Rh6DG267100

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000388
Physical Location & Seq
Reverse (-)
45961110 .. 45961889
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG267100.1

Sequence Viewer

Length: 780 bp
ATGAAGAATCAGATTCGAAGGATGAAAAAACATGAAACAGAGTTATTAATTCAGAAGAAGAAGAATTCTGGTTCAGACAAGAAACTGAATAAAATGAAAACGTGTTTGGCCTTATTCGAGTGGTACAAGAAGGAGTCAAACTTTTTGAACACCGGATACTATGACATGTACAAAAAGCAGTGCAATCCGAGTGATATTAATGTTAGTGAGTACAAGAAAAGGCTTTGGAATTTCTGGGAGGACACAGTTACAGAAGTAGAGAATAAGCCTCAGATGGAAGGATCTCCCCTTGGAGTACGTTGGCTTTGGGCGGGTACAAACTACCGAAGGATGATTGAACCACTTCACATTGCGGAGTTCTACAAGAAAAGTGGCGCGAGAAATTACAAAAATGGTGGGAAAAGGCCTAAACATTTCATTCTATTGGAACAATGGCTGGAGAAGGAAATAAAAGGGAAAGCCAAAAGACAGATGTCTGCTACTTCAAATGAAGATTCTTGTTTCTGGGCACACGTTGAGGACGCCATTATCTTGTGCAACCTTTTGAACAATGGAGAATCGGTCACTGATGTAGAGAAAGTAACATACAAGGAGGAGTTGAAAAAGTTCGAGGATTACGTGTGGGATGTTATCGACAACTATGCAGTGTGTCCTGATATTTTCTTGGAGAAGGGCAGTTTTATGAGATGGTGGAAGCAGTACAAGGGAATTGTTGGAAGTTCTTACTCCTCACAGCTCGCTGACTATATGAATAGTCGCTCTTACCTCAAGTATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

259

Amino Acids

30.86

Weight (kDa)

9.21

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDS1_EP PF18117 39 - 247 1.1e-63 Enhanced disease susceptibility 1 protein EP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 773
AccII CGCG 1 cut(s) 377
AciI CCGC 2 cut(s) 311, 353
AclWI GGATC 1 cut(s) 289
AcsI RAATTY 2 cut(s) 64, 229
AcyI GRCGYC 1 cut(s) 522
AfaI GTAC 6 cut(s) 125, 170, 212, 297, 316, 701
AflIII ACRYGT 4 cut(s) 101, 165, 511, 618
AgsI TTSAA 5 cut(s) 148, 338, 486, 547, 601
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 1 cut(s) 736
AluI AGCT 1 cut(s) 736
AlwI GGATC 1 cut(s) 289
AoxI GGCC 2 cut(s) 108, 404
ApoI RAATTY 2 cut(s) 64, 229
AseI ATTAAT 2 cut(s) 47, 198
Asp700I GAANNNNTTC 2 cut(s) 342, 605
AspLEI GCGC 1 cut(s) 377
AsuII TTCGAA 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 511
BccI CCATC 2 cut(s) 268, 681
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciVI GTATCC 1 cut(s) 149
BfuI GTATCC 1 cut(s) 149
BoxI GACNNNNGTC 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 458
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 752
BsaAI YACGTR 1 cut(s) 619
BsaHI GRCGYC 1 cut(s) 522
BsaJI CCNNGG 1 cut(s) 289
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bse3DI GCAATG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 3 cut(s) 27, 336, 631
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 1 cut(s) 284
BseRI GAGGAG 2 cut(s) 608, 718
BseSI GKGCMC 1 cut(s) 511
Bsh1236I CGCG 1 cut(s) 377
BshFI GGCC 2 cut(s) 110, 406
BsiSI CCGG 1 cut(s) 153
BsnI GGCC 2 cut(s) 110, 406
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 511
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 1 cut(s) 281
BspACI CCGC 2 cut(s) 311, 353
BspANI GGCC 2 cut(s) 110, 406
BspCNI CTCAG 1 cut(s) 283
BspFNI CGCG 1 cut(s) 377
BspPI GGATC 1 cut(s) 289
BspT104I TTCGAA 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 348
BsrGI TGTACA 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 1 cut(s) 281
BssNAI GTATAC 1 cut(s) 774
BssNI GRCGYC 1 cut(s) 522
BssT1I CCWWGG 1 cut(s) 289
Bst1107I GTATAC 1 cut(s) 774
Bst4CI ACNGT 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 522
BstAUI TGTACA 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 619
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 738
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 3 cut(s) 27, 336, 631
BstFNI CGCG 1 cut(s) 377
BstHHI GCGC 1 cut(s) 377
BstKTI GATC 1 cut(s) 284
BstMBI GATC 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 169
BstPAI GACNNNNGTC 1 cut(s) 472
BstSLI GKGCMC 1 cut(s) 511
BstUI CGCG 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BstZ17I GTATAC 1 cut(s) 774
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 2 cut(s) 110, 406
BtsCI GGATG 3 cut(s) 27, 336, 631
BtsI GCAGTG 2 cut(s) 185, 651
BtsIMutI CAGTG 3 cut(s) 185, 564, 651
Cac8I GCNNGC 1 cut(s) 738
CfoI GCGC 1 cut(s) 377
CseI GACGC 1 cut(s) 530
Csp6I GTAC 6 cut(s) 124, 169, 211, 296, 315, 700
CspCI CAANNNNNGTGG 4 cut(s) 352, 376, 387, 411
CviAII CATG 3 cut(s) 32, 166, 777
CviJI RGCY 8 cut(s) 110, 223, 268, 304, 406, 436, 461, 736
CviKI_1 RGCY 8 cut(s) 110, 223, 268, 304, 406, 436, 461, 736
CviQI GTAC 6 cut(s) 124, 169, 211, 296, 315, 700
DdeI CTNAG 1 cut(s) 270
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 289
Eco147I AGGCCT 1 cut(s) 406
EcoRI GAATTC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 3 cut(s) 35, 169, 780
FatI CATG 3 cut(s) 31, 165, 776
FauI CCCGC 1 cut(s) 304
FblI GTMKAC 1 cut(s) 773
FokI GGATG 3 cut(s) 34, 343, 638
GlaI GCGC 1 cut(s) 376
GsuI CTGGAG 1 cut(s) 458
HaeIII GGCC 2 cut(s) 110, 406
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 530
HhaI GCGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 522
Hin1II CATG 3 cut(s) 35, 169, 780
Hin6I GCGC 1 cut(s) 375
HinP1I GCGC 1 cut(s) 375
HinfI GANTC 5 cut(s) 7, 13, 134, 494, 557
HpaII CCGG 1 cut(s) 153
Hpy166II GTNNAC 1 cut(s) 774
Hpy188I TCNGA 5 cut(s) 12, 54, 76, 189, 273
Hpy188III TCNNGA 1 cut(s) 653
Hpy8I GTNNAC 1 cut(s) 774
HpyAV CCTTC 6 cut(s) 12, 124, 272, 321, 436, 664
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 4 cut(s) 101, 298, 513, 618
HpyCH4V TGCA 3 cut(s) 183, 537, 644
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 4 cut(s) 101, 298, 513, 618
Hsp92I GRCGYC 1 cut(s) 522
Hsp92II CATG 3 cut(s) 35, 169, 780
HspAI GCGC 1 cut(s) 375
Kzo9I GATC 1 cut(s) 281
LpnPI CCDG 6 cut(s) 54, 166, 220, 422, 490, 666
MaeII ACGT 4 cut(s) 101, 298, 513, 618
MaeIII GTNAC 3 cut(s) 247, 562, 580
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MboII GAAGA 5 cut(s) 16, 67, 70, 73, 503
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 5 cut(s) 48, 64, 229, 382, 708
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 694
MnlI CCTC 7 cut(s) 232, 279, 511, 586, 604, 739, 776
MroXI GAANNNNTTC 2 cut(s) 342, 605
MseI TTAA 2 cut(s) 47, 198
MspI CCGG 1 cut(s) 153
MvnI CGCG 1 cut(s) 377
NdeII GATC 1 cut(s) 281
NlaIII CATG 3 cut(s) 35, 169, 780
NmuCI GTSAC 1 cut(s) 562
NspI RCATGY 1 cut(s) 169
NspV TTCGAA 1 cut(s) 16
PceI AGGCCT 1 cut(s) 406
PciI ACATGT 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PdmI GAANNNNTTC 2 cut(s) 342, 605
PfeI GAWTC 4 cut(s) 7, 13, 494, 557
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Ppu21I YACGTR 1 cut(s) 619
PscI ACATGT 1 cut(s) 165
PshAI GACNNNNGTC 1 cut(s) 472
PshBI ATTAAT 2 cut(s) 47, 198
PsrI GAACNNNNNNTAC 2 cut(s) 140, 172
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 6 cut(s) 125, 170, 212, 297, 316, 701
RsaNI GTAC 6 cut(s) 124, 169, 211, 296, 315, 700
SaqAI TTAA 2 cut(s) 47, 198
Sau3AI GATC 1 cut(s) 281
SchI GAGTC 1 cut(s) 143
SduI GDGCHC 1 cut(s) 511
SetI ASST 7 cut(s) 104, 301, 516, 543, 621, 738, 768
SfuI TTCGAA 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 767
SmoI CTYRAG 1 cut(s) 767
Sse9I AATT 5 cut(s) 48, 64, 229, 382, 708
SseBI AGGCCT 1 cut(s) 406
SsiI CCGC 2 cut(s) 311, 353
StuI AGGCCT 1 cut(s) 406
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 4 cut(s) 104, 301, 516, 621
TaqI TCGA 4 cut(s) 16, 117, 609, 633
TaqII GACCGA 1 cut(s) 550
TasI AATT 5 cut(s) 48, 64, 229, 382, 708
TatI WGTACW 3 cut(s) 168, 210, 699
TfiI GAWTC 4 cut(s) 7, 13, 494, 557
Tru1I TTAA 2 cut(s) 47, 198
Tru9I TTAA 2 cut(s) 47, 198
TscAI CASTG 3 cut(s) 185, 571, 651
TseFI GTSAC 1 cut(s) 562
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 7 cut(s) 17, 38, 48, 110, 406, 504, 764
TspRI CASTG 3 cut(s) 185, 571, 651
VspI ATTAAT 2 cut(s) 47, 198
XapI RAATTY 2 cut(s) 64, 229
XceI RCATGY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 773
XmnI GAANNNNTTC 2 cut(s) 342, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.