280, 720
TspDTI ATGAA 6 cut(s) 71, 81, 275, 770, 802, 830
TspRI CASTG 1 cut(s) 723
Tth111I GACNNNGTC 1 cut(s) 278
Van91I CCANNNNNTGG 1 cut(s) 539
VpaK11BI GGWCC 1 cut(s) 827
VspI ATTAAT 1 cut(s) 80
XagI CCTNNNNNAGG 1 cut(s) 358
XapI RAATTY 2 cut(s) 97, 132
XceI RCATGY 2 cut(s) 202, 609
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.