Rmu_sc0009395.1_g000016

Senescence-associated carboxylesterase 101-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009395.1
OG0000388
Physical Location & Seq
Forward (+)
72158 .. 72991
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009395.1_g000016.1.cds

Sequence Viewer

Length: 834 bp
atggatatcgacaatctggttgggaagatgaaaagacatgaaacaaagttattaattcagaagaagaagaattcggattctgacaacaaattaaatgatgttaaaattcacatggcctacttggagtggtacaagaaggattccaaagataaaggttatggatactatgacatgtacagaaataaggagaagccagctgacgttaaggttaacgagtataagaagaaactcatgaattactgggaggactctgtcacagaaatagagaacaagcctcagttagacagagcttacttacggcttcgttggctttatgcaggcacaacctactggaggatggttgaaccacttcacattgcagactgctataaggatggtggggaaaattaccataccgaggatgggaaaaggcccaaacattttactctgttggcgaaattgcatcaggagaagcaagagcaagaaaagaagaagaggcaggaaacacagaaacaagaagaaacaccagaatctggcccaagcaaatccaaaagaaagaacgtgggttctattttgaatgatgattcttgcttttgggcatgtgttgaggaagctctcatcttgttgaagaatggaggactaactactgatgacaaagggaagttgaaagagtttgaggactatgtgtggactgctctaaagaattatgcagtgtcacctgagattttcttgaagaagagcagttttatgaaatggtggaatgagtataaaggaattgttgaaagctcctcatcgctctcgcacttcatgaaaaatggtggtcccaaagagtacgaggaagggaagtttacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

277

Amino Acids

32.76

Weight (kDa)

8.83

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000388)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14930 AT5G14930 AT5G14930
fragaria_vesca FvH4_2g18461 FvH4_6g50160 FvH4_6g50160 FvH4_6g50160 FvH4_6g50162
malus_domestica MD01G1017800.v1.1 MD09G1038500.v1.1 MD09G1038700.v1.1 MD09G1039000.v1.1 MD09G1039700.v1.1 MD09G1039800.v1.1 MD17G1039600.v1.1 MD17G1039700.v1.1 MD17G1039800.v1.1 MD17G1039900.v1.1 MD17G1040000.v1.1
prunus_persica Prupe.2G019500_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279000_v2.0.a1 Prupe.3G279300_v2.0.a1
pyrus_communis pycom111g03070 pycom17g03570 pycom17g03580
rosa_chinensis RchiOBHm_Chr2g0170411 RchiOBHm_Chr2g0170431 RchiOBHm_Chr2g0170561 RchiOBHm_Chr6g0283951 RchiOBHm_Chr6g0283961 RchiOBHm_Chr6g0283981 RchiOBHm_Chr7g0219521 RchiOBHm_Chr7g0219541
rosa_laevigata RLG00000002285 RLG00000012782 RLG00000012784 RLG00000021954 RLG00000021955 RLG00000021956
rosa_multiflora Rmu_co8245087.1_g000001 Rmu_co8259259.1_g000001 Rmu_sc0003047.1_g000001 Rmu_sc0008697.1_g000004 Rmu_sc0009395.1_g000014 Rmu_sc0009395.1_g000016 Rmu_sc0009395.1_g000019 Rmu_sc0009395.1_g000026 Rmu_sc0009395.1_g000028 Rmu_sc0009395.1_g000040 Rmu_sc0021809.1_g000001 Rmu_ssc0000442.1_g000026 Rmu_ssc0000442.1_g000030
rosa_roxburghii Rroxscaffold_2G00081280 Rroxscaffold_2G00081290 Rroxscaffold_2G00081330 Rroxscaffold_3G00239990 Rroxscaffold_4G00294050 Rroxscaffold_4G00294070 Rroxscaffold_7G00185030
rosa_rugosa Rorug02G0548700 Rorug02G0548900 Rorug06G0158800 Rorug06G0158900 Rorug07G0186000
rosa_samantha Rh2AG620300 Rh2AG620500 Rh2AG620600 Rh2AG620700 Rh2BG631200 Rh2BG631400 Rh2BG631600 Rh2BG631700 Rh2CG601100 Rh2CG601200 Rh2CG601300 Rh2DG643900 Rh2DG644200 Rh2DG644400 Rh6AG272000 Rh6AG272300 Rh6BG272900 Rh6BG273000 Rh6CG274100 Rh6CG274200 Rh6DG267100 Rh6DG267200 Rh6DG267300 Rh7AG329500 Rh7AG329900 Rh7BG319400 Rh7BG319600 Rh7CG346800 Rh7CG347200 Rh7DG325400
rosa_wichuraiana Rw2G051410 Rw2G051430 Rw2G051440 Rw2G051450 Rw6G023440 Rw7G027780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 512
AcsI RAATTY 2 cut(s) 70, 105
AfaI GTAC 3 cut(s) 131, 176, 812
AfiI CCNNNNNNNGG 4 cut(s) 333, 397, 402, 512
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 6 cut(s) 344, 556, 607, 646, 712, 761
AluBI AGCT 4 cut(s) 197, 290, 593, 765
AluI AGCT 4 cut(s) 197, 290, 593, 765
AlwNI CAGNNNCTG 1 cut(s) 512
AoxI GGCC 3 cut(s) 114, 410, 514
ApoI RAATTY 2 cut(s) 70, 105
AseI ATTAAT 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 348
AspS9I GGNCC 3 cut(s) 411, 515, 800
AsuHPI GGTGA 1 cut(s) 687
AvaII GGWCC 1 cut(s) 800
BccI CCATC 3 cut(s) 331, 368, 395
BceAI ACGGC 1 cut(s) 314
BciVI GTATCC 1 cut(s) 155
BfaI CTAG 1 cut(s) 832
BfuI GTATCC 1 cut(s) 155
Bme18I GGWCC 1 cut(s) 800
BmgT120I GGNCC 3 cut(s) 411, 515, 800
BmiI GGNNCC 1 cut(s) 802
BmrI ACTGGG 1 cut(s) 250
BmsI GCATC 1 cut(s) 451
BmuI ACTGGG 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 352
BsaJI CCNNGG 1 cut(s) 396
Bsc4I CCNNNNNNNGG 4 cut(s) 333, 397, 402, 512
Bse1I ACTGG 2 cut(s) 245, 335
Bse3DI GCAATG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 3 cut(s) 342, 379, 406
BseLI CCNNNNNNNGG 4 cut(s) 333, 397, 402, 512
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 2 cut(s) 290, 690
BseNI ACTGG 2 cut(s) 245, 335
BseRI GAGGAG 1 cut(s) 757
BshFI GGCC 3 cut(s) 116, 412, 516
BslFI GGGAC 1 cut(s) 786
BslI CCNNNNNNNGG 4 cut(s) 333, 397, 402, 512
BsmFI GGGAC 1 cut(s) 786
BsnI GGCC 3 cut(s) 116, 412, 516
Bsp1407I TGTACA 1 cut(s) 174
BspANI GGCC 3 cut(s) 116, 412, 516
BspCNI CTCAG 2 cut(s) 289, 691
BspHI TCATGA 2 cut(s) 231, 786
BspLI GGNNCC 1 cut(s) 802
BspQI GCTCTTC 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 354
BsrGI TGTACA 1 cut(s) 174
BsrI ACTGG 2 cut(s) 245, 335
BssECI CCNNGG 1 cut(s) 396
Bst6I CTCTTC 2 cut(s) 467, 710
BstAUI TGTACA 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 195, 319
BstDEI CTNAG 2 cut(s) 276, 699
BstENI CCTNNNNNAGG 1 cut(s) 331
BstF5I GGATG 3 cut(s) 342, 379, 406
BstMWI GCNNNNNNNGC 1 cut(s) 307
BstNSI RCATGY 2 cut(s) 175, 582
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 3 cut(s) 116, 412, 516
BtgZI GCGATG 1 cut(s) 756
BtsCI GGATG 3 cut(s) 342, 379, 406
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 1 cut(s) 696
Cac8I GCNNGC 2 cut(s) 195, 319
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 2 cut(s) 231, 786
Cfr13I GGNCC 3 cut(s) 411, 515, 800
Csp6I GTAC 3 cut(s) 130, 175, 811
CviAII CATG 6 cut(s) 38, 112, 172, 232, 579, 787
CviQI GTAC 3 cut(s) 130, 175, 811
DdeI CTNAG 2 cut(s) 276, 699
Eam1104I CTCTTC 2 cut(s) 467, 710
EarI CTCTTC 2 cut(s) 467, 710
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 800
EcoNI CCTNNNNNAGG 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 70
EcoRV GATATC 1 cut(s) 7
FaeI CATG 6 cut(s) 41, 115, 175, 235, 582, 790
FaqI GGGAC 1 cut(s) 786
FatI CATG 6 cut(s) 37, 111, 171, 231, 578, 786
FokI GGATG 3 cut(s) 349, 386, 413
FspBI CTAG 1 cut(s) 832
GsuI CTGGAG 1 cut(s) 352
HaeIII GGCC 3 cut(s) 116, 412, 516
Hin1II CATG 6 cut(s) 41, 115, 175, 235, 582, 790
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 5 cut(s) 77, 140, 248, 509, 563
HpaI GTTAAC 1 cut(s) 211
HphI GGTGA 1 cut(s) 687
Hpy166II GTNNAC 3 cut(s) 211, 669, 828
Hpy188I TCNGA 3 cut(s) 60, 76, 82
Hpy188III TCNNGA 4 cut(s) 232, 446, 709, 787
Hpy8I GTNNAC 3 cut(s) 211, 669, 828
HpyAV CCTTC 2 cut(s) 130, 812
HpyCH4IV ACGT 2 cut(s) 201, 540
HpyCH4V TGCA 4 cut(s) 317, 359, 442, 689
HpyF10VI GCNNNNNNNGC 1 cut(s) 307
HpyF3I CTNAG 2 cut(s) 276, 699
HpySE526I ACGT 2 cut(s) 201, 540
Hsp92II CATG 6 cut(s) 41, 115, 175, 235, 582, 790
KspAI GTTAAC 1 cut(s) 211
LguI GCTCTTC 1 cut(s) 710
LmnI GCTCC 1 cut(s) 770
LweI GCATC 1 cut(s) 451
MaeI CTAG 1 cut(s) 832
MaeII ACGT 2 cut(s) 201, 540
MaeIII GTNAC 2 cut(s) 253, 693
MluCI AATT 9 cut(s) 54, 70, 89, 105, 235, 385, 437, 682, 753
MlyI GAGTC 1 cut(s) 242
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 5 cut(s) 53, 92, 102, 204, 210
MspA1I CMGCKG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 307
NlaIII CATG 6 cut(s) 41, 115, 175, 235, 582, 790
NlaIV GGNNCC 1 cut(s) 802
NmuCI GTSAC 2 cut(s) 253, 693
NspI RCATGY 2 cut(s) 175, 582
PagI TCATGA 2 cut(s) 231, 786
PciI ACATGT 1 cut(s) 171
PciSI GCTCTTC 1 cut(s) 710
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 4 cut(s) 77, 140, 509, 563
PflFI GACNNNGTC 1 cut(s) 251
PflMI CCANNNNNTGG 1 cut(s) 512
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PscI ACATGT 1 cut(s) 171
PshBI ATTAAT 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 802
PspPI GGNCC 3 cut(s) 411, 515, 800
PstNI CAGNNNCTG 1 cut(s) 512
PsyI GACNNNGTC 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 3 cut(s) 131, 176, 812
RsaNI GTAC 3 cut(s) 130, 175, 811
SapI GCTCTTC 1 cut(s) 710
SaqAI TTAA 5 cut(s) 53, 92, 102, 204, 210
Sau96I GGNCC 3 cut(s) 411, 515, 800
SchI GAGTC 1 cut(s) 242
SfaNI GCATC 1 cut(s) 451
SinI GGWCC 1 cut(s) 800
Sse9I AATT 9 cut(s) 54, 70, 89, 105, 235, 385, 437, 682, 753
SspMI CTAG 1 cut(s) 832
TaiI ACGT 2 cut(s) 204, 543
TaqI TCGA 1 cut(s) 9
TasI AATT 9 cut(s) 54, 70, 89, 105, 235, 385, 437, 682, 753
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 4 cut(s) 77, 140, 509, 563
Tru1I TTAA 5 cut(s) 53, 92, 102, 204, 210
Tru9I TTAA 5 cut(s) 53, 92, 102, 204, 210
TscAI CASTG 1 cut(s) 696
TseFI GTSAC 2 cut(s) 253, 693
Tsp45I GTSAC 2 cut(s) 253, 693
TspDTI ATGAA 6 cut(s) 44, 54, 248, 743, 775, 803
TspRI CASTG 1 cut(s) 696
Tth111I GACNNNGTC 1 cut(s) 251
Van91I CCANNNNNTGG 1 cut(s) 512
VpaK11BI GGWCC 1 cut(s) 800
VspI ATTAAT 1 cut(s) 53
XagI CCTNNNNNAGG 1 cut(s) 331
XapI RAATTY 2 cut(s) 70, 105
XceI RCATGY 2 cut(s) 175, 582
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.